HEADER LIGASE/RNA 20-JUL-06 2DU5 TITLE CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS O-PHOSPHOSERYL-TRNA TITLE 2 SYNTHETASE E418N/E420N MUTANT COMPLEXED WITH TRNAOPAL AND O- TITLE 3 PHOSPHOSERINE ("OPAL COMPLEX") COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA; COMPND 3 CHAIN: D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: O-PHOSPHOSERYL-TRNA SYNTHETASE; COMPND 8 CHAIN: A, B; COMPND 9 EC: 6.1.1.-; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 5 ORGANISM_TAXID: 2234; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS ALPHA4 TETRAMER, LIGASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.FUKUNAGA REVDAT 6 25-OCT-23 2DU5 1 REMARK REVDAT 5 10-NOV-21 2DU5 1 REMARK SEQADV REVDAT 4 09-JUN-09 2DU5 1 REVDAT REVDAT 3 24-FEB-09 2DU5 1 VERSN REVDAT 2 06-JAN-09 2DU5 1 JRNL REVDAT 1 13-MAR-07 2DU5 0 JRNL AUTH R.FUKUNAGA,S.YOKOYAMA JRNL TITL STRUCTURAL INSIGHTS INTO THE FIRST STEP OF RNA-DEPENDENT JRNL TITL 2 CYSTEINE BIOSYNTHESIS IN ARCHAEA. JRNL REF NAT.STRUCT.MOL.BIOL. V. 14 272 2007 JRNL REFN ISSN 1545-9993 JRNL PMID 17351629 JRNL DOI 10.1038/NSMB1219 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4343279.390 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 32270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1603 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5039 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 252 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8080 REMARK 3 NUCLEIC ACID ATOMS : 1517 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 113.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.74000 REMARK 3 B22 (A**2) : -4.74000 REMARK 3 B33 (A**2) : 9.48000 REMARK 3 B12 (A**2) : 12.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.50 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.65 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.940 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 20.500; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 23.980; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 27.400; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 29.730; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.29 REMARK 3 BSOL : 101.5 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 5 : SEP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : DNA-RNA_REP.