HEADER TRANSCRIPTION/DNA 06-JUN-94 2DRP TITLE THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN TITLE 2 EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*CP*TP*AP*AP*TP*AP*AP*GP*GP*AP*TP*AP*AP*CP*GP*TP*C P*CP*G)-3'); COMPND 4 CHAIN: B, E; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*TP*CP*GP*GP*AP*CP*GP*TP*TP*AP*TP*CP*CP*TP*TP*AP*T P*TP*A)-3'); COMPND 9 CHAIN: C, F; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PROTEIN (TRAMTRACK DNA-BINDING DOMAIN); COMPND 13 CHAIN: A, D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 7 ORGANISM_COMMON: FRUIT FLY; SOURCE 8 ORGANISM_TAXID: 7227; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.FAIRALL,J.W.R.SCHWABE,L.CHAPMAN,J.T.FINCH,D.RHODES REVDAT 4 14-FEB-24 2DRP 1 REMARK LINK REVDAT 3 24-FEB-09 2DRP 1 VERSN REVDAT 2 01-APR-03 2DRP 1 JRNL REVDAT 1 31-AUG-94 2DRP 0 JRNL AUTH L.FAIRALL,J.W.SCHWABE,L.CHAPMAN,J.T.FINCH,D.RHODES JRNL TITL THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS JRNL TITL 2 AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITION. JRNL REF NATURE V. 366 483 1993 JRNL REFN ISSN 0028-0836 JRNL PMID 8247159 JRNL DOI 10.1038/366483A0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.FAIRALL,S.D.HARRISON,A.A.TRAVERS,D.RHODES REMARK 1 TITL SEQUENCE-SPECIFIC BINDING BY A TWO ZINC-FINGER PEPTIDE FROM REMARK 1 TITL 2 THE DROSOPHILA MELANOGASTER TRAMTRACK PROTEIN REMARK 1 REF J.MOL.BIOL. V. 226 349 1992 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.D.HARRISON,A.A.TRAVERS REMARK 1 TITL THE TRAMTRACK GENE ENCODES A DROSOPHILA FINGER PROTEIN THAT REMARK 1 TITL 2 INTERACTS WITH THE FTZ TRANSCRIPTIONAL REGULATORY REGION AND REMARK 1 TITL 3 SHOWS A NOVEL EMBRYONIC EXPRESSION PATTERN REMARK 1 REF EMBO J. V. 9 207 1990 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.D.HARRISON,A.A.TRAVERS REMARK 1 TITL IDENTIFICATION OF THE BINDING SITES FOR POTENTIAL REGULATORY REMARK 1 TITL 2 PROTEINS IN THE UPSTREAM ENHANCER ELEMENT OF THE DROSOPHILA REMARK 1 TITL 3 FUSHI TARAZU GENE REMARK 1 REF NUCLEIC ACIDS RES. V. 16 11403 1988 REMARK 1 REFN ISSN 0305-1048 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 11994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1067 REMARK 3 NUCLEIC ACID ATOMS : 1542 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 2.760 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DRP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS-NICOLET REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.00, SMALL TUBES REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.35000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.80000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.80000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.35000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 101 REMARK 465 GLU A 102 REMARK 465 ILE A 166 REMARK 465 MET D 101 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 117 CB OG REMARK 470 ASN A 137 CB CG OD1 ND2 REMARK 470 LYS A 165 CB CG CD CE NZ REMARK 470 LYS D 114 CB CG CD CE NZ REMARK 470 LYS D 165 CB CG CD CE NZ REMARK 470 ILE D 166 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC B 1 C5' DC B 1 C4' 0.043 REMARK 500 DT B 2 C5 DT B 2 C7 0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 1 N1 - C2 - O2 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC B 1 C3' - O3' - P ANGL. DEV. = 9.8 DEGREES REMARK 500 DT B 2 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DT B 2 O4' - C1' - C2' ANGL. DEV. = -5.3 DEGREES REMARK 500 DT B 2 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT B 2 C3' - O3' - P ANGL. DEV. = 9.3 DEGREES REMARK 500 DA B 7 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG B 8 O4' - C1' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DA B 13 O4' - C1' - C2' ANGL. DEV. = -6.1 DEGREES REMARK 