data_2DVK # _entry.id 2DVK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2DVK RCSB RCSB025895 WWPDB D_1000025895 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ape001000816.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DVK _pdbx_database_status.recvd_initial_deposition_date 2006-07-31 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lokanath, N.K.' 1 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 2 # _citation.id primary _citation.title 'Crystal Structure of Hypothetical protein from Aeropyrum pernix' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lokanath, N.K.' 1 primary 'Kunishima, N.' 2 # _cell.entry_id 2DVK _cell.length_a 55.870 _cell.length_b 70.232 _cell.length_c 91.579 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2DVK _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'UPF0130 protein APE0816' 21023.297 1 ? ? ? ? 2 water nat water 18.015 200 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSIEEVLLEERLIGYLDPGAEKVLARINRPSKIVSTSSCTGRITLIEGEAHWLRNGARVAYKTHHPISRSEVERVLRRG FTNLWLKVTGPILHLRVEGWQCAKSLLEAARRNGFKHSGVISIAEDSRLVIEIMSSQSMSVPLVMEGARIVGDDALDMLI EKANTILVESRIGLDTFSREVEELVECF ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSIEEVLLEERLIGYLDPGAEKVLARINRPSKIVSTSSCTGRITLIEGEAHWLRNGARVAYKTHHPISRSEVERVLRRG FTNLWLKVTGPILHLRVEGWQCAKSLLEAARRNGFKHSGVISIAEDSRLVIEIMSSQSMSVPLVMEGARIVGDDALDMLI EKANTILVESRIGLDTFSREVEELVECF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ape001000816.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 ILE n 1 5 GLU n 1 6 GLU n 1 7 VAL n 1 8 LEU n 1 9 LEU n 1 10 GLU n 1 11 GLU n 1 12 ARG n 1 13 LEU n 1 14 ILE n 1 15 GLY n 1 16 TYR n 1 17 LEU n 1 18 ASP n 1 19 PRO n 1 20 GLY n 1 21 ALA n 1 22 GLU n 1 23 LYS n 1 24 VAL n 1 25 LEU n 1 26 ALA n 1 27 ARG n 1 28 ILE n 1 29 ASN n 1 30 ARG n 1 31 PRO n 1 32 SER n 1 33 LYS n 1 34 ILE n 1 35 VAL n 1 36 SER n 1 37 THR n 1 38 SER n 1 39 SER n 1 40 CYS n 1 41 THR n 1 42 GLY n 1 43 ARG n 1 44 ILE n 1 45 THR n 1 46 LEU n 1 47 ILE n 1 48 GLU n 1 49 GLY n 1 50 GLU n 1 51 ALA n 1 52 HIS n 1 53 TRP n 1 54 LEU n 1 55 ARG n 1 56 ASN n 1 57 GLY n 1 58 ALA n 1 59 ARG n 1 60 VAL n 1 61 ALA n 1 62 TYR n 1 63 LYS n 1 64 THR n 1 65 HIS n 1 66 HIS n 1 67 PRO n 1 68 ILE n 1 69 SER n 1 70 ARG n 1 71 SER n 1 72 GLU n 1 73 VAL n 1 74 GLU n 1 75 ARG n 1 76 VAL n 1 77 LEU n 1 78 ARG n 1 79 ARG n 1 80 GLY n 1 81 PHE n 1 82 THR n 1 83 ASN n 1 84 LEU n 1 85 TRP n 1 86 LEU n 1 87 LYS n 1 88 VAL n 1 89 THR n 1 90 GLY n 1 91 PRO n 1 92 ILE n 1 93 LEU n 1 94 HIS n 1 95 LEU n 1 96 ARG n 1 97 VAL n 1 98 GLU n 1 99 GLY n 1 100 TRP n 1 101 GLN n 1 102 CYS n 1 103 ALA n 1 104 LYS n 1 105 SER n 1 106 LEU n 1 107 LEU n 1 108 GLU n 1 109 ALA n 1 110 ALA n 1 111 ARG n 1 112 ARG n 1 113 ASN n 1 114 GLY n 1 115 PHE n 1 116 LYS n 1 117 HIS n 1 118 SER n 1 119 GLY n 1 120 VAL n 1 121 ILE n 1 122 SER n 1 123 ILE n 1 124 ALA n 1 125 GLU n 1 126 ASP n 1 127 SER n 1 128 ARG n 1 129 LEU n 1 130 VAL n 1 131 