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000025846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32270 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2DU3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 6000, 1.2M NACL, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.82767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.65533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 101.65533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.82767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER OF O-PHOSPHOSERYL- REMARK 300 TRNA SYNTHETASE WITH TWO BOUND TRNAOPAL MOLECULES GENERATED FROM REMARK 300 THE DIMER O-PHOSPHOSERYL-TRNA SYNTHETASE WITH ONE BOUND TRNAOPAL REMARK 300 MOLECULE IN THE ASYMMETRIC UNIT BY THE OPERATIONS: Y, X, -Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL B 105 REMARK 465 GLY B 106 REMARK 465 ILE B 107 REMARK 465 SER B 108 REMARK 465 ALA B 109 REMARK 465 GLU B 110 REMARK 465 LYS B 111 REMARK 465 ILE B 112 REMARK 465 ARG B 113 REMARK 465 GLN B 114 REMARK 465 ILE B 115 REMARK 465 GLU B 116 REMARK 465 ALA B 117 REMARK 465 ILE B 118 REMARK 465 THR B 119 REMARK 465 LYS B 120 REMARK 465 ARG B 121 REMARK 465 GLU B 122 REMARK 465 VAL B 123 REMARK 465 ASP B 124 REMARK 465 SER B 125 REMARK 465 LYS B 126 REMARK 465 PRO B 127 REMARK 465 LEU B 128 REMARK 465 GLN B 129 REMARK 465 GLU B 130 REMARK 465 ILE B 131 REMARK 465 PHE B 132 REMARK 465 HIS B 133 REMARK 465 ARG B 134 REMARK 465 TYR B 135 REMARK 465 LYS B 136 REMARK 465 LYS B 137 REMARK 465 GLY B 138 REMARK 465 GLU B 139 REMARK 465 ILE B 140 REMARK 465 ASP B 141 REMARK 465 GLY B 142 REMARK 465 ASP B 143 REMARK 465 ASP B 144 REMARK 465 LEU B 145 REMARK 465 SER B 146 REMARK 465 TYR B 147 REMARK 465 LEU B 148 REMARK 465 ILE B 149 REMARK 465 ALA B 150 REMARK 465 GLU B 151 REMARK 465 VAL B 152 REMARK 465 LEU B 153 REMARK 465 ASP B 154 REMARK 465 VAL B 155 REMARK 465 ASP B 156 REMARK 465 ASP B 157 REMARK 465 ILE B 158 REMARK 465 THR B 159 REMARK 465 ALA B 160 REMARK 465 VAL B 161 REMARK 465 LYS B 162 REMARK 465 ILE B 163 REMARK 465 LEU B 164 REMARK 465 ASP B 165 REMARK 465 GLU B 166 REMARK 465 VAL B 167 REMARK 465 PHE B 168 REMARK 465 PRO B 169 REMARK 465 GLU B 170 REMARK 465 PHE B 171 REMARK 465 LYS B 172 REMARK 465 GLU B 173 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G D 901 P G D 901 OP3 -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 320 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 3 -161.56 -125.16 REMARK 500 LYS A 14 -77.57 -106.12 REMARK 500 PHE A 16 -76.61 -53.91 REMARK 500 GLU A 17 -34.90 -34.07 REMARK 500 LYS A 24 -20.21 -38.75 REMARK 500 ARG A 38 -13.03 -49.04 REMARK 500 LEU A 91 -13.04 -40.23 REMARK 500 PRO A 103 90.76 -67.13 REMARK 500 ASN A 104 102.01 -49.01 REMARK 500 VAL A 105 40.04 -90.50 REMARK 500 ILE A 107 -91.47 68.72 REMARK 500 GLU A 116 -163.56 -115.17 REMARK 500 ILE A 118 -81.94 -39.06 REMARK 500 LYS A 120 -51.14 -124.19 REMARK 500 ARG A 121 105.77 -51.39 REMARK 500 GLU A 122 103.62 -33.53 REMARK 500 VAL A 123 -32.91 -139.16 REMARK 500 ASP A 124 -124.59 42.90 REMARK 500 SER A 125 119.51 60.24 REMARK 500 LYS A 126 137.43 -25.88 REMARK 500 PRO A 127 105.18 -45.90 REMARK 500 LEU A 128 37.08 -77.24 REMARK 500 ILE A 140 -147.26 -138.92 REMARK 500 LEU A 145 30.84 -98.72 REMARK 500 TYR A 147 50.16 -102.06 REMARK 500 LEU A 148 -68.68 -168.36 REMARK 500 GLU A 151 -75.64 -167.05 REMARK 500 LEU A 153 -167.53 58.98 REMARK 500 ASP A 154 112.89 67.54 REMARK 500 ASP A 156 -107.77 17.37 REMARK 500 THR A 159 -4.51 -144.86 REMARK 500 SER A 178 179.10 -58.44 REMARK 500 ARG A 184 134.88 -35.26 REMARK 500 ILE A 198 -11.69 -140.93 REMARK 500 ALA A 199 -17.16 -45.20 REMARK 500 ARG A 216 138.85 -170.44 REMARK 500 ARG A 225 -177.72 -172.04 REMARK 500 PHE A 259 138.35 -36.93 REMARK 500 GLN A 279 96.44 -61.04 REMARK 500 LYS A 288 -20.56 -39.48 REMARK 500 THR A 294 172.60 -59.70 REMARK 500 TYR A 348 54.77 -111.48 REMARK 500 HIS A 352 32.77 -87.63 REMARK 500 GLU A 354 39.29 -88.70 REMARK 500 LYS A 369 -75.17 -49.29 REMARK 500 SER A 393 50.60 -114.00 REMARK 500 PRO A 397 -162.01 -79.61 REMARK 500 CYS A 398 -169.86 155.85 REMARK 500 ALA A 402 -66.19 -109.50 REMARK 500 ASN A 420 177.81 -59.57 REMARK 500 REMARK 500 THIS ENTRY HAS 101 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SEP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SEP A 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DU3 RELATED DB: PDB REMARK 900 RELATED ID: 2DU4 RELATED DB: PDB REMARK 900 RELATED ID: 2DU6 RELATED DB: PDB REMARK 900 RELATED ID: 2DU7 RELATED DB: PDB DBREF 2DU5 A 1 534 UNP O30126 O30126_ARCFU 1 534 DBREF 2DU5 B 1 534 UNP O30126 O30126_ARCFU 1 534 DBREF 2DU5 D 901 971 PDB 2DU5 2DU5 901 971 SEQADV 2DU5 ASN A 418 UNP O30126 GLU 418 ENGINEERED MUTATION SEQADV 2DU5 ASN A 420 UNP O30126 GLU 420 ENGINEERED MUTATION SEQADV 2DU5 ASN B 418 UNP O30126 GLU 418 ENGINEERED MUTATION SEQADV 2DU5 ASN B 420 UNP O30126 GLU 420 ENGINEERED MUTATION SEQRES 1 D 71 G C C A G G G U G G C A G SEQRES 2 D 71 A G G G G C U U U G C G G SEQRES 3 D 71 C G G A C U U C A G A U C SEQRES 4 D 71 C G C U U U A C C C C G G SEQRES 5 D 71 U U C G A A U C C G G G C SEQRES 6 D 71 C C U G G