HEADER LYASE 01-AUG-06 2DVT TITLE CRYSTAL STRUCTURE OF 2,6-DIHYDROXYBENZOATE DECARBOXYLASE FROM TITLE 2 RHIZOBIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOPHILIC REVERSIBLE GAMMA-RESORCYLATE DECARBOXYLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: 2,6-DIHYDROXYBENZOATE DECARBOXYLASE; COMPND 5 EC: 4.1.1.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM SP.; SOURCE 3 ORGANISM_TAXID: 267998; SOURCE 4 STRAIN: MTP-10005 KEYWDS TIM BARREL, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GOTO REVDAT 4 13-MAR-24 2DVT 1 REMARK LINK REVDAT 3 13-JUL-11 2DVT 1 VERSN REVDAT 2 24-FEB-09 2DVT 1 VERSN REVDAT 1 19-SEP-06 2DVT 0 JRNL AUTH M.GOTO,H.HAYASHI,I.MIYAHARA,K.HIROTSU,M.YOSHIDA,T.OIKAWA JRNL TITL CRYSTAL STRUCTURES OF NONOXIDATIVE ZN-DEPENDENT JRNL TITL 2 2,6-DIHYDROXYBENZOATE (GAMMA-RESORCYLATE) DECARBOXYLASE FROM JRNL TITL 3 RHIZOBIUM SP. STRAIN MTP-10005 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2767005.170 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 163091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 16229 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 24163 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 2747 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.005 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10427 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 1223 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.72000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.13 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.840 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.960 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.390 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 18.400; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 11.110; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 54.09 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DVT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000025904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 163091 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.291 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, HEPES-NA, ETHYLENEGLYCOL, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 54.68550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.58150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.90350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.58150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 54.68550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.90350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER SAME AS THE REMARK 300 ASYMMETRIC UNIT OF A CRYSTAL STRUCTURE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -226.