ILE n 1 132 GLU n 1 133 ILE n 1 134 MET n 1 135 SER n 1 136 SER n 1 137 GLN n 1 138 SER n 1 139 MET n 1 140 SER n 1 141 VAL n 1 142 PRO n 1 143 LEU n 1 144 VAL n 1 145 MET n 1 146 GLU n 1 147 GLY n 1 148 ALA n 1 149 ARG n 1 150 ILE n 1 151 VAL n 1 152 GLY n 1 153 ASP n 1 154 ASP n 1 155 ALA n 1 156 LEU n 1 157 ASP n 1 158 MET n 1 159 LEU n 1 160 ILE n 1 161 GLU n 1 162 LYS n 1 163 ALA n 1 164 ASN n 1 165 THR n 1 166 ILE n 1 167 LEU n 1 168 VAL n 1 169 GLU n 1 170 SER n 1 171 ARG n 1 172 ILE n 1 173 GLY n 1 174 LEU n 1 175 ASP n 1 176 THR n 1 177 PHE n 1 178 SER n 1 179 ARG n 1 180 GLU n 1 181 VAL n 1 182 GLU n 1 183 GLU n 1 184 LEU n 1 185 VAL n 1 186 GLU n 1 187 CYS n 1 188 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Aeropyrum _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Aeropyrum pernix' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 56636 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain '21-CodonPlus (DE3)-RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y816_AERPE _struct_ref.pdbx_db_accession Q9YDV3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGSIEEVLLEERLIGYLDPGAEKVLARINRPSKIVSTSSCTGRITLIEGEAHWLRNGARVAYKTHHPISRSEVERVLRRG FTNLWLKVTGPILHLRVEGWQCAKSLLEAARRNGFKHSGVISIAEDSRLVIEIMSSQSMSVPLVMEGARIVGDDALDMLI EKANTILVESRIGLDTFSREVEELVECF ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DVK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 188 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9YDV3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 188 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 188 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2DVK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_percent_sol 42.42 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method MICROBATCH _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'HEPES, PEG, pH 7.5, microbatch, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100.0 ? 1 2 ? ? 1 1,2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 'IMAGE PLATE' RIGAKU 2006-07-11 'RH coated bend cylindrical mirror' 2 'IMAGE PLATE' RIGAKU 2006-07-11 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M GRAPHITE 'SINGLE WAVELENGTH' x-ray 2 1 M GRAPHITE MAD x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0 1.0 2 0.919573 1.0 3 0.919884 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'SPRING-8 BEAMLINE BL26B1' SPring-8 BL26B1 ? 1.0 2 SYNCHROTRON 'SPRING-8 BEAMLINE BL26B1' SPring-8 BL26B1 ? '0.919573, 0.919884, 1.0' # _reflns.entry_id 2DVK _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 40.0 _reflns.d_resolution_high 1.80 _reflns.number_obs 16254 _reflns.number_all 16342 _reflns.percent_possible_obs 97.0 _reflns.pdbx_Rmerge_I_obs 0.066 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.2 _reflns.B_iso_Wilson_estimate 13.8 _reflns.pdbx_redundancy 6.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 97.