C SEQRES 1 A 534 MET LYS PHE ASP PRO GLN LYS TYR ARG GLU LEU ALA GLU SEQRES 2 A 534 LYS ASP PHE GLU ALA ALA TRP LYS ALA GLY LYS GLU ILE SEQRES 3 A 534 LEU ALA GLU ARG SER PRO ASN GLU LEU TYR PRO ARG VAL SEQRES 4 A 534 GLY PHE SER PHE GLY LYS GLU HIS PRO LEU PHE ALA THR SEQRES 5 A 534 ILE GLN ARG LEU ARG GLU ALA TYR LEU SER ILE GLY PHE SEQRES 6 A 534 SER GLU VAL VAL ASN PRO LEU ILE VAL GLU ASP VAL HIS SEQRES 7 A 534 VAL LYS LYS GLN PHE GLY ARG GLU ALA LEU ALA VAL LEU SEQRES 8 A 534 ASP ARG CYS PHE TYR LEU ALA THR LEU PRO LYS PRO ASN SEQRES 9 A 534 VAL GLY ILE SER ALA GLU LYS ILE ARG GLN ILE GLU ALA SEQRES 10 A 534 ILE THR LYS ARG GLU VAL ASP SER LYS PRO LEU GLN GLU SEQRES 11 A 534 ILE PHE HIS ARG TYR LYS LYS GLY GLU ILE ASP GLY ASP SEQRES 12 A 534 ASP LEU SER TYR LEU ILE ALA GLU VAL LEU ASP VAL ASP SEQRES 13 A 534 ASP ILE THR ALA VAL LYS ILE LEU ASP GLU VAL PHE PRO SEQRES 14 A 534 GLU PHE LYS GLU LEU LYS PRO ILE SER SER THR LEU THR SEQRES 15 A 534 LEU ARG SER HIS MET THR THR GLY TRP PHE ILE THR LEU SEQRES 16 A 534 SER HIS ILE ALA ASP LYS LEU PRO LEU PRO ILE LYS LEU SEQRES 17 A 534 PHE SER ILE ASP ARG CYS PHE ARG ARG GLU GLN GLY GLU SEQRES 18 A 534 ASP ALA THR ARG LEU TYR THR TYR PHE SER ALA SER CYS SEQRES 19 A 534 VAL LEU VAL ASP GLU GLU LEU SER VAL ASP ASP GLY LYS SEQRES 20 A 534 ALA VAL ALA GLU ALA LEU LEU ARG GLN PHE GLY PHE GLU SEQRES 21 A 534 ASN PHE ARG PHE ARG LYS ASP GLU LYS ARG SER LYS TYR SEQRES 22 A 534 TYR ILE PRO ASP THR GLN THR GLU VAL PHE ALA PHE HIS SEQRES 23 A 534 PRO LYS LEU VAL GLY SER SER THR LYS TYR SER ASP GLY SEQRES 24 A 534 TRP ILE GLU ILE ALA THR PHE GLY ILE TYR SER PRO THR SEQRES 25 A 534 ALA LEU ALA GLU TYR ASP ILE PRO TYR PRO VAL MET ASN SEQRES 26 A 534 LEU GLY LEU GLY VAL GLU ARG LEU ALA MET ILE LEU TYR SEQRES 27 A 534 GLY TYR ASP ASP VAL ARG LYS MET VAL TYR PRO GLN ILE SEQRES 28 A 534 HIS GLY GLU ILE LYS LEU SER ASP LEU ASP ILE ALA ARG SEQRES 29 A 534 GLU ILE LYS VAL LYS GLU VAL PRO GLN THR ALA VAL GLY SEQRES 30 A 534 LEU LYS ILE ALA GLN SER ILE VAL GLU THR ALA GLU LYS SEQRES 31 A 534 HIS ALA SER GLU PRO SER PRO CYS SER PHE LEU ALA PHE SEQRES 32 A 534 GLU GLY GLU MET MET GLY ARG ASN VAL ARG VAL TYR VAL SEQRES 33 A 534 VAL ASN GLU ASN GLU ASN THR LYS LEU CYS GLY PRO ALA SEQRES 34 A 534 TYR ALA ASN GLU VAL VAL VAL TYR LYS GLY ASP ILE TYR SEQRES 35 A 534 GLY ILE PRO LYS THR LYS LYS TRP ARG SER PHE PHE GLU SEQRES 36 A 534 GLU GLY VAL PRO THR GLY ILE ARG TYR ILE ASP GLY PHE SEQRES 37 A 534 ALA TYR TYR ALA ALA ARG LYS VAL GLU GLU ALA ALA MET SEQRES 38 A 534 ARG GLU GLN GLU GLU VAL LYS VAL LYS ALA ARG ILE VAL SEQRES 39 A 534 GLU ASN LEU SER ASP ILE ASN LEU TYR ILE HIS GLU ASN SEQRES 40 A 534 VAL ARG ARG TYR ILE LEU TRP LYS LYS GLY LYS ILE ASP SEQRES 41 A 534 VAL ARG GLY PRO LEU PHE VAL THR VAL LYS ALA GLU ILE SEQRES 42 A 534 GLU SEQRES 1 B 534 MET LYS PHE ASP PRO GLN LYS TYR ARG GLU LEU ALA GLU SEQRES 2 B 534 LYS ASP PHE GLU ALA ALA TRP LYS ALA GLY LYS GLU ILE SEQRES 3 B 534 LEU ALA GLU ARG SER PRO ASN GLU LEU TYR PRO ARG VAL SEQRES 4 B 534 GLY PHE SER PHE GLY LYS GLU HIS PRO LEU PHE ALA THR SEQRES 5 B 534 ILE GLN ARG LEU ARG GLU ALA TYR LEU SER ILE GLY PHE SEQRES 6 B 534 SER GLU VAL VAL ASN PRO LEU ILE VAL GLU ASP VAL HIS SEQRES 7 B 534 VAL LYS LYS GLN PHE GLY ARG GLU ALA LEU ALA VAL LEU SEQRES 8 B 534 ASP ARG CYS PHE TYR LEU ALA THR LEU PRO LYS PRO ASN SEQRES 9 B 534 VAL GLY ILE SER ALA GLU LYS ILE ARG GLN ILE GLU ALA SEQRES 10 B 534 ILE THR LYS ARG GLU VAL ASP SER LYS PRO LEU GLN GLU SEQRES 11 B 534 ILE PHE HIS ARG TYR LYS LYS GLY GLU ILE ASP GLY ASP SEQRES 12 B 534 ASP LEU SER TYR LEU ILE ALA GLU VAL LEU ASP VAL ASP SEQRES 13 B 534 ASP ILE THR ALA VAL LYS ILE LEU ASP GLU VAL PHE PRO SEQRES 14 B 534 GLU PHE LYS GLU LEU LYS PRO ILE SER SER THR LEU THR SEQRES 15 B 534 LEU ARG SER HIS MET THR THR GLY TRP PHE ILE THR LEU SEQRES 16 B 534 SER HIS ILE ALA ASP LYS LEU PRO LEU PRO ILE LYS LEU SEQRES 17 B 534 PHE SER ILE ASP ARG CYS PHE ARG ARG GLU GLN GLY GLU SEQRES 18 B 534 ASP ALA THR ARG LEU TYR THR TYR PHE SER ALA SER CYS SEQRES 19 B 534 VAL LEU VAL ASP GLU GLU LEU SER VAL ASP ASP GLY LYS SEQRES 20 B 534 ALA VAL ALA GLU ALA LEU LEU ARG GLN PHE GLY PHE GLU SEQRES 21 B 534 ASN PHE ARG PHE ARG LYS ASP GLU LYS ARG SER LYS TYR SEQRES 22 B 534 TYR ILE PRO ASP THR GLN THR GLU VAL PHE ALA PHE HIS SEQRES 23 B 534 PRO LYS LEU VAL GLY SER SER THR LYS TYR SER ASP GLY SEQRES 24 B 534 TRP ILE GLU ILE ALA THR PHE GLY ILE TYR SER PRO THR SEQRES 25 B 534 ALA LEU ALA GLU TYR ASP ILE PRO TYR PRO VAL MET ASN SEQRES 26 B 534 LEU GLY LEU GLY VAL GLU ARG LEU ALA MET ILE LEU TYR SEQRES 27 B 534 GLY TYR ASP ASP VAL ARG LYS MET VAL TYR PRO GLN ILE SEQRES 28 B 534 HIS GLY GLU ILE LYS LEU SER ASP LEU ASP ILE ALA ARG SEQRES 29 B 534 GLU ILE LYS VAL LYS GLU VAL PRO GLN THR ALA VAL GLY SEQRES 30 B 534 LEU LYS ILE ALA GLN SER ILE VAL GLU THR ALA GLU LYS SEQRES 31 B 534 HIS ALA SER GLU PRO SER PRO CYS SER PHE LEU ALA PHE SEQRES 32 B 534 GLU GLY GLU MET MET GLY ARG ASN VAL ARG VAL TYR VAL SEQRES 33 B 534 VAL