HEADER OXIDOREDUCTASE 11-MAY-06 2DPH TITLE CRYSTAL STRUCTURE OF FORMALDEHYDE DISMUTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMALDEHYDE DISMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.2.99.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 STRAIN: F61 KEYWDS DISMUTATION OF ALDEHYDES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.HASEGAWA,A.YAMANO,H.YANASE REVDAT 4 13-MAR-24 2DPH 1 REMARK LINK REVDAT 3 13-JUL-11 2DPH 1 VERSN REVDAT 2 24-FEB-09 2DPH 1 VERSN REVDAT 1 29-MAY-07 2DPH 0 JRNL AUTH T.HASEGAWA,A.YAMANO,K.MIURA,Y.KATSUBE,H.YANASE,N.KATO JRNL TITL THE X-RAY CRYSTAL STRUCTURE OF FORMALDEHYDE DISMUTASE AT 2.3 JRNL TITL 2 A RESOLUTION JRNL REF ACTA CRYSTALLOGR.,SECT.A V. 58 C102 2002 JRNL REFN ISSN 0108-7673 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2085 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2882 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6016 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.82000 REMARK 3 B22 (A**2) : 0.82000 REMARK 3 B33 (A**2) : -1.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.324 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.232 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.568 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6246 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8472 ; 1.273 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 794 ; 6.177 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 266 ;34.862 ;24.586 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1018 ;14.896 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;14.641 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 936 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4728 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2948 ; 0.185 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4150 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 341 ; 0.123 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.065 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.203 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.140 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4042 ; 0.458 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6300 ; 0.794 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2475 ; 1.241 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2172 ; 1.895 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DPH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2736, 1.2832, 1.2827 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41519 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 41.