HEADER TRANSFERASE 11-JUL-06 2DT9 TITLE CRYSTAL STRUCTURE OF THE REGULATORY SUBUNIT OF ASPARTATE KINASE FROM TITLE 2 THERMUS FLAVUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: REGULATORY SUBUNIT, ASPARTOKINASE SUBUNIT ALPHA AND COMPND 5 ASPARTOKINASE SUBUNIT BETA; COMPND 6 EC: 2.7.2.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 STRAIN: AT62; SOURCE 5 GENE: ASKB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS PROTEIN-LIGAND COMPLEX, REGULATORY SUBUNIT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.YOSHIDA,T.TOMITA,S.FUSHINOBU,T.KUZUYAMA,M.NISHIYAMA REVDAT 4 13-MAR-24 2DT9 1 REMARK SEQADV REVDAT 3 23-JUN-09 2DT9 1 JRNL REMARK REVDAT 2 24-FEB-09 2DT9 1 VERSN REVDAT 1 17-JUL-07 2DT9 0 JRNL AUTH A.YOSHIDA,T.TOMITA,H.KONO,S.FUSHINOBU,T.KUZUYAMA,M.NISHIYAMA JRNL TITL CRYSTAL STRUCTURES OF THE REGULATORY SUBUNIT OF JRNL TITL 2 THR-SENSITIVE ASPARTATE KINASE FROM THERMUS THERMOPHILUS JRNL REF FEBS J. V. 276 3124 2009 JRNL REFN ISSN 1742-464X JRNL PMID 19490113 JRNL DOI 10.1111/J.1742-4658.2009.07030.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.KOBASHI,M.NISHIYAMA,M.TANOKURA REMARK 1 TITL KINETIC AND MUTATION ANALYSES OF ASPARTATE KINASE FROM REMARK 1 TITL 2 THERMUS FLAVUS REMARK 1 REF J.BIOSCI.BIOENG. V. 87 739 1999 REMARK 1 REFN ISSN 1389-1723 REMARK 1 PMID 16232547 REMARK 1 DOI 10.1016/S1389-1723(99)80146-7 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.NISHIYAMA,M.KUKIMOTO,T.BEPPU,S.HORINOUCHI REMARK 1 TITL AN OPERON ENCODING ASPARTOKINASE AND PURINE REMARK 1 TITL 2 PHOSPHORIBOSYLTRANSFERASE IN THERMUS FLAVUS REMARK 1 REF MICROBIOLOGY V. 141 1211 1995 REMARK 1 REFN ISSN 0026-2617 REMARK 1 PMID 7773416 REMARK 1 DOI 10.1099/13500872-141-5-1211 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4008247.900 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1352 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4193 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 217 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2228 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 153 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.970 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.860 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.310 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.210 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 32.81 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : THR2.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ACETATE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : THR2.TOP REMARK 3 TOPOLOGY FILE 3 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 4 : ACETATE.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000025818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-05; 27-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 95; 95 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY; PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A; AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1; 0.97920, 0.97944, 0.96300 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL; SI 111 CHANNEL REMARK 200 OPTICS : MIRROR; MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; ADSC QUANTUM REMARK 200 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27145 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 59.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 11.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE TRIHYDRATE, 1.4M REMARK 280 SODIUM CHLORIDE, 5MM THREONINE, PH 4.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 70.88650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.88650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.88650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.88650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.88650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 70.88650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 70.88650 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 70.88650 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 70.88650 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 70.88650 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 70.88650 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 70.88650 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 70.88650 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 70.88650 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 70.88650 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 70.88650 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 70.88650 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 70.88650 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 35.44325 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 106.32975 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 106.32975 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 35.44325 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 35.44325 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 35.44325 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 106.32975 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 106.32975 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 35.44325 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 106.32975 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 35.44325 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 106.32975 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 35.44325 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 106.32975 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 106.32975 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 106.32975 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 35.44325 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 106.32975 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 35.44325 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 35.44325 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 35.44325 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 106.32975 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 106.32975 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 35.44325 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 35.44325 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 106.32975 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 106.32975 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 106.32975 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 106.32975 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 35.44325 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 106.32975 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 35.44325 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 106.32975 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 35.44325 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 35.44325 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 35.44325 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 MET A 3 REMARK 465 ASP A 4 REMARK 465 LEU A 158 REMARK 465 ASP A 159 REMARK 465 LYS A 160 REMARK 465 ALA A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 HIS A 167 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 MET B 3 REMARK 465 ASP B 4 REMARK 465 LEU B 158 REMARK 465 ASP B 159 REMARK 465 LYS B 160 REMARK 465 ALA B 161 REMARK 465 HIS B 162 REMARK 465 HIS B 163 REMARK 465 HIS B 164 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 465 HIS B 167 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 ARG A 150 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 5 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 571 O HOH B 584 1.56 REMARK 500 O HOH A 571 O HOH B 585 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 559 O HOH B 509 21544 0.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 46 -65.21 -97.44 REMARK 500 ASP A 94 58.79 -97.39 REMARK 500 PRO A 109 -35.20 -33.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THR B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THR B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DTJ RELATED DB: PDB REMARK 900 THE SAME PROTEIN FROM CORYNEBACTERIUM GLUTAMICUM DBREF 2DT9 A 1 161 UNP P61489 AK_THETH 245 405 DBREF 2DT9 B 1 161 UNP P61489 AK_THETH 245 405 SEQADV 2DT9 HIS A 162 UNP P61489 EXPRESSION TAG SEQADV 2DT9 HIS A 163 UNP P61489 EXPRESSION TAG SEQADV 2DT9 HIS A 164 UNP P61489 EXPRESSION TAG SEQADV 2DT9 HIS A 165 UNP P61489 EXPRESSION TAG SEQADV 2DT9 HIS A 166 UNP P61489 EXPRESSION TAG SEQADV 2DT9 HIS A 167 UNP P61489 EXPRESSION TAG SEQADV 2DT9 HIS B 162 UNP P61489 EXPRESSION TAG SEQADV 2DT9 HIS B 163 UNP P61489 EXPRESSION TAG SEQADV 2DT9 HIS B 164 UNP P61489 EXPRESSION TAG SEQADV 2DT9 HIS B 165 UNP P61489 EXPRESSION TAG SEQADV 2DT9 HIS B 166 UNP P61489 EXPRESSION TAG SEQADV 2DT9 HIS B 167 UNP P61489 EXPRESSION TAG SEQRES 1 A 167 MET GLU MET ASP LYS ALA VAL THR GLY VAL ALA LEU ASP SEQRES 2 A 167 LEU ASP HIS ALA GLN ILE GLY LEU ILE GLY ILE PRO ASP SEQRES 3 A 167 GLN PRO GLY ILE ALA ALA LYS VAL PHE GLN ALA LEU ALA SEQRES 4 A 167 GLU ARG GLY ILE ALA VAL ASP MET ILE ILE GLN GLY VAL SEQRES 5 A 167 PRO GLY HIS ASP PRO SER ARG GLN GLN MET ALA PHE THR SEQRES 6 A 167 VAL LYS LYS ASP PHE ALA GLN GLU ALA LEU GLU ALA LEU SEQRES 7 A 167 GLU PRO VAL LEU ALA GLU ILE GLY GLY GLU ALA ILE LEU SEQRES 8 A 167 ARG PRO ASP ILE ALA LYS VAL SER ILE VAL GLY VAL GLY SEQRES 9 A 167 LEU ALA SER THR PRO GLU VAL PRO ALA LYS MET PHE GLN SEQRES 10 A 167 ALA VAL ALA SER THR GLY ALA ASN ILE GLU MET ILE ALA SEQRES 11 A 167 THR SER GLU VAL ARG ILE SER VAL ILE ILE PRO ALA GLU SEQRES 12 A 167 TYR ALA GLU ALA ALA LEU ARG ALA VAL HIS GLN ALA PHE SEQRES 13 A 167 GLU LEU ASP LYS ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 167 MET GLU MET ASP LYS ALA VAL THR GLY VAL ALA LEU ASP SEQRES 2 B 167 LEU ASP HIS ALA GLN ILE GLY LEU ILE GLY ILE PRO ASP SEQRES 3 B 167 GLN PRO GLY ILE ALA ALA LYS VAL PHE GLN ALA LEU ALA SEQRES 4 B 167 GLU ARG GLY ILE ALA VAL ASP MET ILE ILE GLN GLY VAL SEQRES 5 B 167 PRO GLY HIS ASP PRO SER ARG GLN GLN MET ALA PHE THR SEQRES 6 B 167 VAL LYS LYS ASP PHE ALA GLN GLU ALA LEU GLU ALA LEU SEQRES 7 B 167 GLU PRO VAL LEU ALA GLU ILE GLY GLY GLU ALA ILE LEU SEQRES 8 B 167 ARG PRO ASP ILE ALA LYS VAL SER ILE VAL GLY VAL GLY SEQRES 9 B 167 LEU ALA SER THR PRO GLU VAL PRO ALA LYS MET PHE GLN SEQRES 10 B 167 ALA VAL ALA SER THR GLY ALA ASN ILE GLU MET ILE ALA SEQRES 11 B 167 THR SER GLU VAL ARG ILE SER VAL ILE ILE PRO ALA GLU SEQRES 12 B 167 TYR ALA GLU ALA ALA LEU ARG ALA VAL HIS GLN ALA PHE SEQRES 13 B 167 GLU LEU ASP LYS ALA HIS HIS HIS HIS HIS HIS HET ACT A 502 4 HET ACT B 501 4 HET THR B 401 8 HET THR B 402 8 HETNAM ACT ACETATE ION HETNAM THR THREONINE FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 THR 2(C4 H9 N O3) FORMUL 7 HOH *153(H2 O) HELIX 1 1 GLY A 29 GLY A 42 1 14 HELIX 2 2 PHE A 70 GLY A 86 1 17 HELIX 3 3 GLY A 104 THR A 108 5 5 HELIX 4 4 PRO A 109 THR A 122 1 14 HELIX 5 5 TYR A 144 PHE A 156 1 13 HELIX 6 6 GLY B 29 ARG B 41 1 13 HELIX 7 7 PHE B 70 GLY B 86 1 17 HELIX 8 8 PRO B 109 THR B 122 1 14 HELIX 9 9 TYR B 144 PHE B 156 1 13 SHEET 1 A 4 VAL A 7 ASP A 13 0 SHEET 2 A 4 ILE A 95 GLY A 102 -1 O SER A 99 N ALA A 11 SHEET 3 A 4 ARG A 135 PRO A 141 -1 O ILE A 140 N ALA A 96 SHEET 4 A 4 MET A 128 THR A 131 -1 N ALA A 130 O SER A 137 SHEET 1 B 4 ILE A 48 ILE A 49 0 SHEET 2 B 4 ARG A 59 LYS A 67 -1 O ALA A 63 N ILE A 49 SHEET 3 B 4 HIS A 16 PRO A 25 -1 N LEU A 21 O MET A 62 SHEET 4 B 4 GLU A 88 ARG A 92 -1 O GLU A 88 N ILE A 22 SHEET 1 C 4 VAL B 7 ASP B 13 0 SHEET 2 C 4 ILE B 95 GLY B 102 -1 O VAL B 101 N GLY B 9 SHEET 3 C 4 ARG B 135 PRO B 141 -1 O VAL B 138 N VAL B 98 SHEET 4 C 4 MET B 128 THR B 131 -1 N ALA B 130 O SER B 137 SHEET 1 D 4 MET B 47 ILE B 49 0 SHEET 2 D 4 ARG B 59 LYS B 67 -1 O ALA B 63 N ILE B 49 SHEET 3 D 4 HIS B 16 PRO B 25 -1 N LEU B 21 O MET B 62 SHEET 4 D 4 GLU B 88 ARG B 92 -1 O ARG B 92 N GLN B 18 SITE 1 AC1 9 ALA A 130 THR A 131 SER A 132 SER A 137 SITE 2 AC1 9 ACT A 502 HOH A 535 THR B 131 SER B 132 SITE 3 AC1 9 HOH B 585 SITE 1 AC2 8 THR A 131 SER A 132 MET B 47 ALA B 130 SITE 2 AC2 8 THR B 131 SER B 132 SER B 137 ACT B 501 SITE 1 AC3 10 ASP A 26 GLN A 27 GLY A 29 ILE A 30 SITE 2 AC3 10 ALA A 31 GLN A 50 ASN B 125 ILE B 126 SITE 3 AC3 10 HOH B 503 HOH B 504 SITE 1 AC4 11 ASN A 125 ILE A 126 ASP B 26 GLN B 27 SITE 2 AC4 11 PRO B 28 GLY B 29 ILE B 30 ALA B 31 SITE 3 AC4 11 GLN B 50 HOH B 515 HOH B 525 CRYST1 141.773 141.773 141.773 90.00 90.00 90.00 P 43 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007054 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007054 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007054 0.00000