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.entry_id 2DVK _refine.ls_number_reflns_obs 16254 _refine.ls_number_reflns_all 16342 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1603995.15 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.46 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 95.6 _refine.ls_R_factor_obs 0.234 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.234 _refine.ls_R_factor_R_free 0.249 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 790 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 23.4 _refine.aniso_B[1][1] -3.69 _refine.aniso_B[2][2] 1.50 _refine.aniso_B[3][3] 2.20 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.352144 _refine.solvent_model_param_bsol 52.5388 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2DVK _refine_analyze.Luzzati_coordinate_error_obs 0.25 _refine_analyze.Luzzati_sigma_a_obs 0.21 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.28 _refine_analyze.Luzzati_sigma_a_free 0.20 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1296 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 200 _refine_hist.number_atoms_total 1496 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 39.46 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.6 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.83 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.91 _refine_ls_shell.number_reflns_R_work 2432 _refine_ls_shell.R_factor_R_work 0.331 _refine_ls_shell.percent_reflns_obs 92.2 _refine_ls_shell.R_factor_R_free 0.36 _refine_ls_shell.R_factor_R_free_error 0.033 _refine_ls_shell.percent_reflns_R_free 4.8 _refine_ls_shell.number_reflns_R_free 123 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 2DVK _struct.title 'Crystal Structure of Hypothetical protein from Aeropyrum pernix' _struct.pdbx_descriptor 'UPF0130 protein APE0816' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DVK _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;Hypothetical protein, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 18 ? GLY A 20 ? ASP A 18 GLY A 20 5 ? 3 HELX_P HELX_P2 2 ALA A 21 ? ARG A 30 ? ALA A 21 ARG A 30 1 ? 10 HELX_P HELX_P3 3 SER A 69 ? ARG A 78 ? SER A 69 ARG A 78 1 ? 10 HELX_P HELX_P4 4 GLY A 99 ? ASN A 113 ? GLY A 99 ASN A 113 1 ? 15 HELX_P HELX_P5 5 GLY A 152 ? LEU A 184 ? GLY A 152 LEU A 184 1 ? 33 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 102 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 187 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 102 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 187 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.033 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 34 ? CYS A 40 ? ILE A 34 CYS A 40 A 2 ILE A 92 ? VAL A 97 ? ILE A 92 VAL A 97 A 3 LEU A 129 ? MET A 134 ? LEU A 129 MET A 134 A 4 HIS A 117 ? ILE A 123 ? HIS A 117 ILE A 123 B 1 VAL A 60 ? THR A 64 ? VAL A 60 THR A 64 B 2 ARG A 43 ? GLU A 48 ? ARG A 43 GLU A 48 B 3 LEU A 84 ? THR A 89 ? LEU A 84 