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.770 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.33 REMARK 200 R MERGE FOR SHELL (I) : 0.20100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.11450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 45.11450 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.34450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.11450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.67225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.11450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 170.01675 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.11450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.11450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 113.34450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 45.11450 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 170.01675 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 45.11450 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 56.67225 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 19600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -231.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 90.22900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 28 -1.10 65.27 REMARK 500 HIS A 66 20.34 -143.29 REMARK 500 GLU A 67 73.14 -118.14 REMARK 500 ASP A 78 55.29 -105.73 REMARK 500 ASP A 118 -100.22 -103.90 REMARK 500 LEU A 121 144.20 -174.40 REMARK 500 ASP A 169 -76.41 -154.92 REMARK 500 LYS A 396 36.22 39.77 REMARK 500 ASN A 397 -73.33 -89.71 REMARK 500 GLU B 67 68.87 -119.90 REMARK 500 ASP B 78 53.59 -108.61 REMARK 500 LEU B 121 145.53 -172.32 REMARK 500 ASP B 169 -70.01 -156.80 REMARK 500 ALA B 261 41.74 -104.85 REMARK 500 GLU B 265 35.22 -93.65 REMARK 500 LEU B 395 36.01 -99.56 REMARK 500 LYS B 396 -121.65 56.05 REMARK 500 ASN B 397 92.65 -160.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 45 SG REMARK 620 2 HIS A 66 NE2 117.7 REMARK 620 3 ASP A 169 OD2 123.4 96.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 96 SG REMARK 620 2 CYS A 99 SG 109.7 REMARK 620 3 CYS A 102 SG 118.3 104.1 REMARK 620 4 CYS A 110 SG 104.9 111.5 108.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 45 SG REMARK 620 2 HIS B 66 NE2 117.5 REMARK 620 3 ASP B 169 OD2 128.1 90.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 96 SG REMARK 620 2 CYS B 99 SG 105.6 REMARK 620 3 CYS B 102 SG 114.2 103.2 REMARK 620 4 CYS B 110 SG 106.0 113.8 113.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 2403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1004 DBREF 2DPH A 1 398 UNP Q52078 Q52078_PSEPU 2 399 DBREF 2DPH B 1 398 UNP Q52078 Q52078_PSEPU 2 399 SEQRES 1 A 398 ALA GLY ASN LYS SER VAL VAL TYR HIS GLY THR ARG ASP SEQRES 2 A 398 LEU ARG VAL GLU THR VAL PRO TYR PRO LYS LEU GLU HIS SEQRES 3 A 398 ASN ASN ARG LYS LEU GLU HIS ALA VAL ILE LEU LYS VAL SEQRES 4 A 398 VAL SER THR ASN ILE CYS GLY SER ASP GLN HIS ILE TYR SEQRES 5 A 398 ARG GLY ARG PHE ILE VAL PRO LYS GLY HIS VAL LEU GLY SEQRES 6 A 398 HIS GLU ILE THR GLY GLU VAL VAL GLU LYS GLY SER ASP SEQRES 7 A 398 VAL GLU LEU MET ASP ILE GLY ASP LEU VAL SER VAL PRO SEQRES 8 A 398 PHE ASN VAL ALA CYS GLY ARG CYS ARG ASN CYS LYS GLU SEQRES 9 A 398 ALA ARG SER ASP VAL CYS GLU ASN ASN LEU VAL ASN PRO SEQRES 10 A 398 ASP ALA ASP LEU GLY ALA PHE GLY PHE ASP LEU LYS GLY SEQRES 11 A 398 TRP SER GLY GLY GLN ALA GLU TYR VAL LEU VAL PRO TYR SEQRES 12 A 398 ALA ASP TYR MET LEU LEU LYS PHE GLY ASP LYS GLU GLN SEQRES 13 A 398 ALA MET GLU LYS ILE LYS ASP LEU THR LEU ILE SER ASP SEQRES 14 A 398 ILE LEU PRO THR GLY PHE HIS GLY CYS VAL SER ALA GLY SEQRES 15 A 398 VAL LYS PRO GLY SER HIS VAL TYR ILE ALA GLY ALA GLY SEQRES 16 A 398 PRO VAL GLY ARG CYS ALA ALA ALA GLY ALA ARG LEU LEU SEQRES 17 A 398 GLY ALA ALA CYS VAL ILE VAL GLY ASP GLN ASN PRO GLU SEQRES 18 A 398 ARG LEU LYS LEU LEU SER ASP ALA GLY PHE GLU THR ILE SEQRES 19 A 398 ASP LEU ARG ASN SER ALA PRO LEU ARG ASP GLN ILE ASP SEQRES 20 A 398 GLN ILE LEU GLY LYS PRO GLU VAL ASP CYS GLY VAL ASP SEQRES 21 A 398 ALA VAL GLY PHE GLU ALA HIS GLY LEU GLY ASP GLU ALA SEQRES 22 A 398 ASN THR GLU THR PRO ASN GLY ALA LEU ASN SER LEU PHE SEQRES 23 A 398 ASP VAL VAL ARG ALA GLY GLY ALA ILE GLY ILE PRO GLY SEQRES 24 A 398 ILE TYR VAL GLY SER ASP PRO ASP PRO VAL ASN LYS ASP SEQRES 25 A 398 ALA GLY SER GLY ARG LEU HIS LEU ASP PHE GLY LYS MET SEQRES 26 A 398 TRP THR LYS SER ILE ARG ILE MET THR GLY MET ALA PRO SEQRES 27 A 398 VAL THR ASN TYR ASN ARG HIS LEU THR GLU ALA ILE LEU SEQRES 28 A 398 TRP ASP GLN MET PRO TYR LEU SER LYS VAL MET ASN ILE SEQRES 29 A 398 GLU VAL ILE THR LEU ASP GLN ALA PRO ASP GLY TYR ALA SEQRES 30 A 398 LYS PHE ASP LYS GLY SER PRO ALA LYS PHE VAL ILE ASP SEQRES 31 A 398 PRO HIS GLY MET LEU LYS ASN LYS SEQRES 1 B 398 ALA GLY ASN LYS SER VAL VAL TYR HIS GLY THR ARG ASP SEQRES 2 B 398 LEU ARG VAL GLU THR VAL PRO TYR PRO LYS LEU GLU HIS SEQRES 3 B 398 ASN ASN ARG LYS LEU GLU HIS ALA VAL ILE LEU LYS VAL SEQRES 4 B 398 VAL SER THR ASN ILE CYS GLY SER ASP GLN HIS ILE TYR SEQRES 5 B 398 ARG GLY ARG PHE ILE VAL PRO LYS GLY HIS VAL LEU GLY SEQRES 6 B 398 HIS GLU ILE THR GLY GLU VAL VAL GLU LYS GLY SER ASP SEQRES 7 B 398 VAL GLU LEU MET ASP ILE GLY ASP LEU VAL SER VAL PRO SEQRES 8 B 398 PHE ASN VAL ALA CYS GLY ARG CYS ARG ASN CYS LYS GLU SEQRES 9 B 398 ALA ARG SER ASP VAL CYS GLU ASN ASN LEU VAL ASN PRO SEQRES 10 B 398 ASP ALA ASP LEU GLY ALA PHE GLY PHE ASP LEU LYS GLY SEQRES 11 B 398 TRP SER GLY GLY GLN ALA GLU TYR VAL LEU VAL PRO TYR SEQRES 12 B 398 ALA ASP TYR MET LEU LEU LYS PHE GLY ASP LYS GLU GLN SEQRES 13 B 398 ALA MET GLU LYS ILE LYS ASP LEU THR LEU ILE SER ASP SEQRES 14 B 398 ILE LEU PRO THR GLY PHE HIS GLY CYS VAL SER ALA GLY SEQRES 15 B 398 VAL LYS PRO GLY SER HIS VAL TYR ILE ALA GLY ALA GLY SEQRES 16 B 398 PRO VAL GLY ARG CYS ALA ALA ALA GLY ALA ARG LEU LEU SEQRES 17 B 398 GLY ALA ALA CYS VAL ILE VAL GLY ASP GLN ASN PRO GLU SEQRES 18 B 398 ARG LEU LYS LEU LEU SER ASP ALA GLY PHE GLU THR ILE SEQRES 19 B 398 ASP LEU ARG ASN SER ALA PRO LEU ARG ASP GLN ILE ASP SEQRES 20 B 398 GLN ILE LEU GLY LYS PRO GLU VAL ASP CYS GLY VAL ASP SEQRES 21 B 398 ALA VAL GLY PHE GLU ALA HIS GLY LEU GLY ASP GLU ALA SEQRES 22 B 398 ASN THR GLU THR PRO ASN GLY ALA LEU ASN SER LEU PHE SEQRES 23 B 398 ASP VAL VAL ARG ALA GLY GLY ALA ILE GLY ILE PRO GLY SEQRES 24 B 398 ILE TYR VAL GLY SER ASP PRO ASP PRO VAL ASN LYS ASP SEQRES 25 B 398 ALA GLY SER GLY ARG LEU HIS LEU ASP PHE GLY LYS MET SEQRES 26 B 398 TRP THR LYS SER ILE ARG ILE MET THR GLY MET ALA PRO SEQRES 27 B 398 VAL THR ASN TYR ASN ARG HIS LEU THR GLU ALA ILE LEU SEQRES 28 B 398 TRP ASP GLN MET PRO TYR LEU SER LYS VAL MET ASN ILE SEQRES 29 B 398 GLU VAL ILE THR LEU ASP GLN ALA PRO ASP GLY TYR ALA SEQRES 30 B 398 LYS PHE ASP LYS GLY SER PRO ALA LYS PHE VAL ILE ASP SEQRES 31 B 398 PRO HIS GLY MET LEU LYS ASN LYS HET ZN A1001 1 HET ZN A1002 1 HET NAD A1403 44 HET ZN B1003 1 HET ZN B1004 1 HET NAD B2403 44 HETNAM ZN ZINC ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 ZN 4(ZN 2+) FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 9 HOH *266(H2 O) HELIX 1 1 CYS A 45 ARG A 53 1 9 HELIX 2 2 CYS A 99 GLU A 104 1 6 HELIX 3 3 ALA A 105 CYS A 110 5 6 HELIX 4 4 TYR A 143 LEU A 148 1 6 HELIX 5 5 ASP A 153 LYS A 160 1 8 HELIX 6 6 LYS A 160 THR A 165 1 6 HELIX 7 7 ASP A 169 ALA A 181 1 13 HELIX 8 8 GLY A 195 GLY A 209 1 15 HELIX 9 9 ASN A 219 ASP A 228 1 10 HELIX 10 10 PRO A 241 GLY A 251 1 11 HELIX 11 11 LEU A 269 ALA A 273 5 5 HELIX 12 12 ASN A 279 VAL A 288 1 10 HELIX 13 13 ASN A 310 SER A 315 1 6 HELIX 14 14 ASP A 321 LYS A 328 1 8 HELIX 15 15 PRO A 338 ASN A 341 5 4 HELIX 16 16 TYR A 342 TRP A 352 1 11 HELIX 17 17 PRO A 356 ASN A 363 1 8 HELIX 18 18 GLN A 371 LYS A 381 1 11 HELIX 19 19 CYS B 45 ARG B 53 1 9 HELIX 20 20 CYS B 99 GLU B 104 1 6 HELIX 21 21 ARG B 106 CYS B 110 5 5 HELIX 22 22 TYR B 143 LEU B 148 1 6 HELIX 23 23 ASP B 153 GLU B 159 1 7 HELIX 24 24 LYS B 160 THR B 165 1 6 HELIX 25 25 ASP B 169 SER B 180 1 12 HELIX 26 26 GLY B 195 LEU B 208 1 14 HELIX 27 27 ASN B 219 ASP B 228 1 10 HELIX 28 28 PRO B 241 GLY B 251 1 11 HELIX 29 29 LEU B 269 ALA B 273 5 5 HELIX 30 30 ASN B 279 VAL B 288 1 10 HELIX 31 31 LYS B 311 GLY B 316 5 6 HELIX 32 32 ASP B 321 LYS B 328 1 8 HELIX 33 33 PRO B 338 ASN B 341 5 4 HELIX 34 34 TYR B 342 TRP B 352 1 11 HELIX 35 35 PRO B 356 ASN B 363 1 8 HELIX 36 36 GLN B 371 LYS B 381 1 11 SHEET 1 A 2 ASN A 3 GLY A 10 0 SHEET 2 A 2 ASP A 13 VAL A 19 -1 O VAL A 19 N ASN A 3 SHEET 1 B 2 GLU A 25 HIS A 26 0 SHEET 2 B 2 ARG A 29 LYS A 30 -1 O ARG A 29 N HIS A 26 SHEET 1 C 5 TYR A 138 VAL A 141 0 SHEET 2 C 5 VAL A 35 ASN A 43 -1 N VAL A 35 O VAL A 141 SHEET 3 C 5 ILE A 68 LYS A 75 -1 O GLU A 71 N LYS A 38 SHEET 4 C 5 LEU A 87 SER A 89 -1 O VAL A 88 N GLY A 70 SHEET 5 C 5 LEU A 149 LYS A 150 -1 O LEU A 149 N SER A 89 SHEET 1 D 4 TYR A 138 VAL A 141 0 SHEET 2 D 4 VAL A 35 ASN A 43 -1 N VAL A 35 O VAL A 141 SHEET 3 D 4 LYS A 386 ILE A 389 -1 O ILE A 389 N THR A 42 SHEET 4 D 4 ILE A 364 ILE A 367 1 N GLU A 365 O VAL A 388 SHEET 1 E12 GLU A 232 ASP A 235 0 SHEET 2 E12 CYS A 212 ASP A 217 1 N VAL A 215 O GLU A 232 SHEET 3 E12 HIS A 188 ALA A 192 1 N VAL A 189 O CYS A 212 SHEET 4 E12 VAL A 255 ASP A 260 1 O VAL A 259 N ALA A 192 SHEET 5 E12 VAL A 289 GLY A 296 1 O GLY A 296 N GLY A 258 SHEET 6 E12 ARG A 331 MET A 333 1 O ARG A 331 N ILE A 295 SHEET 7 E12 ARG B 331 THR B 334 -1 O ILE B 332 N ILE A 332 SHEET 8 E12 VAL B 289 ILE B 297 1 N ILE B 295 O ARG B 331 SHEET 9 E12 VAL B 255 ASP B 260 1 N ASP B 260 O GLY B 296 SHEET 10 E12 HIS B 188 ALA B 192 1 N ALA B 192 O VAL B 259 SHEET 11 E12 CYS B 212 ASP B 217 1 O ILE B 214 N VAL B 189 SHEET 12 E12 GLU B 232 ASP B 235 1 O GLU B 232 N VAL B 215 SHEET 1 F 2 LEU A 318 LEU A 320 0 SHEET 2 F 2 LEU B 318 LEU B 320 -1 O LEU B 320 N LEU A 318 SHEET 1 G 2 ASN B 3 GLY B 10 0 SHEET 2 G 2 ASP B 13 VAL B 19 -1 O ASP B 13 N GLY B 10 SHEET 1 H 5 TYR B 138 VAL B 141 0 SHEET 2 H 5 VAL B 35 ASN B 43 -1 N LEU B 37 O VAL B 139 SHEET 3 H 5 ILE B 68 LYS B 75 -1 O GLU B 71 N LYS B 38 SHEET 4 H 5 LEU B 87 SER B 89 -1 O VAL B 88 N GLY B 70 SHEET 5 H 5 LEU B 149 LYS B 150 -1 O LEU B 149 N SER B 89 SHEET 1 I 4 TYR B 138 VAL B 141 0 SHEET 2 I 4 VAL B 35 ASN B 43 -1 N LEU B 37 O VAL B 139 SHEET 3 I 4 LYS B 386 ILE B 389 -1 O ILE B 389 N THR B 42 SHEET 4 I 4 ILE B 364 ILE B 367 1 N GLU B 365 O LYS B 386 LINK SG CYS A 45 ZN ZN A1002 1555 1555 2.33 LINK NE2 HIS A 66 ZN ZN A1002 1555 1555 2.16 LINK SG CYS A 96 ZN ZN A1001 1555 1555 2.35 LINK SG CYS A 99 ZN ZN A1001 1555 1555 2.35 LINK SG CYS A 102 ZN ZN A1001 1555 1555 2.34 LINK SG CYS A 110 ZN ZN A1001 1555 1555 2.34 LINK OD2 ASP A 169 ZN ZN A1002 1555 1555 1.95 LINK SG CYS B 45 ZN ZN B1004 1555 1555 2.33 LINK NE2 HIS B 66 ZN ZN B1004 1555 1555 2.07 LINK SG CYS B 96 ZN ZN B1003 1555 1555 2.35 LINK SG CYS B 99 ZN ZN B1003 1555 1555 2.35 LINK SG CYS B 102 ZN ZN B1003 1555 1555 2.34 LINK SG CYS B 110 ZN ZN B1003 1555 1555 2.35 LINK OD2 ASP B 169 ZN ZN B1004 1555 1555 1.98 CISPEP 1 LEU A 128 LYS A 129 0 -10.07 CISPEP 2 LEU B 128 LYS B 129 0 -12.46 SITE 1 AC1 25 GLY A 46 SER A 47 HIS A 50 PHE A 92 SITE 2 AC1 25 ASP A 169 THR A 173 GLY A 193 GLY A 195 SITE 3 AC1 25 VAL A 197 ASP A 217 GLN A 218 ARG A 222 SITE 4 AC1 25 LEU A 236 ALA A 261 VAL A 262 HIS A 267 SITE 5 AC1 25 PRO A 298 ILE A 300 ALA A 337 HOH A1411 SITE 6 AC1 25 HOH A1427 HOH A1453 HOH A1454 HOH A1532 SITE 7 AC1 25 HOH A1539 SITE 1 AC2 24 GLY B 46 SER B 47 HIS B 50 PHE B 92 SITE 2 AC2 24 ASP B 169 THR B 173 GLY B 193 GLY B 195 SITE 3 AC2 24 PRO B 196 VAL B 197 ASP B 217 GLN B 218 SITE 4 AC2 24 ARG B 222 LEU B 236 ALA B 261 VAL B 262 SITE 5 AC2 24 HIS B 267 PRO B 298 ILE B 300 ALA B 337 SITE 6 AC2 24 HOH B2406 HOH B2451 HOH B2501 HOH B2522 SITE 1 AC3 4 CYS A 96 CYS A 99 CYS A 102 CYS A 110 SITE 1 AC4 3 CYS A 45 HIS A 66 ASP A 169 SITE 1 AC5 4 CYS B 96 CYS B 99 CYS B 102 CYS B 110 SITE 1 AC6 3 CYS B 45 HIS B 66 ASP B 169 CRYST1 90.229 90.229 226.689 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011083 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011083 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004411 0.00000