500 DC B 14 O4' - C4' - C3' ANGL. DEV. = -4.0 DEGREES REMARK 500 DC B 17 O4' - C1' - C2' ANGL. DEV. = -7.3 DEGREES REMARK 500 DC B 17 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC B 17 N1 - C2 - O2 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC B 18 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG B 19 C4' - C3' - C2' ANGL. DEV. = -4.5 DEGREES REMARK 500 DG B 19 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC C 22 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DC C 22 O4' - C1' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DG C 23 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG C 24 C1' - O4' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 DG C 27 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT C 28 C1' - O4' - C4' ANGL. DEV. = -8.7 DEGREES REMARK 500 DT C 28 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 DT C 28 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 DT C 29 O4' - C1' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT C 31 C1' - O4' - C4' ANGL. DEV. = -8.6 DEGREES REMARK 500 DC C 32 N1 - C2 - O2 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC C 32 C3' - O3' - P ANGL. DEV. = 7.2 DEGREES REMARK 500 DC C 33 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT C 34 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DT C 35 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT C 35 C6 - C5 - C7 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT C 37 C4 - C5 - C6 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT C 37 N3 - C2 - O2 ANGL. DEV. = -3.9 DEGREES REMARK 500 DT C 38 O4' - C1' - C2' ANGL. DEV. = -6.2 DEGREES REMARK 500 DT C 38 O4' - C1' - N1 ANGL. DEV. = -4.2 DEGREES REMARK 500 DA C 39 O4' - C1' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DC E 1 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DT E 2 O4' - C1' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DT E 2 O4' - C1' - N1 ANGL. DEV. = -4.2 DEGREES REMARK 500 DT E 2 N3 - C2 - O2 ANGL. DEV. = -4.0 DEGREES REMARK 500 DT E 2 C6 - C5 - C7 ANGL. DEV. = -3.6 DEGREES REMARK 500 DA E 3 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT E 5 O4' - C1' - C2' ANGL. DEV. = -5.4 DEGREES REMARK 500 DT E 5 C6 - C5 - C7 ANGL. DEV. = -4.1 DEGREES REMARK 500 DA E 7 O4' - C1' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DA E 7 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG E 8 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA E 10 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT E 11 C1' - O4' - C4' ANGL. DEV. = -8.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 80 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 117 -5.96 66.14 REMARK 500 SER A 133 11.57 -146.75 REMARK 500 HIS A 134 -1.14 -140.51 REMARK 500 ASN A 137 34.81 72.87 REMARK 500 PHE A 145 -76.15 -93.27 REMARK 500 HIS A 164 -108.49 -106.27 REMARK 500 LYS D 114 49.08 -77.25 REMARK 500 VAL D 115 -53.07 -151.25 REMARK 500 VAL D 131 2.65 -60.27 REMARK 500 CYS D 146 6.33 -169.24 REMARK 500 PHE D 147 26.29 49.28 REMARK 500 LYS D 165 59.27 24.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC B 14 0.06 SIDE CHAIN REMARK 500 TYR D 120 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 171 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 113 SG REMARK 620 2 CYS A 116 SG 112.8 REMARK 620 3 HIS A 129 NE2 114.4 107.5 REMARK 620 4 HIS A 134 NE2 104.4 113.5 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 172 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 143 SG REMARK 620 2 CYS A 146 SG 107.2 REMARK 620 3 HIS A 159 NE2 107.3 106.5 REMARK 620 4 HIS A 164 NE2 104.5 123.0 107.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 173 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 113 SG REMARK 620 2 CYS D 116 SG 117.9 REMARK 620 3 HIS D 129 NE2 111.0 106.0 REMARK 620 4 HIS D 134 NE2 106.2 112.8 101.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 174 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 143 SG REMARK 620 2 CYS D 146 SG 110.8 REMARK 620 3 HIS D 159 NE2 106.8 111.5 REMARK 620 4 HIS D 164 NE2 104.2 119.6 102.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 174 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE EXPRESSED CONSTRUCT IS NUMBERED 104 - 166 CORRESPONDING REMARK 999 TO AMINO ACIDS 499 - 561 IN THE INTACT PROTEIN. RESIDUES REMARK 999 101 - 103 ARE FROM THE EXPRESSION VECTOR. THE DNA DUPLEX REMARK 999 IS NUMBERED 1 - 19 AND 21 - 39. DBREF 2DRP A 104 166 UNP P17789 TTKB_DROME 499 561 DBREF 2DRP D 104 166 UNP P17789 TTKB_DROME 499 561 DBREF 2DRP B 1 19 PDB 2DRP 2DRP 1 19 DBREF 2DRP C 21 39 PDB 2DRP 2DRP 21 39 DBREF 2DRP E 1 19 PDB 2DRP 2DRP 1 19 DBREF 2DRP F 21 39 PDB 2DRP 2DRP 21 39 SEQRES 1 B 19 DC DT DA DA DT DA DA DG DG DA DT DA DA SEQRES 2 B 19 DC DG DT DC DC DG SEQRES 1 C 19 DT DC DG DG DA DC DG DT DT DA DT DC DC SEQRES 2 C 19 DT DT DA DT DT DA SEQRES 1 E 19 DC DT DA DA DT DA DA DG DG DA DT DA DA SEQRES 2 E 19 DC DG DT DC DC DG SEQRES 1 F 19 DT DC DG DG DA DC DG DT DT DA DT DC DC SEQRES 2 F 19 DT DT DA DT DT DA SEQRES 1 A 66 MET GLU PHE THR LYS GLU GLY GLU HIS THR TYR ARG CYS SEQRES 2 A 66 LYS VAL CYS SER ARG VAL TYR THR HIS ILE SER ASN PHE SEQRES 3 A 66 CYS ARG HIS TYR VAL THR SER HIS LYS ARG ASN VAL LYS SEQRES 4 A 66 VAL TYR PRO CYS PRO PHE CYS PHE LYS GLU PHE THR ARG SEQRES 5 A 66 LYS ASP ASN MET THR ALA HIS VAL LYS ILE ILE HIS LYS SEQRES 6 A 66 ILE SEQRES 1 D 66 MET GLU PHE THR LYS GLU GLY GLU HIS THR TYR ARG CYS SEQRES 2 D 66 LYS VAL CYS SER ARG VAL TYR THR HIS ILE SER ASN PHE SEQRES 3 D 66 CYS ARG HIS TYR VAL THR SER HIS LYS ARG ASN VAL LYS SEQRES 4 D 66 VAL TYR PRO CYS PRO PHE CYS PHE LYS GLU PHE THR ARG SEQRES 5 D 66 LYS ASP ASN MET THR ALA HIS VAL LYS ILE ILE HIS LYS SEQRES 6 D 66 ILE HET ZN A 171 1 HET ZN A 172 1 HET ZN D 173 1 HET ZN D 174 1 HETNAM ZN ZINC ION FORMUL 7 ZN 4(ZN 2+) FORMUL 11 HOH *57(H2 O) HELIX 1 1 HIS A 122 HIS A 134 1 13 HELIX 2 2 ARG A 152 HIS A 164 1 13 HELIX 3 3 HIS D 122 HIS D 134 1 13 HELIX 4 4 ARG D 152 HIS D 164 1 13 SHEET 1 A 3 THR A 104 GLY A 107 0 SHEET 2 A 3 THR A 110 ARG A 112 -1 O THR A 110 N GLU A 106 SHEET 3 A 3 VAL A 119 TYR A 120 -1 N TYR A 120 O TYR A 111 SHEET 1 B 2 TYR A 141 PRO A 142 0 SHEET 2 B 2 GLU A 149 PHE A 150 -1 O PHE A 150 N TYR A 141 SHEET 1 C 3 PHE D 103 GLY D 107 0 SHEET 2 C 3 THR D 110 CYS D 113 -1 O THR D 110 N GLU D 106 SHEET 3 C 3 VAL D 119 TYR D 120 -1 N TYR D 120 O TYR D 111 SHEET 1 D 2 TYR D 141 PRO D 142 0 SHEET 2 D 2 GLU D 149 PHE D 150 -1 O PHE D 150 N TYR D 141 LINK SG CYS A 113 ZN ZN A 171 1555 1555 2.28 LINK SG CYS A 116 ZN ZN A 171 1555 1555 2.27 LINK NE2 HIS A 129 ZN ZN A 171 1555 1555 1.99 LINK NE2 HIS A 134 ZN ZN A 171 1555 1555 1.96 LINK SG CYS A 143 ZN ZN A 172 1555 1555 2.29 LINK SG CYS A 146 ZN ZN A 172 1555 1555 2.28 LINK NE2 HIS A 159 ZN ZN A 172 1555 1555 2.02 LINK NE2 HIS A 164 ZN ZN A 172 1555 1555 1.99 LINK SG CYS D 113 ZN ZN D 173 1555 1555 2.24 LINK SG CYS D 116 ZN ZN D 173 1555 1555 2.29 LINK NE2 HIS D 129 ZN ZN D 173 1555 1555 1.98 LINK NE2 HIS D 134 ZN ZN D 173 1555 1555 1.99 LINK SG CYS D 143 ZN ZN D 174 1555 1555 2.26 LINK SG CYS D 146 ZN ZN D 174 1555 1555 2.28 LINK NE2 HIS D 159 ZN ZN D 174 1555 1555 2.03 LINK NE2 HIS D 164 ZN ZN D 174 1555 1555 1.95 SITE 1 AC1 4 CYS A 113 CYS A 116 HIS A 129 HIS A 134 SITE 1 AC2 4 CYS A 143 CYS A 146 HIS A 159 HIS A 164 SITE 1 AC3 4 CYS D 113 CYS D 116 HIS D 129 HIS D 134 SITE 1 AC4 4 CYS D 143 CYS D 146 HIS D 159 HIS D 164 CRYST1 60.700 64.600 117.600 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016474 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008503 0.00000