THR A 89 B 4 SER A 138 ? MET A 145 ? SER A 138 MET A 145 B 5 ALA A 148 ? ARG A 149 ? ALA A 148 ARG A 149 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 35 ? N VAL A 35 O ARG A 96 ? O ARG A 96 A 2 3 N LEU A 93 ? N LEU A 93 O ILE A 133 ? O ILE A 133 A 3 4 O VAL A 130 ? O VAL A 130 N SER A 122 ? N SER A 122 B 1 2 O THR A 64 ? O THR A 64 N ILE A 44 ? N ILE A 44 B 2 3 N THR A 45 ? N THR A 45 O LYS A 87 ? O LYS A 87 B 3 4 N LEU A 84 ? N LEU A 84 O LEU A 143 ? O LEU A 143 B 4 5 N MET A 145 ? N MET A 145 O ALA A 148 ? O ALA A 148 # _database_PDB_matrix.entry_id 2DVK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DVK _atom_sites.fract_transf_matrix[1][1] 0.017899 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014239 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010920 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLY 2 2 ? ? ? A . n A 1 3 SER 3 3 ? ? ? A . n A 1 4 ILE 4 4 ? ? ? A . n A 1 5 GLU 5 5 ? ? ? A . n A 1 6 GLU 6 6 ? ? ? A . n A 1 7 VAL 7 7 ? ? ? A . n A 1 8 LEU 8 8 ? ? ? A . n A 1 9 LEU 9 9 ? ? ? A . n A 1 10 GLU 10 10 ? ? ? A . n A 1 11 GLU 11 11 ? ? ? A . n A 1 12 ARG 12 12 ? ? ? A . n A 1 13 LEU 13 13 ? ? ? A . n A 1 14 ILE 14 14 ? ? ? A . n A 1 15 GLY 15 15 ? ? ? A . n A 1 16 TYR 16 16 ? ? ? A . n A 1 17 LEU 17 17 ? ? ? A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 CYS 40 40 40 CYS CYS A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 HIS 52 52 52 HIS HIS A . n A 1 53 TRP 53 53 53 TRP TRP A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ARG 55 55 ? ? ? A . n A 1 56 ASN 56 56 ? ? ? A . n A 1 57 GLY 57 57 ? ? ? A . n A 1 58 ALA 58 58 ? ? ? A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 TYR 62 62 62 TYR TYR A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 HIS 65 65 65 HIS HIS A . n A 1 66 HIS 66 66 66 HIS HIS A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 PHE 81 81 81 PHE PHE A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 TRP 85 85 85 TRP TRP A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 TRP 100 100 100 TRP TRP A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 CYS 102 102 102 CYS CYS A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 PHE 115 115 115 PHE PHE A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 HIS 117 117 117 HIS HIS A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 MET 134 134 134 MET MET A . n A 1 135 SER 135 135 135 SER SER A . n A 1 136 SER 136 136 136 SER SER A . n A 1 137 GLN 137 137 137 GLN GLN A . n A 1 138 SER 138 138 138 SER SER A . n A 1 139 MET 139 139 139 MET MET A . n A 1 140 SER 140 140 140 SER SER A . n A 1 141 VAL 141 141 141 VAL VAL A . n A 1 142 PRO 142 142 142 PRO PRO A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 MET 145 145 145 MET MET A . n A 1 146 GLU 146 146 146 GLU GLU A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 ARG 149 149 149 ARG ARG A . n A 1 150 ILE 150 150 150 ILE ILE A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 