data_2DWV # _entry.id 2DWV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DWV pdb_00002dwv 10.2210/pdb2dwv/pdb RCSB RCSB025942 ? ? WWPDB D_1000025942 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmi002016694.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DWV _pdbx_database_status.recvd_initial_deposition_date 2006-08-17 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ohnishi, S.' 1 'Kigawa, T.' 2 'Koshiba, S.' 3 'Tomizawa, T.' 4 'Sato, M.' 5 'Tochio, N.' 6 'Inoue, M.' 7 'Harada, T.' 8 'Watanabe, S.' 9 'Guntert, P.' 10 'Yokoyama, S.' 11 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 12 # _citation.id primary _citation.title 'Solution structure of an atypical WW domain in a novel beta-clam-like dimeric form' _citation.journal_abbrev 'Febs Lett.' _citation.journal_volume 581 _citation.page_first 462 _citation.page_last 468 _citation.year 2007 _citation.journal_id_ASTM FEBLAL _citation.country NE _citation.journal_id_ISSN 0014-5793 _citation.journal_id_CSD 0165 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17239860 _citation.pdbx_database_id_DOI 10.1016/j.febslet.2007.01.008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ohnishi, S.' 1 ? primary 'Guntert, P.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Tomizawa, T.' 4 ? primary 'Akasaka, R.' 5 ? primary 'Tochio, N.' 6 ? primary 'Sato, M.' 7 ? primary 'Inoue, M.' 8 ? primary 'Harada, T.' 9 ? primary 'Watanabe, S.' 10 ? primary 'Tanaka, A.' 11 ? primary 'Shirouzu, M.' 12 ? primary 'Kigawa, T.' 13 ? primary 'Yokoyama, S.' 14 ? # _cell.entry_id 2DWV _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DWV _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Salvador homolog 1 protein' _entity.formula_weight 5301.607 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'the second WW domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name '45 kDa WW domain protein, mWW45' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGPLEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGPLEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGPSSG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier mmi002016694.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 LEU n 1 10 GLU n 1 11 ARG n 1 12 GLU n 1 13 GLY n 1 14 LEU n 1 15 PRO n 1 16 PRO n 1 17 GLY n 1 18 TRP n 1 19 GLU n 1 20 ARG n 1 21 VAL n 1 22 GLU n 1 23 SER n 1 24 SER n 1 25 GLU n 1 26 PHE n 1 27 GLY n 1 28 THR n 1 29 TYR n 1 30 TYR n 1 31 VAL n 1 32 ASP n 1 33 HIS n 1 34 THR n 1 35 ASN n 1 36 LYS n 1 37 ARG n 1 38 ALA n 1 39 GLN n 1 40 TYR n 1 41 ARG n 1 42 HIS n 1 43 PRO n 1 44 SER n 1 45 GLY n 1 46 PRO n 1 47 SER n 1 48 SER n 1 49 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'Sav1, Ww45, Wwp3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P051121-01 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SAV1_MOUSE _struct_ref.pdbx_db_accession Q8VEB2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code PLEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHP _struct_ref.pdbx_align_begin 231 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2DWV A 8 ? 43 ? Q8VEB2 231 ? 266 ? 8 43 2 1 2DWV B 8 ? 43 ? Q8VEB2 231 ? 266 ? 8 43 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DWV GLY A 1 ? UNP Q8VEB2 ? ? 