HEADER HYDROLASE 29-MAY-06 2DQS TITLE CRYSTAL STRUCTURE OF THE CALCIUM PUMP WITH AMPPCP IN THE ABSENCE OF TITLE 2 CALCIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CALCIUM PUMP 1, SERCA1, SR CA(2+)-ATPASE 1, CALCIUM- COMPND 5 TRANSPORTING ATPASE SARCOPLASMIC RETICULUM TYPE, FAST TWITCH SKELETAL COMPND 6 MUSCLE ISOFORM, ENDOPLASMIC RETICULUM CLASS 1/2 CA(2+) ATPASE; COMPND 7 EC: 3.6.3.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: SKELETAL MUSCLE (WHITE) KEYWDS MEMBRANE PROTEIN, P-TYPE ATPASE, AMPPCP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.TOYOSHIMA,Y.NORIMATSU,J.TSUEDA REVDAT 6 30-OCT-24 2DQS 1 REMARK REVDAT 5 25-OCT-23 2DQS 1 COMPND REMARK HETNAM LINK REVDAT 4 13-JUL-11 2DQS 1 VERSN REVDAT 3 19-JAN-11 2DQS 1 HETSYN REVDAT 2 06-MAY-08 2DQS 1 COMPND VERSN REVDAT 1 05-JUN-07 2DQS 0 JRNL AUTH C.TOYOSHIMA,Y.NORIMATSU,J.TSUEDA JRNL TITL CRYSTAL STRUCTURE OF THE CALCIUM PUMP WITH A BOUND ATP JRNL TITL 2 ANALOGUE IN THE ABSENCE OF CALCIUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.TOYOSHIMA,M.NAKASAKO,H.NOMURA,H.OGAWA REMARK 1 TITL CRYSTAL STRUCTURE OF THE CALCIUM PUMP OF SARCOPLASMIC REMARK 1 TITL 2 RETICULUM AT 2.6 A RESOLUTION REMARK 1 REF NATURE V. 405 647 2000 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 10864315 REMARK 1 DOI 10.1038/35015017 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.TOYOSHIMA,H.NOMURA REMARK 1 TITL STRUCTURAL CHANGES IN THE CALCIUM PUMP ACCOMPANYING THE REMARK 1 TITL 2 DISSOCIATION OF CALCIUM REMARK 1 REF NATURE V. 418 605 2002 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 12167852 REMARK 1 DOI 10.1038/NATURE00944 REMARK 1 REFERENCE 3 REMARK 1 AUTH C.TOYOSHIMA,T.MIZUTANI REMARK 1 TITL CRYSTAL STRUCTURE OF THE CALCIUM PUMP WITH A BOUND ATP REMARK 1 TITL 2 ANALOGUE REMARK 1 REF NATURE V. 430 529 2004 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 15229613 REMARK 1 DOI 10.1038/NATURE02680 REMARK 1 REFERENCE 4 REMARK 1 AUTH C.TOYOSHIMA,H.NOMURA,T.TSUDA REMARK 1 TITL LUMENAL GATING MECHANISM REVEALED IN CALCIUM PUMP CRYSTAL REMARK 1 TITL 2 STRUCTURES WITH PHOSPHATE ANALOGUES REMARK 1 REF NATURE V. 432 361 2004 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 15448704 REMARK 1 DOI 10.1038/NATURE02981 REMARK 1 REFERENCE 5 REMARK 1 AUTH K.OBARA,N.MIYASHITA,C.XU,I.TOYOSHIMA,Y.SUGITA,G.INESI, REMARK 1 AUTH 2 C.TOYOSHIMA REMARK 1 TITL STRUCTURAL ROLE OF COUNTERTRANSPORT REVEALED IN CA2+ PUMP REMARK 1 TITL 2 CRYSTAL STRUCTURE IN THE ABSENCE OF CA2+ REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 102 14489 2005 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 16150713 REMARK 1 DOI 10.1073/PNAS.0506222102 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3083694.270 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 