ASP 154 154 154 ASP ASP A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 LEU 156 156 156 LEU LEU A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 MET 158 158 158 MET MET A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 ILE 160 160 160 ILE ILE A . n A 1 161 GLU 161 161 161 GLU GLU A . n A 1 162 LYS 162 162 162 LYS LYS A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 ASN 164 164 164 ASN ASN A . n A 1 165 THR 165 165 165 THR THR A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 VAL 168 168 168 VAL VAL A . n A 1 169 GLU 169 169 169 GLU GLU A . n A 1 170 SER 170 170 170 SER SER A . n A 1 171 ARG 171 171 171 ARG ARG A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 GLY 173 173 173 GLY GLY A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 ASP 175 175 175 ASP ASP A . n A 1 176 THR 176 176 176 THR THR A . n A 1 177 PHE 177 177 177 PHE PHE A . n A 1 178 SER 178 178 178 SER SER A . n A 1 179 ARG 179 179 179 ARG ARG A . n A 1 180 GLU 180 180 180 GLU GLU A . n A 1 181 VAL 181 181 181 VAL VAL A . n A 1 182 GLU 182 182 182 GLU GLU A . n A 1 183 GLU 183 183 183 GLU GLU A . n A 1 184 LEU 184 184 184 LEU LEU A . n A 1 185 VAL 185 185 185 VAL VAL A . n A 1 186 GLU 186 186 186 GLU GLU A . n A 1 187 CYS 187 187 187 CYS CYS A . n A 1 188 PHE 188 188 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 189 1 HOH HOH A . B 2 HOH 2 190 2 HOH HOH A . B 2 HOH 3 191 3 HOH HOH A . B 2 HOH 4 192 4 HOH HOH A . B 2 HOH 5 193 5 HOH HOH A . B 2 HOH 6 194 6 HOH HOH A . B 2 HOH 7 195 7 HOH HOH A . B 2 HOH 8 196 8 HOH HOH A . B 2 HOH 9 197 9 HOH HOH A . B 2 HOH 10 198 10 HOH HOH A . B 2 HOH 11 199 11 HOH HOH A . B 2 HOH 12 200 12 HOH HOH A . B 2 HOH 13 201 13 HOH HOH A . B 2 HOH 14 202 14 HOH HOH A . B 2 HOH 15 203 15 HOH HOH A . B 2 HOH 16 204 16 HOH HOH A . B 2 HOH 17 205 17 HOH HOH A . B 2 HOH 18 206 18 HOH HOH A . B 2 HOH 19 207 19 HOH HOH A . B 2 HOH 20 208 20 HOH HOH A . B 2 HOH 21 209 21 HOH HOH A . B 2 HOH 22 210 22 HOH HOH A . B 2 HOH 23 211 23 HOH HOH A . B 2 HOH 24 212 24 HOH HOH A . B 2 HOH 25 213 25 HOH HOH A . B 2 HOH 26 214 26 HOH HOH A . B 2 HOH 27 215 27 HOH HOH A . B 2 HOH 28 216 28 HOH HOH A . B 2 HOH 29 217 29 HOH HOH A . B 2 HOH 30 218 30 HOH HOH A . B 2 HOH 31 219 31 HOH HOH A . B 2 HOH 32 220 32 HOH HOH A . B 2 HOH 33 221 33 HOH HOH A . B 2 HOH 34 222 34 HOH HOH A . B 2 HOH 35 223 35 HOH HOH A . B 2 HOH 36 224 36 HOH HOH A . B 2 HOH 37 225 37 HOH HOH A . B 2 HOH 38 226 38 HOH HOH A . B 2 HOH 39 227 39 HOH HOH A . B 2 HOH 40 228 40 HOH HOH A . B 2 HOH 41 229 41 HOH HOH A . B 2 HOH 42 230 42 HOH HOH A . B 2 HOH 43 231 43 HOH HOH A . B 2 HOH 44 232 44 HOH HOH A . B 2 HOH 45 233 45 HOH HOH A . B 2 HOH 46 234 46 HOH HOH A . B 2 HOH 47 235 47 HOH HOH A . B 2 HOH 48 236 48 HOH HOH A . B 2 HOH 49 237 49 HOH HOH A . B 2 HOH 50 238 50 HOH HOH A . B 2 HOH 51 239 51 HOH HOH A . B 2 HOH 52 240 52 HOH HOH A . B 2 HOH 53 241 53 HOH HOH A . B 2 HOH 54 242 54 HOH HOH