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 326 REMARK 465 ALA A 327 REMARK 465 ASP B 325 REMARK 465 GLY B 326 REMARK 465 ALA B 327 REMARK 465 ALA C 21 REMARK 465 GLY C 22 REMARK 465 PHE C 23 REMARK 465 ALA C 327 REMARK 465 ALA D 21 REMARK 465 GLY D 22 REMARK 465 PHE D 23 REMARK 465 ASP D 325 REMARK 465 GLY D 326 REMARK 465 ALA D 327 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 23 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 ARG A 320 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 23 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 ARG B 71 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 ARG B 320 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 71 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 320 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 19 CG OD1 OD2 REMARK 470 LYS D 156 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 21 -72.72 -60.47 REMARK 500 PRO A 25 -106.04 -56.12 REMARK 500 ASP A 27 -51.18 68.49 REMARK 500 ILE A 39 -43.55 -131.43 REMARK 500 ASP A 41 -92.36 -106.17 REMARK 500 ALA A 63 -121.69 47.30 REMARK 500 ARG A 91 67.10 -152.03 REMARK 500 TRP A 187 -52.71 -162.25 REMARK 500 ARG A 247 -162.47 -117.92 REMARK 500 ASP A 287 24.30 83.30 REMARK 500 ARG A 315 -57.94 -146.21 REMARK 500 ASP B 27 -42.96 71.78 REMARK 500 ASP B 41 -89.32 -103.66 REMARK 500 ALA B 63 -120.99 45.49 REMARK 500 TRP B 187 -50.49 -160.13 REMARK 500 ARG B 247 -163.73 -118.65 REMARK 500 ASP B 287 23.93 84.21 REMARK 500 ARG B 315 -59.93 -145.47 REMARK 500 ILE C 39 -48.95 -134.38 REMARK 500 ASP C 41 -92.26 -108.42 REMARK 500 ALA C 63 -123.38 48.80 REMARK 500 TRP C 187 -51.07 -162.55 REMARK 500 ARG C 247 -162.51 -121.61 REMARK 500 ASP C 287 23.09 83.40 REMARK 500 ARG C 315 -59.59 -146.59 REMARK 500 ILE D 39 -48.75 -135.54 REMARK 500 ASP D 41 -93.19 -100.31 REMARK 500 ASN D 60 -174.39 -67.86 REMARK 500 ALA D 63 -122.87 46.98 REMARK 500 TRP D 187 -53.96 -161.76 REMARK 500 ARG D 247 -153.52 -117.49 REMARK 500 ASP D 287 22.77 82.24 REMARK 500 ARG D 315 -58.02 -144.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE1 REMARK 620 2 HIS A 10 NE2 115.0 REMARK 620 3 HIS A 164 NE2 87.3 94.9 REMARK 620 4 ASP A 287 OD1 89.5 92.2 173.0 REMARK 620 5 HOH A1529 O 140.0 104.9 92.3 86.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 8 OE1 REMARK 620 2 HIS B 10 NE2 114.5 REMARK 620 3 HIS B 164 NE2 89.0 94.5 REMARK 620 4 ASP B 287 OD1 85.8 95.0 170.3 REMARK 620 5 HOH B1541 O 140.0 105.2 92.5 86.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 8 OE1 REMARK 620 2 HIS C 10 NE2 116.2 REMARK 620 3 HIS C 164 NE2 89.3 96.4 REMARK 620 4 ASP C 287 OD1 86.0 93.4 170.2 REMARK 620 5 HOH C1555 O 140.9 102.8 89.6 88.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 8 OE1 REMARK 620 2 HIS D 10 NE2 117.2 REMARK 620 3 HIS D 164 NE2 90.4 97.1 REMARK 620 4 ASP D 287 OD1 86.3 93.2 169.6 REMARK 620 5 HOH D1550 O 144.3 98.4 87.2 89.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 1504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DVU RELATED DB: PDB REMARK 900 RELATED ID: 2DVX RELATED DB: PDB DBREF 2DVT A 1 327 UNP Q60GU1 Q60GU1_9RHIZ 1 327 DBREF 2DVT B 1 327 UNP Q60GU1 Q60GU1_9RHIZ 1 327 DBREF 2DVT C 1 327 UNP Q60GU1 Q60GU1_9RHIZ 1 327 DBREF 2DVT D 1 327 UNP Q60GU1 Q60GU1_9RHIZ 1 327 SEQRES 1 A 327 MET GLN GLY LYS VAL ALA LEU GLU GLU HIS PHE ALA ILE SEQRES 2 A 327 PRO GLU THR LEU GLN ASP SER ALA GLY PHE VAL PRO GLY SEQRES 3 A 327 ASP TYR TRP LYS GLU LEU GLN HIS ARG LEU LEU ASP ILE SEQRES 4 A 327 GLN ASP THR ARG LEU LYS LEU MET ASP ALA HIS GLY ILE SEQRES 5 A 327 GLU THR MET ILE LEU SER LEU ASN ALA PRO ALA VAL GLN SEQRES 6 A 327 ALA ILE PRO ASP ARG ARG LYS ALA ILE GLU ILE ALA ARG SEQRES 7 A 327 ARG ALA ASN ASP VAL LEU ALA GLU GLU CYS ALA LYS ARG SEQRES 8 A 327 PRO ASP ARG PHE LEU ALA PHE ALA ALA LEU PRO LEU GLN SEQRES 9 A 327 ASP PRO ASP ALA ALA THR GLU GLU LEU GLN ARG CYS VAL SEQRES 10 A 327 ASN ASP LEU GLY PHE VAL GLY ALA LEU VAL ASN GLY PHE SEQRES 11 A 327 SER GLN GLU GLY ASP GLY GLN THR PRO LEU TYR TYR ASP SEQRES 12 A 327 LEU PRO GLN TYR ARG PRO PHE TRP GLY GLU VAL GLU LYS SEQRES 13 A 327 LEU ASP VAL PRO PHE TYR LEU HIS PRO ARG ASN PRO LEU SEQRES 14 A 327 PRO GLN ASP SER ARG ILE TYR ASP GLY HIS PRO TRP LEU SEQRES 15 A 327 LEU GLY PRO THR TRP ALA PHE ALA GLN GLU THR ALA VAL SEQRES 16 A 327 HIS ALA LEU ARG LEU MET ALA SER GLY LEU PHE ASP GLU SEQRES 17 A 327 HIS PRO ARG LEU ASN ILE ILE LEU GLY HIS MET GLY GLU SEQRES 18 A 327 GLY LEU PRO TYR MET MET TRP ARG ILE ASP HIS ARG ASN SEQRES 19 A 327 ALA TRP VAL LYS LEU PRO PRO ARG TYR PRO ALA LYS ARG SEQRES 20 A 327 ARG PHE MET ASP TYR PHE ASN GLU ASN PHE HIS ILE THR SEQRES 21 A 327 THR SER GLY ASN PHE ARG THR GLN THR LEU ILE ASP ALA SEQRES 22 A 327 ILE LEU GLU ILE GLY ALA ASP ARG ILE LEU PHE SER THR SEQRES 23 A 327 ASP TRP PRO PHE GLU ASN ILE ASP HIS ALA SER ASP TRP SEQRES 24 A 327 PHE ASN ALA THR SER ILE ALA GLU ALA ASP ARG VAL LYS SEQRES 25 A 327 ILE GLY ARG THR ASN ALA ARG ARG LEU PHE LYS LEU ASP SEQRES 26 A 327 GLY ALA SEQRES 1 B 327 MET GLN GLY LYS VAL ALA LEU GLU GLU HIS PHE ALA ILE SEQRES 2 B 327 PRO GLU THR LEU GLN ASP SER ALA GLY PHE VAL PRO GLY SEQRES 3 B 327 ASP TYR TRP LYS GLU LEU GLN HIS ARG LEU LEU ASP ILE SEQRES 4 B 327 GLN ASP THR ARG LEU LYS LEU MET ASP ALA HIS GLY ILE SEQRES 5 B 327 GLU THR MET ILE LEU SER LEU ASN ALA PRO ALA VAL GLN SEQRES 6 B 327 ALA ILE PRO ASP ARG ARG LYS ALA ILE GLU ILE ALA ARG SEQRES 7 B 327 ARG ALA ASN ASP VAL LEU ALA GLU GLU CYS ALA LYS ARG SEQRES 8 B 327 PRO ASP ARG PHE LEU ALA PHE ALA ALA LEU PRO LEU GLN SEQRES 9 B 327 ASP PRO ASP ALA ALA THR GLU GLU LEU GLN ARG CYS VAL SEQRES 10 B 327 ASN ASP LEU GLY PHE VAL GLY ALA LEU VAL ASN GLY PHE SEQRES 11 B 327 SER GLN GLU GLY ASP GLY GLN THR PRO LEU TYR TYR ASP SEQRES 12 B 327 LEU PRO GLN TYR ARG PRO PHE TRP GLY GLU VAL GLU LYS SEQRES 13 B 327 LEU ASP VAL PRO PHE TYR LEU HIS PRO ARG ASN PRO LEU SEQRES 14 B 327 PRO GLN ASP SER ARG ILE TYR ASP GLY HIS PRO TRP LEU SEQRES 15 B 327 LEU GLY PRO THR TRP ALA PHE ALA GLN GLU THR ALA VAL SEQRES 16 B 327 HIS ALA LEU ARG LEU MET ALA SER GLY LEU PHE ASP GLU SEQRES 17 B 327 HIS PRO ARG LEU ASN ILE ILE LEU GLY HIS MET GLY GLU SEQRES 18 B 327 GLY LEU PRO TYR MET MET TRP ARG ILE ASP HIS ARG ASN SEQRES 19 B 327 ALA TRP VAL LYS LEU PRO PRO ARG TYR PRO ALA LYS ARG SEQRES 20 B 327 ARG PHE MET ASP TYR PHE ASN GLU ASN PHE HIS ILE THR SEQRES 21 B 327 THR SER GLY ASN PHE ARG THR GLN THR LEU ILE ASP ALA SEQRES 22 B 327 ILE LEU GLU ILE GLY ALA ASP ARG ILE LEU PHE SER THR SEQRES 23 B 327 ASP TRP PRO PHE GLU ASN ILE ASP HIS ALA SER ASP TRP SEQRES 24 B 327 PHE ASN ALA THR SER ILE ALA GLU ALA ASP ARG VAL LYS SEQRES 25 B 327 ILE GLY ARG THR ASN ALA ARG ARG LEU PHE LYS LEU ASP SEQRES 26 B 327 GLY ALA SEQRES 1 C 327 MET GLN GLY LYS VAL ALA LEU GLU GLU HIS PHE ALA ILE SEQRES 2 C 327 PRO GLU THR LEU GLN ASP SER ALA GLY PHE VAL PRO GLY SEQRES 3 C 327 ASP TYR TRP LYS GLU LEU GLN HIS ARG LEU LEU ASP ILE SEQRES 4 C 327 GLN ASP THR ARG LEU LYS LEU MET ASP ALA HIS GLY ILE SEQRES 5 C 327 GLU THR MET ILE LEU SER LEU ASN ALA PRO ALA VAL GLN SEQRES 6 C 327 ALA ILE PRO ASP ARG ARG LYS ALA ILE GLU ILE ALA ARG SEQRES 7 C 327 ARG ALA ASN ASP VAL LEU ALA GLU GLU CYS ALA LYS ARG SEQRES 8 C 327 PRO ASP ARG PHE LEU ALA PHE ALA ALA LEU PRO LEU GLN SEQRES 9 C 327 ASP PRO ASP ALA ALA THR GLU GLU LEU GLN ARG CYS VAL SEQRES 10 C 327 ASN ASP LEU GLY PHE VAL GLY ALA LEU VAL ASN GLY PHE SEQRES 11 C 327 SER GLN GLU GLY ASP GLY GLN THR PRO LEU TYR TYR ASP SEQRES 12 C 327 LEU PRO GLN TYR ARG PRO PHE TRP GLY GLU VAL GLU LYS SEQRES 13 C 327 LEU ASP VAL PRO PHE TYR LEU HIS PRO ARG ASN PRO LEU SEQRES 14 C 327 PRO GLN ASP SER ARG ILE TYR ASP GLY HIS PRO TRP LEU SEQRES 15 C 327 LEU GLY PRO THR TRP ALA PHE ALA GLN GLU THR ALA VAL SEQRES 16 C 327 HIS ALA LEU ARG LEU MET ALA SER GLY LEU PHE ASP GLU SEQRES 17 C 327 HIS PRO ARG LEU ASN ILE ILE LEU GLY HIS MET GLY GLU SEQRES 18 C 327 GLY LEU PRO TYR MET MET TRP ARG ILE ASP HIS ARG ASN SEQRES 19 C 327 ALA TRP VAL LYS LEU PRO PRO ARG TYR PRO ALA LYS ARG SEQRES 20 C 327 ARG PHE MET ASP TYR PHE ASN GLU ASN PHE HIS ILE THR SEQRES 21 C 327 THR SER GLY ASN PHE ARG THR GLN THR LEU ILE ASP ALA SEQRES 22 C 327 ILE LEU GLU ILE GLY ALA ASP ARG ILE LEU PHE SER THR SEQRES 23 C 327 ASP TRP PRO PHE GLU ASN ILE ASP HIS ALA SER ASP TRP SEQRES 24 C 327 PHE ASN ALA THR SER ILE ALA GLU ALA ASP ARG VAL LYS SEQRES 25 C 327 ILE GLY ARG THR ASN ALA ARG ARG LEU PHE LYS LEU ASP SEQRES 26 C 327 GLY ALA SEQRES 1 D 327 MET GLN GLY LYS VAL ALA LEU GLU GLU HIS PHE ALA ILE SEQRES 2 D 327 PRO GLU THR LEU GLN ASP SER ALA GLY PHE VAL PRO GLY SEQRES 3 D 327 ASP TYR TRP LYS GLU LEU GLN HIS ARG LEU LEU ASP ILE SEQRES 4 D 327 GLN ASP THR ARG LEU LYS LEU MET ASP ALA HIS GLY ILE SEQRES 5 D 327 GLU THR MET ILE LEU SER LEU ASN ALA PRO ALA VAL GLN SEQRES 6 D 327 ALA ILE PRO ASP ARG ARG LYS ALA ILE GLU ILE ALA ARG SEQRES 7 D 327 ARG ALA ASN ASP VAL LEU ALA GLU GLU CYS ALA LYS ARG SEQRES 8 D 327 PRO ASP ARG PHE LEU ALA PHE ALA ALA LEU PRO LEU GLN SEQRES 9 D 327 ASP PRO ASP ALA ALA THR GLU GLU LEU GLN ARG CYS VAL SEQRES 10 D 327 ASN ASP LEU GLY PHE VAL GLY ALA LEU VAL ASN GLY PHE SEQRES 11 D 327 SER GLN GLU GLY ASP GLY GLN THR PRO LEU TYR TYR ASP SEQRES 12 D 327 LEU PRO GLN TYR ARG PRO PHE TRP GLY GLU VAL GLU LYS SEQRES 13 D 327 LEU ASP VAL PRO PHE TYR LEU HIS PRO ARG ASN PRO LEU SEQRES 14 D 327 PRO GLN ASP SER ARG ILE TYR ASP GLY HIS PRO TRP LEU SEQRES 15 D 327 LEU GLY PRO THR TRP ALA PHE ALA GLN GLU THR ALA VAL SEQRES 16 D 327 HIS ALA LEU ARG LEU MET ALA SER GLY LEU PHE ASP GLU SEQRES 17 D 327 HIS PRO ARG LEU ASN ILE ILE LEU GLY HIS MET GLY GLU SEQRES 18 D 327 GLY LEU PRO TYR MET MET TRP ARG ILE ASP HIS ARG ASN SEQRES 19 D 327 ALA TRP VAL LYS LEU PRO PRO ARG TYR PRO ALA LYS ARG SEQRES 20 D 327 ARG PHE MET ASP TYR PHE ASN GLU ASN PHE HIS ILE THR SEQRES 21 D 327 THR SER GLY ASN PHE ARG THR GLN THR LEU ILE ASP ALA SEQRES 22 D 327 ILE LEU GLU ILE GLY ALA ASP ARG ILE LEU PHE SER THR SEQRES 23 D 327 ASP TRP PRO PHE GLU ASN ILE ASP HIS ALA SER ASP TRP SEQRES 24 D 327 PHE ASN ALA THR SER ILE ALA GLU ALA ASP ARG VAL LYS SEQRES 25 D 327 ILE GLY ARG THR ASN ALA ARG ARG LEU PHE LYS LEU ASP SEQRES 26 D 327 GLY ALA HET ZN A1501 1 HET ZN B1502 1 HET ZN C1503 1 HET ZN D1504 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *1223(H2 O) HELIX 1 1 ILE A 13 GLN A 18 1 6 HELIX 2 2 ASP A 19 ALA A 21 5 3 HELIX 3 3 ASP A 27 ASP A 38 1 12 HELIX 4 4 ASP A 41 HIS A 50 1 10 HELIX 5 5 PRO A 62 ILE A 67 5 6 HELIX 6 6 ASP A 69 ARG A 91 1 23 HELIX 7 7 ASP A 105 ASP A 119 1 15 HELIX 8 8 LEU A 144 GLN A 146 5 3 HELIX 9 9 TYR A 147 ASP A 158 1 12 HELIX 10 10 LEU A 169 ASP A 177 5 9 HELIX 11 11 HIS A 179 THR A 186 5 8 HELIX 12 12 TRP A 187 SER A 203 1 17 HELIX 13 13 GLY A 204 HIS A 209 1 6 HELIX 14 14 GLY A 217 GLU A 221 5 5 HELIX 15 15 GLY A 222 ARG A 233 1 12 HELIX 16 16 ARG A 248 ASN A 256 1 9 HELIX 17 17 ARG A 266 LEU A 275 1 10 HELIX 18 18 GLY A 278 ASP A 280 5 3 HELIX 19 19 ASN A 292 THR A 303 1 12 HELIX 20 20 ALA A 306 ARG A 315 1 10 HELIX 21 21 ARG A 315 PHE A 322 1 8 HELIX 22 22 ILE B 13 GLN B 18 1 6 HELIX 23 23 ASP B 19 ALA B 21 5 3 HELIX 24 24 TYR B 28 ASP B 38 1 11 HELIX 25 25 ASP B 41 HIS B 50 1 10 HELIX 26 26 PRO B 62 ILE B 67 5 6 HELIX 27 27 ASP B 69 ARG B 91 1 23 HELIX 28 28 ASP B 105 ASP B 119 1 15 HELIX 29 29 LEU B 144 GLN B 146 5 3 HELIX 30 30 TYR B 147 ASP B 158 1 12 HELIX 31 31 LEU B 169 ASP B 177 5 9 HELIX 32 32 HIS B 179 THR B 186 5 8 HELIX 33 33 TRP B 187 SER B 203 1 17 HELIX 34 34 GLY B 204 HIS B 209 1 6 HELIX 35 35 GLY B 217 GLU B 221 5 5 HELIX 36 36 GLY B 222 ARG B 233 1 12 HELIX 37 37 ARG B 248 ASN B 256 1 9 HELIX 38 38 ARG B 266 LEU B 275 1 10 HELIX 39 39 GLY B 278 ASP B 280 5 3 HELIX 40 40 ASN B 292 THR B 303 1 12 HELIX 41 41 ALA B 306 ARG B 315 1 10 HELIX 42 42 ARG B 315 PHE B 322 1 8 HELIX 43 43 ILE C 13 GLN C 18 1 6 HELIX 44 44 GLY C 26 ASP C 38 1 13 HELIX 45 45 ASP C 41 HIS C 50 1 10 HELIX 46 46 PRO C 62 ILE C 67 5 6 HELIX 47 47 ASP C 69 ARG C 91 1 23 HELIX 48 48 ASP C 105 ASP C 119 1 15 HELIX 49 49 LEU C 144 GLN C 146 5 3 HELIX 50 50 TYR C 147 ASP C 158 1 12 HELIX 51 51 LEU C 169 ASP C 177 5 9 HELIX 52 52 HIS C 179 THR C 186 5 8 HELIX 53 53 TRP C 187 SER C 203 1 17 HELIX 54 54 GLY C 204 HIS C 209 1 6 HELIX 55 55 GLY C 217 GLU C 221 5 5 HELIX 56 56 GLY C 222 ARG C 233 1 12 HELIX 57 57 ARG C 248 ASN C 256 1 9 HELIX 58 58 ARG C 266 LEU C 275 1 10 HELIX 59 59 GLY C 278 ASP C 280 5 3 HELIX 60 60 ASN C 292 THR C 303 1 12 HELIX 61 61 ALA C 306 ARG C 315 1 10 HELIX 62 62 ARG C 315 PHE C 322 1 8 HELIX 63 63 ILE D 13 GLN D 18 1 6 HELIX 64 64 GLY D 26 ASP D 38 1 13 HELIX 65 65 ASP D 41 HIS D 50 1 10 HELIX 66 66 PRO D 62 ILE D 67 5 6 HELIX 67 67 ASP D 69 ARG D 91 1 23 HELIX 68 68 ASP D 105 ASP D 119 1 15 HELIX 69 69 LEU D 144 GLN D 146 5 3 HELIX 70 70 TYR D 147 ASP D 158 1 12 HELIX 71 71 LEU D 169 ASP D 177 5 9 HELIX 72 72 HIS D 179 THR D 186 5 8 HELIX 73 73 TRP D 187 SER D 203 1 17 HELIX 74 74 GLY D 204 HIS D 209 1 6 HELIX 75 75 GLY D 217 GLU D 221 5 5 HELIX 76 76 GLY D 222 ARG D 233 1 12 HELIX 77 77 ARG D 248 ASN D 256 1 9 HELIX 78 78 ARG D 266 LEU D 275 1 10 HELIX 79 79 GLY D 278 ASP D 280 5 3 HELIX 80 80 ASN D 292 THR D 303 1 12 HELIX 81 81 ALA D 306 ARG D 315 1 10 HELIX 82 82 ARG D 315 PHE D 322 1 8 SHEET 1 A 8 LYS A 4 PHE A 11 0 SHEET 2 A 8 ILE A 52 LEU A 59 1 O ILE A 56 N ALA A 6 SHEET 3 A 8 PHE A 95 ALA A 99 1 O LEU A 96 N LEU A 57 SHEET 4 A 8 GLY A 124 ASN A 128 1 O GLY A 124 N ALA A 99 SHEET 5 A 8 PHE A 161 HIS A 164 1 O TYR A 162 N ALA A 125 SHEET 6 A 8 ILE A 214 LEU A 216 1 O ILE A 215 N PHE A 161 SHEET 7 A 8 PHE A 257 THR A 260 1 O HIS A 258 N LEU A 216 SHEET 8 A 8 ILE A 282 LEU A 283 1 O LEU A 283 N ILE A 259 SHEET 1 B 8 LYS B 4 PHE B 11 0 SHEET 2 B 8 ILE B 52 LEU B 59 1 O ILE B 56 N ALA B 6 SHEET 3 B 8 PHE B 95 ALA B 99 1 O LEU B 96 N LEU B 57 SHEET 4 B 8 GLY B 124 ASN B 128 1 O GLY B 124 N ALA B 99 SHEET 5 B 8 PHE B 161 HIS B 164 1 O TYR B 162 N ALA B 125 SHEET 6 B 8 ILE B 214 LEU B 216 1 O ILE B 215 N PHE B 161 SHEET 7 B 8 PHE B 257 THR B 260 1 O HIS B 258 N LEU B 216 SHEET 8 B 8 ILE B 282 LEU B 283 1 O LEU B 283 N ILE B 259 SHEET 1 C 8 LYS C 4 PHE C 11 0 SHEET 2 C 8 ILE C 52 LEU C 59 1 O ILE C 56 N ALA C 6 SHEET 3 C 8 PHE C 95 ALA C 99 1 O LEU C 96 N LEU C 57 SHEET 4 C 8 GLY C 124 ASN C 128 1 O GLY C 124 N ALA C 99 SHEET 5 C 8 PHE C 161 HIS C 164 1 O TYR C 162 N ALA C 125 SHEET 6 C 8 ILE C 214 LEU C 216 1 O ILE C 215 N PHE C 161 SHEET 7 C 8 PHE C 257 THR C 260 1 O HIS C 258 N LEU C 216 SHEET 8 C 8 ILE C 282 LEU C 283 1 O LEU C 283 N ILE C 259 SHEET 1 D 8 LYS D 4 PHE D 11 0 SHEET 2 D 8 ILE D 52 LEU D 59 1 O ILE D 56 N ALA D 6 SHEET 3 D 8 PHE D 95 ALA D 99 1 O LEU D 96 N LEU D 57 SHEET 4 D 8 GLY D 124 ASN D 128 1 O GLY D 124 N ALA D 99 SHEET 5 D 8 PHE D 161 HIS D 164 1 O TYR D 162 N ALA D 125 SHEET 6 D 8 ILE D 214 LEU D 216 1 O ILE D 215 N PHE D 161 SHEET 7 D 8 PHE D 257 THR D 260 1 O HIS D 258 N LEU D 216 SHEET 8 D 8 ILE D 282 LEU D 283 1 O LEU D 283 N ILE D 259 LINK OE1 GLU A 8 ZN ZN A1501 1555 1555 2.02 LINK NE2 HIS A 10 ZN ZN A1501 1555 1555 2.18 LINK NE2 HIS A 164 ZN ZN A1501 1555 1555 2.12 LINK OD1 ASP A 287 ZN ZN A1501 1555 1555 2.33 LINK ZN ZN A1501 O HOH A1529 1555 1555 2.12 LINK OE1 GLU B 8 ZN ZN B1502 1555 1555 2.10 LINK NE2 HIS B 10 ZN ZN B1502 1555 1555 2.22 LINK NE2 HIS B 164 ZN ZN B1502 1555 1555 2.17 LINK OD1 ASP B 287 ZN ZN B1502 1555 1555 2.24 LINK ZN ZN B1502 O HOH B1541 1555 1555 2.19 LINK OE1 GLU C 8 ZN ZN C1503 1555 1555 2.06 LINK NE2 HIS C 10 ZN ZN C1503 1555 1555 2.20 LINK NE2 HIS C 164 ZN ZN C1503 1555 1555 2.13 LINK OD1 ASP C 287 ZN ZN C1503 1555 1555 2.29 LINK ZN ZN C1503 O HOH C1555 1555 1555 2.27 LINK OE1 GLU D 8 ZN ZN D1504 1555 1555 2.07 LINK NE2 HIS D 10 ZN ZN D1504 1555 1555 2.19 LINK NE2 HIS D 164 ZN ZN D1504 1555 1555 2.19 LINK OD1 ASP D 287 ZN ZN D1504 1555 1555 2.27 LINK ZN ZN D1504 O HOH D1550 1555 1555 2.31 CISPEP 1 ALA A 61 PRO A 62 0 -0.04 CISPEP 2 TRP A 288 PRO A 289 0 0.12 CISPEP 3 ALA B 61 PRO B 62 0 -0.05 CISPEP 4 TRP B 288 PRO B 289 0 0.16 CISPEP 5 ALA C 61 PRO C 62 0 -0.04 CISPEP 6 TRP C 288 PRO C 289 0 0.28 CISPEP 7 ALA D 61 PRO D 62 0 -0.01 CISPEP 8 TRP D 288 PRO D 289 0 0.30 SITE 1 AC1 5 GLU A 8 HIS A 10 HIS A 164 ASP A 287 SITE 2 AC1 5 HOH A1529 SITE 1 AC2 5 GLU B 8 HIS B 10 HIS B 164 ASP B 287 SITE 2 AC2 5 HOH B1541 SITE 1 AC3 5 GLU C 8 HIS C 10 HIS C 164 ASP C 287 SITE 2 AC3 5 HOH C1555 SITE 1 AC4 5 GLU D 8 HIS D 10 HIS D 164 ASP D 287 SITE 2 AC4 5 HOH D1550 CRYST1 109.371 113.807 119.163 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009143 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008392 0.00000