'cloning artifact' 1 1 1 2DWV SER A 2 ? UNP Q8VEB2 ? ? 'cloning artifact' 2 2 1 2DWV SER A 3 ? UNP Q8VEB2 ? ? 'cloning artifact' 3 3 1 2DWV GLY A 4 ? UNP Q8VEB2 ? ? 'cloning artifact' 4 4 1 2DWV SER A 5 ? UNP Q8VEB2 ? ? 'cloning artifact' 5 5 1 2DWV SER A 6 ? UNP Q8VEB2 ? ? 'cloning artifact' 6 6 1 2DWV GLY A 7 ? UNP Q8VEB2 ? ? 'cloning artifact' 7 7 1 2DWV SER A 44 ? UNP Q8VEB2 ? ? 'cloning artifact' 44 8 1 2DWV GLY A 45 ? UNP Q8VEB2 ? ? 'cloning artifact' 45 9 1 2DWV PRO A 46 ? UNP Q8VEB2 ? ? 'cloning artifact' 46 10 1 2DWV SER A 47 ? UNP Q8VEB2 ? ? 'cloning artifact' 47 11 1 2DWV SER A 48 ? UNP Q8VEB2 ? ? 'cloning artifact' 48 12 1 2DWV GLY A 49 ? UNP Q8VEB2 ? ? 'cloning artifact' 49 13 2 2DWV GLY B 1 ? UNP Q8VEB2 ? ? 'cloning artifact' 1 14 2 2DWV SER B 2 ? UNP Q8VEB2 ? ? 'cloning artifact' 2 15 2 2DWV SER B 3 ? UNP Q8VEB2 ? ? 'cloning artifact' 3 16 2 2DWV GLY B 4 ? UNP Q8VEB2 ? ? 'cloning artifact' 4 17 2 2DWV SER B 5 ? UNP Q8VEB2 ? ? 'cloning artifact' 5 18 2 2DWV SER B 6 ? UNP Q8VEB2 ? ? 'cloning artifact' 6 19 2 2DWV GLY B 7 ? UNP Q8VEB2 ? ? 'cloning artifact' 7 20 2 2DWV SER B 44 ? UNP Q8VEB2 ? ? 'cloning artifact' 44 21 2 2DWV GLY B 45 ? UNP Q8VEB2 ? ? 'cloning artifact' 45 22 2 2DWV PRO B 46 ? UNP Q8VEB2 ? ? 'cloning artifact' 46 23 2 2DWV SER B 47 ? UNP Q8VEB2 ? ? 'cloning artifact' 47 24 2 2DWV SER B 48 ? UNP Q8VEB2 ? ? 'cloning artifact' 48 25 2 2DWV GLY B 49 ? UNP Q8VEB2 ? ? 'cloning artifact' 49 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.2mM protein U-15N,13C; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O, 90% H2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DWV _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DWV _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DWV _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.935 'Kobayashi, N.' 4 'structure solution' CYANA 2.2 'Guntert, P.' 5 refinement CYANA 2.2 'Guntert, P. et al.' 6 # _exptl.entry_id 2DWV _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DWV _struct.title 'Solution structure of the second WW domain from mouse salvador homolog 1 protein (mWW45)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DWV _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text ;WW domain, dimer, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, PROTEIN BINDING ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 18 ? SER A 23 ? TRP A 18 SER A 23 A 2 GLY A 27 ? ASP A 32 ? GLY A 27 ASP A 32 A 3 ARG A 37 ? GLN A 39 ? ARG A 37 GLN A 39 B 1 TRP B 18 ? GLU B 22 ? TRP B 18 GLU B 22 B 2 THR B 28 ? ASP B 32 ? THR B 28 ASP B 32 B 3 ARG B 37 ? GLN B 39 ? ARG B 37 GLN B 39 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 21 ? N VAL A 21 O TYR A 29 ? O TYR A 29 A 2 3 N ASP A 32 ? N ASP A 32 O ARG A 37 ? O ARG A 37 B 1 2 N VAL B 21 ? N VAL B 21 O TYR B 29 ? O TYR B 29 B 2 3 N TYR B 30 ? N TYR B 30 O GLN B 39 ? O GLN B 39 # _database_PDB_matrix.entry_id 2DWV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DWV _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 TRP 18 18 18 TRP TRP A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 PHE 26 26 26 PHE PHE A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 TYR 30 30 30 TYR TYR A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 HIS 33 33 33 HIS HIS A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 HIS 42 42 42 HIS HIS A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 GLY 49 49 49 GLY GLY A . n B 1 1 GLY 1 1 1 GLY GLY B . n B 1 2 SER 2 2 2 SER SER B . n B 1 3 SER 3 3 3 SER SER B . n B 1 4 GLY 4 4 4 GLY GLY B . n B 1 5 SER 5 5 5 SER SER B . n B 1 6 SER 6 6 6 SER SER B . n B 1 7 GLY 7 7 7 GLY GLY B . n B 1 8 PRO 8 8 8 PRO PRO B . n B 1 9 LEU 9 9 9 LEU LEU B . n B 1 10 GLU 10 10 10 GLU GLU B . n B 1 11 ARG 11 11 11 ARG ARG B . n B 1 12 GLU 12 12 12 GLU GLU B . n B 1 13 GLY 13 13 13 GLY GLY B . n B 1 14 LEU 14 14 14 LEU LEU B . n B 1 15 PRO 15 15 15 PRO PRO B . n B 1 16 PRO 16 16 16 PRO PRO B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 TRP 18 18 18 TRP TRP B . n B 1 19 GLU 19 19 19 GLU GLU B . n B 1 20 ARG 20 20 20 ARG ARG B . n B 1 21 VAL 21 21 21 VAL VAL B . n B 1 22 GLU 22 22 22 GLU GLU B . n B 1 23 SER 23 23 23 SER SER B . n B 1 24 SER 24 24 24 SER SER B . n B 1 25 GLU 25 25 25 GLU GLU B . n B 1 26 PHE 26 26 26 PHE PHE B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 THR 28 28 28 THR THR B . n B 1 29 TYR 29 29 29 TYR TYR B . n B 1 30 TYR 30 30 30 TYR TYR B . n B 1 31 VAL 31 31 31 VAL VAL B . n B 1 32 ASP 32 32 32 ASP ASP B . n B 1 33 HIS 33 33 33 HIS HIS B . n B 1 34 THR 34 34 34 THR THR B . n B 1 35 ASN 35 35 35 ASN ASN B . n B 1 36 LYS 36 36 36 LYS LYS B . n B 1 37 ARG 37 37 37 ARG ARG B . n B 1 38 ALA 38 38 38 ALA ALA B . n B 1 39 GLN 39 39 39 GLN GLN B . n B 1 40 TYR 40 40 40 TYR TYR B . n B 1 41 ARG 41 41 41 ARG ARG B . n B 1 42 HIS 42 42 42 HIS HIS B . n B 1 43 PRO 43 43 43 PRO PRO B . n B 1 44 SER 44 44 44 SER SER B . n B 1 45 GLY 45 45 45 GLY GLY B . n B 1 46 PRO 46 46 46 PRO PRO B . n B 1 47 SER 47 47 47 SER SER B . n B 1 48 SER 48 48 48 SER SER B . n B 1 49 GLY 49 49 49 GLY GLY B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-02-17 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 6 HG A SER 23 ? ? OE2 B GLU 19 ? ? 1.56 2 7 HG A SER 23 ? ? OE2 B GLU 19 ? ? 1.60 3 11 OE2 A GLU 19 ? ? HG B SER 23 ? ? 1.56 4 13 OE2 A GLU 19 ? ? HG B SER 23 ? ? 1.59 5 14 HG A SER 23 ? ? OE2 B GLU 19 ? ? 1.58 6 15 OD1 B ASP 32 ? ? HG1 B THR 34 ? ? 1.57 7 16 HG B SER 6 ? ? O B GLY 49 ? ? 1.57 8 17 OE2 A GLU 19 ? ? HG B SER 23 ? ? 1.59 9 18 HG A SER 23 ? ? OE2 B GLU 19 ? ? 1.59 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 10 NE B ARG 37 ? ? CZ B ARG 37 ? ? NH2 B ARG 37 ? ? 117.20 120.30 -3.10 0.50 N 2 11 CB B TYR 40 ? ? CG B TYR 40 ? ? CD2 B TYR 40 ? ? 117.15 121.00 -3.85 0.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 11 ? ? 80.64 -21.15 2 1 ARG B 11 ? ? 71.48 -2.50 3 1 SER B 24 ? ? -130.32 -38.29 4 2 SER A 6 ? ? 155.54 -168.63 5 2 GLU B 12 ? ? -54.08 -3.18 6 2 SER B 23 ? ? -150.93 -154.51 7 2 SER B 24 ? ? -127.31 -55.58 8 3 SER A 6 ? ? -37.96 109.15 9 3 PRO B 16 ? ? -68.62 99.21 10 3 SER B 44 ? ? -114.12 -89.80 11 4 SER A 44 ? ? -116.58 54.15 12 4 SER A 48 ? ? -154.73 -45.83 13 4 PRO B 16 ? ? -69.86 91.05 14 4 SER B 48 ? ? -145.73 -81.53 15 5 SER A 6 ? ? -164.31 -163.82 16 5 ARG A 11 ? ? -144.33 21.32 17 5 PHE A 26 ? ? -134.59 -63.41 18 5 SER B 48 ? ? -134.31 -63.56 19 6 SER A 3 ? ? -77.51 31.45 20 6 PRO A 43 ? ? -73.36 -168.30 21 6 PRO A 46 ? ? -78.22 -155.01 22 6 SER B 3 ? ? -69.72 98.43 23 7 PRO A 8 ? ? -58.07 -74.82 24 7 SER A 44 ? ? -80.05 -73.72 25 7 SER A 47 ? ? -99.59 -96.93 26 7 ASN B 35 ? ? -143.58 -12.30 27 7 LYS B 36 ? ? 65.07 60.42 28 7 SER B 47 ? ? -110.92 -109.65 29 8 SER A 5 ? ? -77.02 -168.99 30 8 LEU A 9 ? ? -169.07 -166.97 31 8 PHE A 26 ? ? -121.82 -61.35 32 8 SER A 48 ? ? -159.24 -17.04 33 8 SER B 3 ? ? -128.62 -169.14 34 8 SER B 6 ? ? -67.84 -178.43 35 8 PHE B 26 ? ? -134.99 -53.16 36 8 SER B 48 ? ? -143.91 12.48 37 9 SER A 2 ? ? -60.53 11.82 38 9 SER A 6 ? ? -152.48 -63.07 39 9 ARG A 11 ? ? -144.50 54.47 40 9 SER B 2 ? ? -59.94 0.86 41 9 GLU B 12 ? ? -59.91 171.37 42 9 SER B 48 ? ? -56.92 -9.85 43 10 SER A 3 ? ? -144.24 -8.65 44 10 PRO A 43 ? ? -63.95 -75.08 45 10 LEU B 9 ? ? 167.40 -172.67 46 10 PRO B 43 ? ? -59.85 -73.45 47 11 PRO A 8 ? ? -66.74 -75.52 48 11 SER A 44 ? ? -134.36 -47.45 49 11 SER B 5 ? ? -65.13 88.49 50 11 SER B 44 ? ? -130.42 -66.32 51 12 ARG A 11 ? ? -138.61 -32.01 52 12 PHE A 26 ? ? -96.50 -69.65 53 12 PRO A 43 ? ? -70.06 24.32 54 12 SER B 5 ? ? -176.17 144.45 55 12 PRO B 16 ? ? -67.18 93.34 56 12 PRO B 43 ? ? -75.44 45.49 57 14 GLU A 10 ? ? -73.79 31.95 58 15 PRO A 43 ? ? -70.20 -169.09 59 15 SER B 3 ? ? 54.20 80.98 60 15 LEU B 9 ? ? -176.85 134.32 61 15 ARG B 11 ? ? -140.44 15.56 62 15 PRO B 43 ? ? -70.43 -158.58 63 15 SER B 44 ? ? -132.18 -58.12 64 16 PHE A 26 ? ? -132.96 -30.72 65 16 PRO A 43 ? ? -64.21 99.45 66 16 PRO A 46 ? ? -76.94 39.20 67 17 SER A 48 ? ? -150.32 -82.68 68 17 SER B 2 ? ? -128.90 -147.14 69 17 SER B 3 ? ? -4.96 101.08 70 17 LEU B 9 ? ? -142.49 -159.46 71 17 SER B 44 ? ? -63.69 -77.45 72 17 SER B 48 ? ? -148.78 -36.36 73 18 GLU A 10 ? ? -166.64 56.80 74 18 ARG A 11 ? ? 51.85 7.13 75 18 GLU A 12 ? ? -66.76 5.56 76 18 LEU A 14 ? ? -48.81 154.62 77 18 SER A 44 ? ? -126.92 -79.10 78 18 SER A 47 ? ? 178.82 166.61 79 18 SER A 48 ? ? -129.66 -53.66 80 18 GLU B 10 ? ? -160.45 35.11 81 18 GLU B 12 ? ? -94.38 37.29 82 18 PHE B 26 ? ? -122.46 -53.65 83 18 SER B 48 ? ? -141.22 -78.04 84 19 SER A 44 ? ? -89.73 -74.76 85 19 PRO B 8 ? ? -74.88 -72.62 86 19 SER B 44 ? ? -78.75 -84.92 87 20 PRO A 43 ? ? -70.96 44.84 88 20 PRO B 8 ? ? -78.74 -71.52 89 20 PRO B 43 ? ? -84.82 42.19 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 2 TYR A 29 ? ? 0.078 'SIDE CHAIN' 2 3 ARG A 20 ? ? 0.097 'SIDE CHAIN' 3 3 TYR A 40 ? ? 0.083 'SIDE CHAIN' 4 3 ARG B 37 ? ? 0.079 'SIDE CHAIN' 5 4 TYR B 40 ? ? 0.084 'SIDE CHAIN' 6 8 ARG B 20 ? ? 0.101 'SIDE CHAIN' 7 8 TYR B 40 ? ? 0.077 'SIDE CHAIN' 8 9 TYR A 40 ? ? 0.095 'SIDE CHAIN' 9 9 TYR B 40 ? ? 0.079 'SIDE CHAIN' 10 10 TYR A 40 ? ? 0.077 'SIDE CHAIN' 11 10 TYR B 40 ? ? 0.068 'SIDE CHAIN' 12 11 TYR A 40 ? ? 0.094 'SIDE CHAIN' 13 12 TYR A 30 ? ? 0.080 'SIDE CHAIN' 14 12 TYR A 40 ? ? 0.094 'SIDE CHAIN' 15 13 TYR A 40 ? ? 0.073 'SIDE CHAIN' 16 14 ARG A 20 ? ? 0.137 'SIDE CHAIN' 17 14 ARG A 41 ? ? 0.076 'SIDE CHAIN' 18 14 ARG B 20 ? ? 0.087 'SIDE CHAIN' 19 16 TYR A 40 ? ? 0.081 'SIDE CHAIN' 20 16 ARG B 37 ? ? 0.089 'SIDE CHAIN' 21 16 TYR B 40 ? ? 0.082 'SIDE CHAIN' 22 18 ARG B 20 ? ? 0.099 'SIDE CHAIN' 23 18 TYR B 29 ? ? 0.066 'SIDE CHAIN' 24 18 ARG B 41 ? ? 0.098 'SIDE CHAIN' 25 19 ARG B 37 ? ? 0.082 'SIDE CHAIN' #