A . B 2 HOH 55 243 55 HOH HOH A . B 2 HOH 56 244 56 HOH HOH A . B 2 HOH 57 245 57 HOH HOH A . B 2 HOH 58 246 58 HOH HOH A . B 2 HOH 59 247 59 HOH HOH A . B 2 HOH 60 248 60 HOH HOH A . B 2 HOH 61 249 61 HOH HOH A . B 2 HOH 62 250 62 HOH HOH A . B 2 HOH 63 251 63 HOH HOH A . B 2 HOH 64 252 64 HOH HOH A . B 2 HOH 65 253 65 HOH HOH A . B 2 HOH 66 254 66 HOH HOH A . B 2 HOH 67 255 67 HOH HOH A . B 2 HOH 68 256 68 HOH HOH A . B 2 HOH 69 257 69 HOH HOH A . B 2 HOH 70 258 70 HOH HOH A . B 2 HOH 71 259 71 HOH HOH A . B 2 HOH 72 260 72 HOH HOH A . B 2 HOH 73 261 73 HOH HOH A . B 2 HOH 74 262 74 HOH HOH A . B 2 HOH 75 263 75 HOH HOH A . B 2 HOH 76 264 76 HOH HOH A . B 2 HOH 77 265 77 HOH HOH A . B 2 HOH 78 266 78 HOH HOH A . B 2 HOH 79 267 79 HOH HOH A . B 2 HOH 80 268 80 HOH HOH A . B 2 HOH 81 269 81 HOH HOH A . B 2 HOH 82 270 82 HOH HOH A . B 2 HOH 83 271 83 HOH HOH A . B 2 HOH 84 272 84 HOH HOH A . B 2 HOH 85 273 85 HOH HOH A . B 2 HOH 86 274 86 HOH HOH A . B 2 HOH 87 275 87 HOH HOH A . B 2 HOH 88 276 88 HOH HOH A . B 2 HOH 89 277 89 HOH HOH A . B 2 HOH 90 278 90 HOH HOH A . B 2 HOH 91 279 91 HOH HOH A . B 2 HOH 92 280 92 HOH HOH A . B 2 HOH 93 281 93 HOH HOH A . B 2 HOH 94 282 94 HOH HOH A . B 2 HOH 95 283 95 HOH HOH A . B 2 HOH 96 284 96 HOH HOH A . B 2 HOH 97 285 97 HOH HOH A . B 2 HOH 98 286 98 HOH HOH A . B 2 HOH 99 287 99 HOH HOH A . B 2 HOH 100 288 100 HOH HOH A . B 2 HOH 101 289 101 HOH HOH A . B 2 HOH 102 290 102 HOH HOH A . B 2 HOH 103 291 103 HOH HOH A . B 2 HOH 104 292 104 HOH HOH A . B 2 HOH 105 293 105 HOH HOH A . B 2 HOH 106 294 106 HOH HOH A . B 2 HOH 107 295 107 HOH HOH A . B 2 HOH 108 296 108 HOH HOH A . B 2 HOH 109 297 109 HOH HOH A . B 2 HOH 110 298 110 HOH HOH A . B 2 HOH 111 299 111 HOH HOH A . B 2 HOH 112 300 112 HOH HOH A . B 2 HOH 113 301 113 HOH HOH A . B 2 HOH 114 302 114 HOH HOH A . B 2 HOH 115 303 115 HOH HOH A . B 2 HOH 116 304 116 HOH HOH A . B 2 HOH 117 305 117 HOH HOH A . B 2 HOH 118 306 118 HOH HOH A . B 2 HOH 119 307 119 HOH HOH A . B 2 HOH 120 308 120 HOH HOH A . B 2 HOH 121 309 121 HOH HOH A . B 2 HOH 122 310 122 HOH HOH A . B 2 HOH 123 311 123 HOH HOH A . B 2 HOH 124 312 124 HOH HOH A . B 2 HOH 125 313 125 HOH HOH A . B 2 HOH 126 314 126 HOH HOH A . B 2 HOH 127 315 127 HOH HOH A . B 2 HOH 128 316 128 HOH HOH A . B 2 HOH 129 317 129 HOH HOH A . B 2 HOH 130 318 130 HOH HOH A . B 2 HOH 131 319 131 HOH HOH A . B 2 HOH 132 320 132 HOH HOH A . B 2 HOH 133 321 133 HOH HOH A . B 2 HOH 134 322 134 HOH HOH A . B 2 HOH 135 323 135 HOH HOH A . B 2 HOH 136 324 136 HOH HOH A . B 2 HOH 137 325 137 HOH HOH A . B 2 HOH 138 326 138 HOH HOH A . B 2 HOH 139 327 139 HOH HOH A . B 2 HOH 140 328 140 HOH HOH A . B 2 HOH 141 329 141 HOH HOH A . B 2 HOH 142 330 142 HOH HOH A . B 2 HOH 143 331 143 HOH HOH A . B 2 HOH 144 332 144 HOH HOH A . B 2 HOH 145 333 145 HOH HOH A . B 2 HOH 146 334 146 HOH HOH A . B 2 HOH 147 335 147 HOH HOH A . B 2 HOH 148 336 148 HOH HOH A . B 2 HOH 149 