ASN GLU ASN GLU ASN THR LYS LEU CYS GLY PRO ALA SEQRES 34 B 534 TYR ALA ASN GLU VAL VAL VAL TYR LYS GLY ASP ILE TYR SEQRES 35 B 534 GLY ILE PRO LYS THR LYS LYS TRP ARG SER PHE PHE GLU SEQRES 36 B 534 GLU GLY VAL PRO THR GLY ILE ARG TYR ILE ASP GLY PHE SEQRES 37 B 534 ALA TYR TYR ALA ALA ARG LYS VAL GLU GLU ALA ALA MET SEQRES 38 B 534 ARG GLU GLN GLU GLU VAL LYS VAL LYS ALA ARG ILE VAL SEQRES 39 B 534 GLU ASN LEU SER ASP ILE ASN LEU TYR ILE HIS GLU ASN SEQRES 40 B 534 VAL ARG ARG TYR ILE LEU TRP LYS LYS GLY LYS ILE ASP SEQRES 41 B 534 VAL ARG GLY PRO LEU PHE VAL THR VAL LYS ALA GLU ILE SEQRES 42 B 534 GLU HET SEP A1001 11 HET SEP A1002 11 HETNAM SEP PHOSPHOSERINE HETSYN SEP PHOSPHONOSERINE FORMUL 4 SEP 2(C3 H8 N O6 P) HELIX 1 1 ASP A 4 GLU A 13 1 10 HELIX 2 2 ASP A 15 ALA A 22 1 8 HELIX 3 3 GLY A 23 LEU A 27 5 5 HELIX 4 4 SER A 31 LEU A 35 5 5 HELIX 5 5 HIS A 47 ILE A 63 1 17 HELIX 6 6 ASP A 76 PHE A 83 1 8 HELIX 7 7 GLU A 86 ASP A 92 1 7 HELIX 8 8 GLY A 106 GLU A 110 5 5 HELIX 9 9 HIS A 133 GLY A 138 1 6 HELIX 10 10 VAL A 161 GLU A 166 1 6 HELIX 11 11 PHE A 168 LEU A 174 5 7 HELIX 12 12 HIS A 186 HIS A 197 1 12 HELIX 13 13 SER A 242 ARG A 255 1 14 HELIX 14 14 PRO A 287 VAL A 290 5 4 HELIX 15 15 SER A 310 GLU A 316 1 7 HELIX 16 16 VAL A 330 GLY A 339 1 10 HELIX 17 17 ASP A 342 TYR A 348 1 7 HELIX 18 18 SER A 358 GLU A 365 1 8 HELIX 19 19 THR A 374 HIS A 391 1 18 HELIX 20 20 TRP A 450 PHE A 454 5 5 HELIX 21 21 TYR A 464 GLU A 483 1 20 HELIX 22 22 LEU A 497 ILE A 500 5 4 HELIX 23 23 HIS A 505 LYS A 515 1 11 HELIX 24 24 ASP B 4 ASP B 15 1 12 HELIX 25 25 ASP B 15 GLY B 23 1 9 HELIX 26 26 LYS B 24 ILE B 26 5 3 HELIX 27 27 SER B 31 LEU B 35 5 5 HELIX 28 28 HIS B 47 SER B 62 1 16 HELIX 29 29 ASP B 76 PHE B 83 1 8 HELIX 30 30 GLU B 86 CYS B 94 1 9 HELIX 31 31 MET B 187 HIS B 197 1 11 HELIX 32 32 SER B 242 GLN B 256 1 15 HELIX 33 33 THR B 294 ASP B 298 5 5 HELIX 34 34 SER B 310 TYR B 317 1 8 HELIX 35 35 VAL B 330 GLY B 339 1 10 HELIX 36 36 ASP B 342 TYR B 348 1 7 HELIX 37 37 SER B 358 GLU B 365 1 8 HELIX 38 38 THR B 374 HIS B 391 1 18 HELIX 39 39 TRP B 450 GLU B 455 1 6 HELIX 40 40 TYR B 464 MET B 481 1 18 HELIX 41 41 LEU B 497 ILE B 500 5 4 HELIX 42 42 HIS B 505 LYS B 515 1 11 SHEET 1 A 7 SER A 66 GLU A 67 0 SHEET 2 A 7 ILE A 206 PHE A 215 1 O PHE A 209 N SER A 66 SHEET 3 A 7 THR A 228 VAL A 237 -1 O VAL A 237 N ILE A 206 SHEET 4 A 7 VAL A 323 GLY A 329 -1 O MET A 324 N LEU A 236 SHEET 5 A 7 TRP A 300 ILE A 308 -1 N THR A 305 O GLY A 327 SHEET 6 A 7 THR A 280 