54061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2738 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8218 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE : 0.4240 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 444 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7674 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 232 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.71000 REMARK 3 B22 (A**2) : 5.71000 REMARK 3 B33 (A**2) : -11.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.48 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.63 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.102 REMARK 3 BOND ANGLES (DEGREES) : 2.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 3.110 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.890 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.110 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.560 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.810 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 63.90 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2DQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025733. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8 REMARK 200 MONOCHROMATOR : ROTATED-INCLINED DOUBLE- CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54985 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 34.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.66000 REMARK 200 FOR SHELL : 3.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2AGV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.10, MICRODIALYSIS, TEMPERATURE REMARK 280 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 294.87800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.71050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.71050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 147.43900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.71050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.71050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 442.31700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.71050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.71050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 147.43900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.71050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.71050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 442.31700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 294.87800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 195 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 4 -32.34 -38.70 REMARK 500 GLU A 40 148.49 -177.12 REMARK 500 TRP A 77 -74.60 -87.78 REMARK 500 PHE A 78 43.78 -67.27 REMARK 500 ALA A 112 103.71 -170.89 REMARK 500 ALA A 132 -12.32 -45.74 REMARK 500 SER A 170 -175.25 -67.78 REMARK 500 THR A 345 119.17 -38.24 REMARK 500 PRO A 391 30.21 -69.62 REMARK 500 ASP A 399 -0.25 71.41 REMARK 500 THR A 430 -85.36 -69.31 REMARK 500 GLU A 439 130.95 -38.42 REMARK 500 ASN A 456 13.06 51.44 REMARK 500 THR A 457 99.73 -45.52 REMARK 500 SER A 463 -162.38 -63.42 REMARK 500 GLU A 486 157.93 -44.81 REMARK 500 ALA A 501 -72.47 -72.37 REMARK 500 SER A 504 -153.33 -81.32 REMARK 500 ARG A 505 87.86 -63.50 REMARK 500 THR A 569 78.14 -114.82 REMARK 500 LEU A 578 42.78 -91.17 REMARK 500 GLU A 588 54.85 -99.38 REMARK 500 LEU A 663 -47.34 -29.75 REMARK 500 ASP A 703 -18.69 -153.25 REMARK 500 ASP A 738 -2.56 71.19 REMARK 500 THR A 778 23.78 -68.49 REMARK 500 ALA A 779 -50.44 -140.86 REMARK 500 PRO A 789 -72.53 -33.60 REMARK 500 MET A 857 -78.00 -130.23 REMARK 500 GLU A 860 -82.45 -65.51 REMARK 500 ASP A 861 -9.52 -43.88 REMARK 500 PRO A 863 96.45 -43.46 REMARK 500 HIS A 868 3.11 -56.87 REMARK 500 GLN A 869 73.78 54.52 REMARK 500 MET A 874 17.08 -146.08 REMARK 500 GLU A 878 -51.13 -121.30 REMARK 500 PHE A 883 -99.25 -49.85 REMARK 500 ASP A 887 108.44 -166.68 REMARK 500 ASP A 951 -60.91 -9.04 REMARK 500 ALA A 961 155.74 -43.63 REMARK 500 SER A 974 -66.44 -93.69 REMARK 500 LEU A 975 -30.57 -38.68 REMARK 500 LEU A 992 6.32 -152.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PTY A 1011 REMARK 610 PTY A 1012 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ACP A1002 O1B REMARK 620 2 ACP A1002 O1A 83.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 997 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TG1 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PTY A 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PTY A 1012 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SU4 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH BOUND CALCIUM REMARK 900 RELATED ID: 1IWO RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT CALCIUM REMARK 900 RELATED ID: 1VFP RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH BOUND AMPPCP AND CALCIUM REMARK 900 RELATED ID: 1WPE RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH BOUND ALUMINIUM FLUORIDE, ADP AND CALCIUM REMARK 900 RELATED ID: 1WPG RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH BOUND MAGNESIUM FLUORIDE AND THAPSIGARGIN IN REMARK 900 THE ABSENCE OF CALCIUM REMARK 900 RELATED ID: 2AGV RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH BOUND BHQ AND THAPSIGARGIN IN THE ABSENCE OF REMARK 900 CALCIUM REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE C-TERMINAL RESIDUES IN UNP ENTRY P04191 ARE FROM 994 TO REMARK 999 1001, DPEDERRK. REMARK 999 IN ISOFORM SERCA1A, THERE IS ONLY ONE C-TERMINAL RESIDUE REMARK 999 994 GLY. DBREF 2DQS A 1 993 UNP P04191 AT2A1_RABIT 1 993 SEQADV 2DQS GLY A 994 UNP P04191 SEE REMARK 999 SEQRES 1 A 995 ACE MET GLU ALA ALA HIS SER LYS SER THR GLU GLU CYS SEQRES 2 A 995 LEU ALA TYR PHE GLY VAL SER GLU THR THR GLY LEU THR SEQRES 3 A 995 PRO ASP GLN VAL LYS ARG HIS LEU GLU LYS TYR GLY HIS SEQRES 4 A 995 ASN GLU LEU PRO ALA GLU GLU GLY LYS SER LEU TRP GLU SEQRES 5 A 995 LEU VAL ILE GLU GLN PHE GLU ASP LEU LEU VAL ARG ILE SEQRES 6 A 995 LEU LEU LEU ALA ALA CYS ILE SER PHE VAL LEU ALA TRP SEQRES 7 A 995 PHE GLU GLU GLY GLU GLU THR ILE THR ALA PHE VAL GLU SEQRES 8 A 995 PRO PHE VAL ILE LEU LEU ILE LEU ILE ALA ASN ALA ILE SEQRES 9 A 995 VAL GLY VAL TRP GLN GLU ARG ASN ALA GLU ASN ALA ILE SEQRES 10 A 995 GLU ALA LEU LYS GLU TYR GLU PRO GLU MET GLY LYS VAL SEQRES 11 A 995 TYR ARG ALA ASP ARG LYS SER VAL GLN ARG ILE LYS ALA SEQRES 12 A 995 ARG ASP ILE VAL PRO GLY ASP ILE VAL GLU VAL ALA VAL SEQRES 13 A 995 GLY ASP LYS VAL PRO ALA ASP ILE ARG ILE LEU SER ILE SEQRES 14 A 995 LYS SER THR THR LEU ARG VAL ASP GLN SER ILE LEU THR SEQRES 15 A 995 GLY GLU SER VAL SER VAL ILE LYS HIS THR GLU PRO VAL SEQRES 16 A 995 PRO ASP PRO ARG ALA VAL ASN GLN ASP LYS LYS ASN MET SEQRES 17 A 995 LEU PHE SER GLY THR ASN ILE ALA ALA GLY LYS ALA LEU SEQRES 18 A 995 GLY ILE VAL ALA THR THR GLY VAL SER THR GLU ILE GLY SEQRES 19 A 995 LYS ILE ARG ASP GLN MET ALA ALA THR GLU GLN ASP LYS SEQRES 20 A 995 THR PRO LEU GLN GLN LYS LEU ASP GLU PHE GLY GLU GLN SEQRES 21 A 995 LEU SER LYS VAL ILE SER LEU ILE CYS VAL ALA VAL TRP SEQRES 22 A 995 LEU ILE ASN ILE GLY HIS PHE ASN ASP PRO VAL HIS GLY SEQRES 23 A 995 GLY SER TRP ILE ARG GLY ALA ILE TYR TYR PHE LYS ILE SEQRES 24 A 995 ALA VAL ALA LEU ALA VAL ALA ALA ILE PRO GLU GLY LEU SEQRES 25 A 995 PRO ALA VAL ILE THR THR CYS LEU ALA LEU GLY THR ARG SEQRES 26 A 995 ARG MET ALA LYS LYS ASN ALA ILE VAL ARG SER LEU PRO SEQRES 27 A 995 SER VAL GLU THR LEU GLY CYS THR SER VAL ILE CYS SER SEQRES 28 A 995 ASP LYS THR GLY THR LEU THR THR ASN GLN MET SER VAL SEQRES 29 A 995 CYS LYS MET PHE ILE ILE ASP LYS VAL ASP GLY ASP PHE SEQRES 30 A 995 CYS SER LEU ASN GLU PHE SER ILE THR GLY SER THR TYR SEQRES 31 A 995 ALA PRO GLU GLY GLU VAL LEU LYS ASN ASP LYS PRO ILE SEQRES 32 A 995 ARG SER GLY GLN PHE ASP GLY LEU VAL GLU LEU ALA THR SEQRES 33 A 995 ILE CYS ALA LEU CYS ASN ASP SER SER LEU ASP PHE ASN SEQRES 34 A 995 GLU THR LYS GLY VAL TYR GLU LYS VAL GLY GLU ALA THR SEQRES 35 A 995 GLU THR ALA LEU THR THR LEU VAL GLU LYS MET ASN VAL SEQRES 36 A 995 PHE ASN THR GLU VAL ARG ASN LEU SER LYS VAL GLU ARG SEQRES 37 A 995 ALA ASN ALA CYS ASN SER VAL ILE ARG GLN LEU MET LYS SEQRES 38 A 995 LYS GLU PHE THR LEU GLU PHE SER ARG ASP ARG LYS SER SEQRES 39 A 995 MET SER VAL TYR CYS SER PRO ALA LYS SER SER ARG ALA SEQRES 40 A 995 ALA VAL GLY ASN LYS MET PHE VAL LYS GLY ALA PRO GLU SEQRES 41 A 995 GLY VAL ILE ASP ARG CYS ASN TYR VAL ARG VAL GLY THR SEQRES 42 A 995 THR ARG VAL PRO MET THR GLY PRO VAL LYS GLU LYS ILE SEQRES 43 A 995 LEU SER VAL ILE LYS GLU TRP GLY THR GLY ARG ASP THR SEQRES 44 A 995 LEU ARG CYS LEU ALA LEU ALA THR ARG ASP THR PRO PRO SEQRES 45 A 995 LYS ARG GLU GLU MET VAL LEU ASP ASP SER SER ARG PHE SEQRES 46 A 995 MET GLU TYR GLU THR ASP LEU THR PHE VAL GLY VAL VAL SEQRES 47 A 995 GLY MET LEU ASP PRO PRO ARG LYS GLU VAL MET GLY SER SEQRES 48 A 995 ILE GLN LEU CYS ARG ASP ALA GLY ILE ARG VAL ILE MET SEQRES 49 A 995 ILE THR GLY ASP ASN LYS GLY THR ALA ILE ALA ILE CYS SEQRES 50 A 995 ARG ARG ILE GLY ILE PHE GLY GLU ASN GLU GLU VAL ALA SEQRES 51 A 995 ASP ARG ALA TYR THR GLY ARG GLU PHE ASP ASP LEU PRO SEQRES 52 A 995 LEU ALA GLU GLN ARG GLU ALA CYS ARG ARG ALA CYS CYS SEQRES 53 A 995 PHE ALA ARG VAL GLU PRO SER HIS LYS SER LYS ILE VAL SEQRES 54 A 995 GLU TYR LEU GLN SER TYR ASP GLU ILE THR ALA MET THR SEQRES 55 A 995 GLY ASP GLY VAL ASN ASP ALA PRO ALA LEU LYS LYS ALA SEQRES 56 A 995 GLU ILE GLY ILE ALA MET GLY SER GLY THR ALA VAL ALA SEQRES 57 A 995 LYS THR ALA SER GLU MET VAL LEU ALA ASP ASP ASN PHE SEQRES 58 A 995 SER THR ILE VAL ALA ALA VAL GLU GLU GLY ARG ALA ILE SEQRES 59 A 995 TYR ASN ASN MET LYS GLN PHE ILE ARG TYR LEU ILE SER SEQRES 60 A 995 SER ASN VAL GLY GLU VAL VAL CYS ILE PHE LEU THR ALA SEQRES 61 A 995 ALA LEU GLY LEU PRO GLU ALA LEU ILE PRO VAL GLN LEU SEQRES 62 A 995 LEU TRP VAL ASN LEU VAL THR ASP GLY LEU PRO ALA THR SEQRES 63 A 995 ALA LEU GLY PHE ASN PRO PRO ASP LEU ASP ILE MET ASP SEQRES 64 A 995 ARG PRO PRO ARG SER PRO LYS GLU PRO LEU ILE SER GLY SEQRES 65 A 995 TRP LEU PHE PHE ARG TYR MET ALA ILE GLY GLY TYR VAL SEQRES 66 A 995 GLY ALA ALA THR VAL GLY ALA ALA ALA TRP TRP PHE MET SEQRES 67 A 995 TYR ALA GLU ASP GLY PRO GLY VAL THR TYR HIS GLN LEU SEQRES 68 A 995 THR HIS PHE MET GLN CYS THR GLU ASP HIS PRO HIS PHE SEQRES 69 A 995 GLU GLY LEU ASP CYS GLU ILE PHE GLU ALA PRO GLU PRO SEQRES 70 A 995 MET THR MET ALA LEU SER VAL LEU VAL THR ILE GLU MET SEQRES 71 A 995 CYS ASN ALA LEU ASN SER LEU SER GLU ASN GLN SER LEU SEQRES 72 A 995 MET ARG MET PRO PRO TRP VAL ASN ILE TRP LEU LEU GLY SEQRES 73 A 995 SER ILE CYS LEU SER MET SER LEU HIS PHE LEU ILE LEU SEQRES 74 A 995 TYR VAL ASP PRO LEU PRO MET ILE PHE LYS LEU LYS ALA SEQRES 75 A 995 LEU ASP LEU THR GLN TRP LEU MET VAL LEU LYS ILE SER SEQRES 76 A 995 LEU PRO VAL ILE GLY LEU ASP GLU ILE LEU LYS PHE ILE SEQRES 77 A 995 ALA ARG ASN TYR LEU GLU GLY HET ACE A 0 3 HET MG A 997 1 HET NA A1000 1 HET MG A1001 1 HET ACP A1002 31 HET TG1 A1003 46 HET PTY A1011 19 HET PTY A1012 19 HETNAM ACE ACETYL GROUP HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM TG1 OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, 6BETA, HETNAM 2 TG1 6ABETA, 7BETA, 8ALPHA(Z), 9BALPHA]]-6-(ACETYLOXY)-2,3, HETNAM 3 TG1 -3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9- HETNAM 4 TG1 TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4- HETNAM 5 TG1 (1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER HETNAM PTY PHOSPHATIDYLETHANOLAMINE HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE HETSYN TG1 THAPSIGARGIN FORMUL 1 ACE C2 H4 O FORMUL 2 MG 2(MG 2+) FORMUL 3 NA NA 1+ FORMUL 5 ACP C11 H18 N5 O12 P3 FORMUL 6 TG1 C34 H50 O12 FORMUL 7 PTY 2(C40 H80 N O8 P) FORMUL 9 HOH *232(H2 O) HELIX 1 1 SER A 8 GLY A 17 1 10 HELIX 2 2 THR A 25 GLY A 37 1 13 HELIX 3 3 SER A 48 GLU A 55 1 8 HELIX 4 4 GLN A 56 GLU A 58 5 3 HELIX 5 5 ASP A 59 PHE A 78 1 20 HELIX 6 6 GLU A 83 PHE A 88 1 6 HELIX 7 7 PHE A 88 ASN A 111 1 24 HELIX 8 8 ASN A 114 LYS A 120 1 7 HELIX 9 9 GLU A 121 GLU A 123 5 3 HELIX 10 10 ARG A 143 ILE A 145 5 3 HELIX 11 11 GLN A 177 GLY A 182 1 6 HELIX 12 12 VAL A 200 LYS A 204 5 5 HELIX 13 13 THR A 226 SER A 229 5 4 HELIX 14 14 THR A 230 THR A 242 1 13 HELIX 15 15 THR A 247 ILE A 274 1 28 HELIX 16 16 ASN A 275 PHE A 279 5 5 HELIX 17 17 TRP A 288 ILE A 307 1 20 HELIX 18 18 GLY A 310 LYS A 328 1 19 HELIX 19 19 PRO A 337 CYS A 344 1 8 HELIX 20 20 ARG A 403 GLN A 406 5 4 HELIX 21 21 PHE A 407 CYS A 420 1 14 HELIX 22 22 GLU A 439 ASN A 453 1 15 HELIX 23 23 SER A 463 ALA A 468 1 6 HELIX 24 24 ASN A 469 GLN A 477 1 9 HELIX 25 25 ALA A 517 ARG A 524 1 8 HELIX 26 26 THR A 538 GLY A 555 1 18 HELIX 27 27 LYS A 572 MET A 576 5 5 HELIX 28 28 ASP A 580 SER A 582 5 3 HELIX 29 29 ARG A 583 GLU A 588 1 6 HELIX 30 30 GLU A 606 ALA A 617 1 12 HELIX 31 31 ASN A 628 ILE A 639 1 12 HELIX 32 32 GLY A 655 LEU A 661 1 7 HELIX 33 33 PRO A 662 ALA A 673 1 12 HELIX 34 34 SER A 682 SER A 693 1 12 HELIX 35 35 GLY A 704 ASN A 706 5 3 HELIX 36 36 ASP A 707 ALA A 714 1 8 HELIX 37 37 THR A 724 ALA A 730 1 7 HELIX 38 38 ASN A 739 LEU A 781 1 43 HELIX 39 39 ILE A 788 VAL A 798 1 11 HELIX 40 40 ASP A 800 GLY A 808 1 9 HELIX 41 41 SER A 830 TRP A 855 1 26 HELIX 42 42 GLU A 889 GLU A 892 5 4 HELIX 43 43 ALA A 893 ASN A 914 1 22 HELIX 44 44 PRO A 926 VAL A 929 5 4 HELIX 45 45 ASN A 930 VAL A 950 1 21 HELIX 46 46 ASP A 951 PHE A 957 1 7 HELIX 47 47 THR A 965 LEU A 975 1 11 HELIX 48 48 LEU A 975 TYR A 991 1 17 SHEET 1 A 6 GLN A 138 LYS A 141 0 SHEET 2 A 6 MET A 126 TYR A 130 -1 N VAL A 129 O GLN A 138 SHEET 3 A 6 ILE A 150 ALA A 154 -1 O GLU A 152 N LYS A 128 SHEET 4 A 6 LYS A 218 THR A 225 -1 O GLY A 221 N VAL A 151 SHEET 5 A 6 ASP A 162 ILE A 168 -1 N ARG A 164 O ILE A 222 SHEET 6 A 6 MET A 207 LEU A 208 -1 O LEU A 208 N ILE A 163 SHEET 1 B 3 VAL A 187 LYS A 189 0 SHEET 2 B 3 LEU A 173 ASP A 176 -1 N VAL A 175 O VAL A 187 SHEET 3 B 3 ASN A 213 ALA A 216 -1 O ASN A 213 N ASP A 176 SHEET 1 C 8 ALA A 331 VAL A 333 0 