337 149 HOH HOH A . B 2 HOH 150 338 150 HOH HOH A . B 2 HOH 151 339 151 HOH HOH A . B 2 HOH 152 340 152 HOH HOH A . B 2 HOH 153 341 153 HOH HOH A . B 2 HOH 154 342 154 HOH HOH A . B 2 HOH 155 343 155 HOH HOH A . B 2 HOH 156 344 156 HOH HOH A . B 2 HOH 157 345 157 HOH HOH A . B 2 HOH 158 346 158 HOH HOH A . B 2 HOH 159 347 159 HOH HOH A . B 2 HOH 160 348 160 HOH HOH A . B 2 HOH 161 349 161 HOH HOH A . B 2 HOH 162 350 162 HOH HOH A . B 2 HOH 163 351 163 HOH HOH A . B 2 HOH 164 352 164 HOH HOH A . B 2 HOH 165 353 165 HOH HOH A . B 2 HOH 166 354 166 HOH HOH A . B 2 HOH 167 355 167 HOH HOH A . B 2 HOH 168 356 168 HOH HOH A . B 2 HOH 169 357 169 HOH HOH A . B 2 HOH 170 358 170 HOH HOH A . B 2 HOH 171 359 171 HOH HOH A . B 2 HOH 172 360 172 HOH HOH A . B 2 HOH 173 361 173 HOH HOH A . B 2 HOH 174 362 174 HOH HOH A . B 2 HOH 175 363 175 HOH HOH A . B 2 HOH 176 364 176 HOH HOH A . B 2 HOH 177 365 177 HOH HOH A . B 2 HOH 178 366 178 HOH HOH A . B 2 HOH 179 367 179 HOH HOH A . B 2 HOH 180 368 180 HOH HOH A . B 2 HOH 181 369 181 HOH HOH A . B 2 HOH 182 370 182 HOH HOH A . B 2 HOH 183 371 183 HOH HOH A . B 2 HOH 184 372 184 HOH HOH A . B 2 HOH 185 373 185 HOH HOH A . B 2 HOH 186 374 186 HOH HOH A . B 2 HOH 187 375 187 HOH HOH A . B 2 HOH 188 376 188 HOH HOH A . B 2 HOH 189 377 189 HOH HOH A . B 2 HOH 190 378 190 HOH HOH A . B 2 HOH 191 379 191 HOH HOH A . B 2 HOH 192 380 192 HOH HOH A . B 2 HOH 193 381 193 HOH HOH A . B 2 HOH 194 382 194 HOH HOH A . B 2 HOH 195 383 195 HOH HOH A . B 2 HOH 196 384 196 HOH HOH A . B 2 HOH 197 385 197 HOH HOH A . B 2 HOH 198 386 198 HOH HOH A . B 2 HOH 199 387 199 HOH HOH A . B 2 HOH 200 388 200 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2700 ? 1 MORE -22 ? 1 'SSA (A^2)' 15330 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 70.2320000000 0.0000000000 0.0000000000 -1.0000000000 91.5790000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 345 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-01-31 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 NE1 A TRP 53 ? ? CE2 A TRP 53 ? ? 1.483 1.371 0.112 0.013 N 2 1 NE1 A TRP 100 ? ? CE2 A TRP 100 ? ? 1.485 1.371 0.114 0.013 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 115 ? ? -106.34 65.99 2 1 SER A 127 ? ? 73.85 -4.15 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLY 2 ? A GLY 2 3 1 Y 1 A SER 3 ? A SER 3 4 1 Y 1 A ILE 4 ? A ILE 4 5 1 Y 1 A GLU 5 ? A GLU 5 6 1 Y 1 A GLU 6 ? A GLU 6 7 1 Y 1 A VAL 7 ? A VAL 7 8 1 Y 1 A LEU 8 ? A LEU 8 9 1 Y 1 A LEU 9 ? A LEU 9 10 1 Y 1 A GLU 10 ? A GLU 10 11 1 Y 1 A GLU 11 ? A GLU 11 12 1 Y 1 A ARG 12 ? A ARG 12 13 1 Y 1 A LEU 13 ? A LEU 13 14 1 Y 1 A ILE 14 ? A ILE 14 15 1 Y 1 A GLY 15 ? A GLY 15 16 1 Y 1 A TYR 16 ? A TYR 16 17 1 Y 1 A LEU 17 ? A LEU 17 18 1 Y 1 A ARG 55 ? A ARG 55 19 1 Y 1 A ASN 56 ? A ASN 56 20 1 Y 1 A GLY 57 ? A GLY 57 21 1 Y 1 A ALA 58 ? A ALA 58 22 1 Y 1 A PHE 188 ? A PHE 188 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #