HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 01-JUL-06 2DSM TITLE NMR STRUCTURE OF BACILLUS SUBTILIS PROTEIN YQAI, NORTHEAST STRUCTURAL TITLE 2 GENOMICS TARGET SR450 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YQAI; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YQAI OR BSU26300; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (LAMDA DE3) PMGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS HOMODIMER, DOMAIN SWAPPED DIMER, INTER-DOMAIN BETA SHEET, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,J.R.CORT,D.WANG,H.JANUA,K.CUNNINGHAM,L.C.MA,R.XIAO,J.LIU, AUTHOR 2 M.BARAN,G.V.T.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE,M.A.KENNEDY, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 09-MAR-22 2DSM 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DSM 1 VERSN REVDAT 1 26-AUG-06 2DSM 0 JRNL AUTH T.A.RAMELOT,J.R.CORT,D.WANG,H.JANUA,K.CUNNINGHAM,L.C.MA, JRNL AUTH 2 R.XIAO,J.LIU,M.BARAN,G.V.T.SWAPNA,T.B.ACTON,B.ROST, JRNL AUTH 3 G.T.MONTELIONE,M.A.KENNEDY JRNL TITL NMR STRUCTURE OF BACILLUS SUBTILIS PROTEIN YQAI, NORTHEAST JRNL TITL 2 STRUCTURAL GENOMICS TARGET SR450 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR XPLOR-NIH-2.11.2, CNS 1.1 REMARK 3 AUTHORS : BRUNGER (X-PLOR), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DSM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000025795. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM YQAI, U-15N, 13C; 20MM REMARK 210 MES, 100MM NACL, 5MM CACL2, 10MM REMARK 210 DTT, 0.02% NAN3, 95% D2O, 5% D2O; REMARK 210 1.0MM YQAI, U-15N, 13C; 20MM REMARK 210 MES, 100MM NACL, 5MM CACL2, 10MM REMARK 210 DTT, 0.02% NAN3, 100% D2O; 1.4MM REMARK 210 YQAI, U-15N, 5%-13C, 20MM MES, REMARK 210 100MM NACL, 5MM CACL2, 10MM DTT, REMARK 210 0.02% NAN3, 95% D2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 4D_13C/15N- REMARK 210 SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.1, NMRPIPE LINUX9, VNMR REMARK 210 6.1C, AUTOSTRUCTURE 2.1.1 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 12 -87.98 65.90 REMARK 500 1 ASP A 19 23.17 -143.47 REMARK 500 1 ASP A 27 -95.99 -93.62 REMARK 500 1 GLU A 28 126.47 177.42 REMARK 500 1 GLN A 55 -67.46 -103.12 REMARK 500 1 PHE A 58 -153.88 54.60 REMARK 500 1 GLN A 64 -43.47 71.86 REMARK 500 1 GLU A 66 73.92 56.88 REMARK 500 1 HIS A 69 -95.98 40.70 REMARK 500 1 HIS A 70 -28.47 -150.94 REMARK 500 1 HIS A 71 -49.77 77.16 REMARK 500 1 GLU B 3 -47.85 75.21 REMARK 500 1 PRO B 5 92.91 -63.71 REMARK 500 1 THR B 18 -80.09 -84.42 REMARK 500 1 ASP B 23 -165.85 -79.89 REMARK 500 1 ASP B 27 -93.38 -86.20 REMARK 500 1 GLU B 28 121.99 168.81 REMARK 500 1 PRO B 31 18.15 -68.58 REMARK 500 1 LEU B 56 37.37 76.59 REMARK 500 1 LYS B 61 78.72 -116.29 REMARK 500 2 GLU A 3 -67.35 -137.62 REMARK 500 2 ASP A 13 -55.58 -177.88 REMARK 500 2 GLU A 17 94.87 64.79 REMARK 500 2 ASP A 27 -89.81 -95.80 REMARK 500 2 GLU A 28 142.05 176.54 REMARK 500 2 GLU A 54 -60.12 -93.68 REMARK 500 2 GLN A 55 -67.68 -92.15 REMARK 500 2 PHE A 58 -153.75 61.33 REMARK 500 2 ALA A 63 -88.18 58.45 REMARK 500 2 GLN A 64 17.57 -151.94 REMARK 500 2 HIS A 67 42.35 -141.63 REMARK 500 2 HIS A 69 143.88 72.47 REMARK 500 2 THR B 16 -162.57 54.34 REMARK 500 2 THR B 18 -80.55 70.56 REMARK 500 2 ASP B 27 -85.74 -71.83 REMARK 500 2 GLU B 28 157.82 172.84 REMARK 500 2 GLN B 55 -68.20 -99.07 REMARK 500 2 PHE B 58 -158.43 58.70 REMARK 500 2 HIS B 67 20.63 49.52 REMARK 500 2 HIS B 70 49.43 -95.24 REMARK 500 3 GLU A 3 -71.64 -67.85 REMARK 500 3 ASN A 4 98.87 61.85 REMARK 500 3 LYS A 14 141.26 177.06 REMARK 500 3 THR A 18 -92.45 49.01 REMARK 500 3 ALA A 63 32.51 -70.22 REMARK 500 3 HIS A 71 -41.16 176.62 REMARK 500 3 ASN B 4 95.05 -172.13 REMARK 500 3 ASP B 13 -149.50 -170.40 REMARK 500 3 LYS B 14 -68.13 76.39 REMARK 500 3 THR B 18 -82.23 -90.30 REMARK 500 REMARK 500 THIS ENTRY HAS 395 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SR450 RELATED DB: TARGETDB DBREF 2DSM A 1 64 UNP P45906 YQAI_BACSU 1 64 DBREF 2DSM B 1 64 UNP P45906 YQAI_BACSU 1 64 SEQADV 2DSM LEU A 65 UNP P45906 EXPRESSION TAG SEQADV 2DSM GLU A 66 UNP P45906 EXPRESSION TAG SEQADV 2DSM HIS A 67 UNP P45906 EXPRESSION TAG SEQADV 2DSM HIS A 68 UNP P45906 EXPRESSION TAG SEQADV 2DSM HIS A 69 UNP P45906 EXPRESSION TAG SEQADV 2DSM HIS A 70 UNP P45906 EXPRESSION TAG SEQADV 2DSM HIS A 71 UNP P45906 EXPRESSION TAG SEQADV 2DSM HIS A 72 UNP P45906 EXPRESSION TAG SEQADV 2DSM LEU B 65 UNP P45906 EXPRESSION TAG SEQADV 2DSM GLU B 66 UNP P45906 EXPRESSION TAG SEQADV 2DSM HIS B 67 UNP P45906 EXPRESSION TAG SEQADV 2DSM HIS B 68 UNP P45906 EXPRESSION TAG SEQADV 2DSM HIS B 69 UNP P45906 EXPRESSION TAG SEQADV 2DSM HIS B 70 UNP P45906 EXPRESSION TAG SEQADV 2DSM HIS B 71 UNP P45906 EXPRESSION TAG SEQADV 2DSM HIS B 72 UNP P45906 EXPRESSION TAG SEQRES 1 A 72 MET VAL GLU ASN PRO MET VAL ILE ASN ASN TRP HIS ASP SEQRES 2 A 72 LYS LEU THR GLU THR ASP VAL GLN ILE ASP PHE TYR GLY SEQRES 3 A 72 ASP GLU VAL THR PRO VAL ASP ASP TYR VAL ILE ASP GLY SEQRES 4 A 72 GLY GLU ILE ILE LEU ARG GLU ASN LEU GLU ARG TYR LEU SEQRES 5 A 72 ARG GLU GLN LEU GLY PHE GLU PHE LYS ASN ALA GLN LEU SEQRES 6 A 72 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 72 MET VAL GLU ASN PRO MET VAL ILE ASN ASN TRP HIS ASP SEQRES 2 B 72 LYS LEU THR GLU THR ASP VAL GLN ILE ASP PHE TYR GLY SEQRES 3 B 72 ASP GLU VAL THR PRO VAL ASP ASP TYR VAL ILE ASP GLY SEQRES 4 B 72 GLY GLU ILE ILE LEU ARG GLU ASN LEU GLU ARG TYR LEU SEQRES 5 B 72 ARG GLU GLN LEU GLY PHE GLU PHE LYS ASN ALA GLN LEU SEQRES 6 B 72 GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ARG A 45 GLN A 55 1 11 HELIX 2 2 ASN B 47 GLN B 55 1 9 SHEET 1 A 3 GLU A 41 LEU A 44 0 SHEET 2 A 3 TYR A 35 ASP A 38 -1 N VAL A 36 O ILE A 43 SHEET 3 A 3 PHE B 58 LYS B 61 -1 O LYS B 61 N TYR A 35 SHEET 1 B 3 GLU A 59 PHE A 60 0 SHEET 2 B 3 TYR B 35 ASP B 38 -1 O ILE B 37 N GLU A 59 SHEET 3 B 3 GLU B 41 LEU B 44 -1 O ILE B 43 N VAL B 36 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1