SHEET 2 C 8 MET A 733 LEU A 735 -1 O VAL A 734 N ILE A 332 SHEET 3 C 8 ILE A 716 MET A 720 1 N ALA A 719 O LEU A 735 SHEET 4 C 8 THR A 698 GLY A 702 1 N MET A 700 O ILE A 718 SHEET 5 C 8 VAL A 347 ASP A 351 1 N CYS A 349 O ALA A 699 SHEET 6 C 8 ARG A 620 THR A 625 1 O ILE A 622 N ILE A 348 SHEET 7 C 8 CYS A 675 ALA A 677 1 O PHE A 676 N MET A 623 SHEET 8 C 8 ALA A 652 THR A 654 1 N TYR A 653 O CYS A 675 SHEET 1 D10 LYS A 400 PRO A 401 0 SHEET 2 D10 VAL A 395 LYS A 397 -1 N LYS A 397 O LYS A 400 SHEET 3 D10 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 4 D10 SER A 362 ASP A 373 -1 N ILE A 368 O ASN A 380 SHEET 5 D10 CYS A 525 VAL A 530 1 O ARG A 529 N ILE A 369 SHEET 6 D10 LEU A 591 LEU A 600 1 O PHE A 593 N TYR A 527 SHEET 7 D10 ARG A 560 ARG A 567 -1 N LEU A 564 O GLY A 595 SHEET 8 D10 LYS A 511 GLY A 516 -1 N VAL A 514 O ALA A 565 SHEET 9 D10 SER A 493 PRO A 500 -1 N CYS A 498 O LYS A 511 SHEET 10 D10 MET A 479 SER A 488 -1 N LYS A 480 O SER A 499 SHEET 1 E 7 THR A 533 PRO A 536 0 SHEET 2 E 7 CYS A 525 VAL A 530 -1 N VAL A 528 O VAL A 535 SHEET 3 E 7 LEU A 591 LEU A 600 1 O PHE A 593 N TYR A 527 SHEET 4 E 7 SER A 362 ASP A 373 -1 N SER A 362 O LEU A 600 SHEET 5 E 7 PHE A 376 ILE A 384 -1 O ASN A 380 N ILE A 368 SHEET 6 E 7 VAL A 395 LYS A 397 -1 O LEU A 396 N SER A 383 SHEET 7 E 7 LYS A 400 PRO A 401 -1 O LYS A 400 N LYS A 397 SHEET 1 F 2 SER A 424 PHE A 427 0 SHEET 2 F 2 TYR A 434 VAL A 437 -1 O GLU A 435 N ASP A 426 SSBOND 1 CYS A 876 CYS A 888 1555 1555 2.03 LINK C ACE A 0 N MET A 1 1555 1555 1.33 LINK OD1 ASP A 703 MG MG A 997 1555 1555 2.27 LINK MG MG A1001 O1B ACP A1002 1555 1555 2.00 LINK MG MG A1001 O1A ACP A1002 1555 1555 2.30 SITE 1 AC1 3 ASP A 703 ASP A 707 HOH A2088 SITE 1 AC2 6 GLN A 244 LEU A 711 LYS A 712 ALA A 714 SITE 2 AC2 6 GLU A 732 HOH A2036 SITE 1 AC3 4 ACP A1002 HOH A2128 HOH A2140 HOH A2145 SITE 1 AC4 15 GLU A 442 PHE A 487 MET A 494 LYS A 515 SITE 2 AC4 15 GLY A 516 ALA A 517 ARG A 560 CYS A 561 SITE 3 AC4 15 LEU A 562 MG A1001 HOH A2128 HOH A2129 SITE 4 AC4 15 HOH A2139 HOH A2145 HOH A2161 SITE 1 AC5 14 GLU A 255 GLN A 259 LEU A 260 VAL A 263 SITE 2 AC5 14 ILE A 267 ALA A 306 ILE A 765 VAL A 769 SITE 3 AC5 14 VAL A 772 ILE A 829 PHE A 834 TYR A 837 SITE 4 AC5 14 MET A 838 HOH A2016 SITE 1 AC6 4 ILE A 97 GLN A 108 ALA A 313 THR A 316 SITE 1 AC7 5 LEU A 273 ILE A 274 ALA A 780 MET A 923 SITE 2 AC7 5 TRP A 928 CRYST1 71.421 71.421 589.756 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014001 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014001 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001696 0.00000 HETATM 1 C ACE A 0 66.268 -12.280 129.066 1.00 47.35 C HETATM 2 O ACE A 0 66.646 -13.370 129.525 1.00 50.72 O HETATM 3 CH3 ACE A 0 66.779 -11.792 127.727 1.00 46.90 C