PHE A 285 -1 N THR A 280 O PHE A 306 SHEET 7 A 7 ASN A 261 LYS A 266 -1 N ASN A 261 O PHE A 285 SHEET 1 B 4 ILE A 73 GLU A 75 0 SHEET 2 B 4 LEU A 181 LEU A 183 -1 O THR A 182 N VAL A 74 SHEET 3 B 4 PHE A 95 ALA A 98 -1 N LEU A 97 O LEU A 181 SHEET 4 B 4 TYR B 96 ALA B 98 -1 O ALA B 98 N TYR A 96 SHEET 1 C 2 ILE A 366 VAL A 368 0 SHEET 2 C 2 LEU A 502 ILE A 504 -1 O TYR A 503 N LYS A 367 SHEET 1 D 4 SER A 399 GLU A 406 0 SHEET 2 D 4 ASN A 411 VAL A 417 -1 O VAL A 412 N GLY A 405 SHEET 3 D 4 GLY A 523 ILE A 533 -1 O LYS A 530 N TYR A 415 SHEET 4 D 4 GLU A 486 VAL A 494 -1 N ARG A 492 O PHE A 526 SHEET 1 E 4 VAL A 458 ARG A 463 0 SHEET 2 E 4 GLU A 433 TYR A 437 -1 N VAL A 434 O THR A 460 SHEET 3 E 4 ASP A 440 ILE A 444 -1 O ILE A 444 N GLU A 433 SHEET 4 E 4 ILE A 519 ASP A 520 1 O ASP A 520 N GLY A 443 SHEET 1 F 7 SER B 66 GLU B 67 0 SHEET 2 F 7 ILE B 206 PHE B 215 1 O LYS B 207 N SER B 66 SHEET 3 F 7 THR B 228 VAL B 237 -1 O SER B 233 N SER B 210 SHEET 4 F 7 MET B 324 GLY B 329 -1 O MET B 324 N LEU B 236 SHEET 5 F 7 TRP B 300 ILE B 308 -1 N GLY B 307 O ASN B 325 SHEET 6 F 7 THR B 280 PHE B 285 -1 N VAL B 282 O ALA B 304 SHEET 7 F 7 ASN B 261 LYS B 266 -1 N ARG B 263 O PHE B 283 SHEET 1 G 2 ILE B 73 GLU B 75 0 SHEET 2 G 2 LEU B 181 LEU B 183 -1 O THR B 182 N VAL B 74 SHEET 1 H 2 LYS B 367 VAL B 368 0 SHEET 2 H 2 LEU B 502 TYR B 503 -1 O TYR B 503 N LYS B 367 SHEET 1 I 4 SER B 399 MET B 407 0 SHEET 2 I 4 ARG B 410 VAL B 417 -1 O VAL B 414 N PHE B 403 SHEET 3 I 4 GLY B 523 ILE B 533 -1 O LYS B 530 N TYR B 415 SHEET 4 I 4 VAL B 487 VAL B 494 -1 N VAL B 489 O VAL B 529 SHEET 1 J 4 VAL B 458 ARG B 463 0 SHEET 2 J 4 GLU B 433 TYR B 437 -1 N VAL B 434 O THR B 460 SHEET 3 J 4 ASP B 440 ILE B 444 -1 O ASP B 440 N TYR B 437 SHEET 4 J 4 ILE B 519 ASP B 520 1 O ASP B 520 N GLY B 443 CISPEP 1 TYR A 36 PRO A 37 0 -0.08 CISPEP 2 LEU A 204 PRO A 205 0 0.15 CISPEP 3 SER A 396 PRO A 397 0 -0.06 CISPEP 4 TYR B 36 PRO B 37 0 -0.16 CISPEP 5 LEU B 204 PRO B 205 0 -0.20 CISPEP 6 SER B 396 PRO B 397 0 -0.01 SITE 1 AC1 9 HIS A 186 MET A 187 THR A 188 SER A 231 SITE 2 AC1 9 SER A 233 TYR A 273 TYR A 274 ASN A 325 SITE 3 AC1 9 GLY A 327 SITE 1 AC2 10 HIS B 186 MET B 187 THR B 188 SER B 231 SITE 2 AC2 10 SER B 233 TYR B 273 TYR B 274 THR B 305 SITE 3 AC2 10 ASN B 325 GLY B 327 CRYST1 148.040 148.040 152.483 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006755 0.003900 0.000000 0.00000 SCALE2 0.000000 0.007800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006558 0.00000