data_2DYW # _entry.id 2DYW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DYW pdb_00002dyw 10.2210/pdb2dyw/pdb NDB DD0086 ? ? RCSB RCSB026014 ? ? WWPDB D_1000026014 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DYW _pdbx_database_status.recvd_initial_deposition_date 2006-09-18 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Komeda, S.' 1 'Moulaei, T.' 2 'Woods, K.K.' 3 'Chikuma, M.' 4 'Farrell, N.P.' 5 'Williams, L.D.' 6 # _citation.id primary _citation.title 'A Third Mode of DNA Binding: Phosphate Clamps by a Polynuclear Platinum Complex' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 128 _citation.page_first 16092 _citation.page_last 16103 _citation.year 2006 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17165762 _citation.pdbx_database_id_DOI 10.1021/ja062851y # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Komeda, S.' 1 ? primary 'Moulaei, T.' 2 ? primary 'Woods, K.K.' 3 ? primary 'Chikuma, M.' 4 ? primary 'Farrell, N.P.' 5 ? primary 'Williams, L.D.' 6 ? # _cell.entry_id 2DYW _cell.length_a 23.675 _cell.length_b 41.692 _cell.length_c 65.651 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2DYW _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'" 3663.392 2 ? ? ? ? 2 non-polymer syn '(6-AMINOHEXYLAMINE)(TRIAMMINE) PLATINUM(II) COMPLEX' 362.374 3 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 'TRANS-BIS(HEXYLAMINE)-(DIAMMINE) PLATINUM(II) COMPLEX' 431.519 1 ? ? ? ? 5 water nat water 18.015 125 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2DYW _struct_ref.pdbx_db_accession 2DYW _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2DYW A 1 ? 12 ? 2DYW 1 ? 12 ? 1 12 2 1 2DYW B 1 ? 12 ? 2DYW 1 ? 12 ? 1 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A71 non-polymer . '(6-AMINOHEXYLAMINE)(TRIAMMINE) PLATINUM(II) COMPLEX' ? 'C6 H25 N5 Pt' 362.374 A72 non-polymer . 'TRANS-BIS(HEXYLAMINE)-(DIAMMINE) PLATINUM(II) COMPLEX' ? 'C12 H36 N4 Pt' 431.519 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # _exptl.entry_id 2DYW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_percent_sol 41.94 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;0.19mM [d(CGCGAATTCGCG)]2, 0.19mM TriplatinNC, 31mM sodium cacodylate (pH 6.5), 9.6mM magnesium chloride, 6.9% 2-methyl-2,4-pentanediol (MPD), equilibrated against a reservoir of 30% MPD, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 TriplatinNC ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 'magnesium chloride' ? ? ? 1 4 1 MPD ? ? ? 1 5 1 H2O ? ? ? 1 6 2 'sodium cacodylate' ? ? ? 1 7 2 'magnesium chloride' ? ? ? 1 8 2 MPD ? ? ? 1 9 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 175 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-11-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.05 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X26C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X26C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.05 # _reflns.entry_id 2DYW _reflns.observed_criterion_sigma_F 1.0 _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.07 _reflns.d_resolution_low 50 _reflns.number_all 23727 _reflns.number_obs 21375 _reflns.percent_possible_obs 90.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12.5 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2DYW _refine.ls_number_reflns_obs 18995 _refine.ls_number_reflns_all 20317 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 5.50 _refine.ls_d_res_high 1.13 _refine.ls_percent_reflns_obs 81.9 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all 0.1879 _refine.ls_R_factor_R_work 0.1818 _refine.ls_R_factor_R_free 0.2321 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 2112 _refine.ls_number_parameters 5106 _refine.ls_number_restraints 5941 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details 'ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF)' _refine.pdbx_starting_model '355D(NDB entry: bdl084)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model 'anisotropic: DNA and NO5, isotropic: AH78, AH79 and solvent' _refine.pdbx_stereochemistry_target_values ;Gelbin, A., Schneider, B., Clowney, L., Hsieh, S.-H., Olson, W.K., and Berman, H.M. (1996). Geometric parameters in nucleic acids: sugar and phosphate constituents. J. Am. Chem. Soc. 118(3), 519-528. ; _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2DYW _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 0.00 _refine_analyze.occupancy_sum_non_hydrogen 647.55 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.number_atoms_solvent 125 _refine_hist.number_atoms_total 661 _refine_hist.d_res_high 1.13 _refine_hist.d_res_low 5.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.022 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0014 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.013 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.004 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.042 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.13 _refine_ls_shell.d_res_low ? _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.1818 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2321 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 2112 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 18995 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine.entry_id 2DYW _pdbx_refine.R_factor_all_no_cutoff 0.1879 _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.1772 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 18136 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 2DYW _struct.title 'A Backbone binding DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DYW _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Platinum, Phosphate Clamp, Anticancer Drug, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 2 ? H N N 5 ? I N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? E A71 . N11 ? ? ? 1_555 F A72 . C12 ? ? B A71 201 B A72 202 1_555 ? ? ? ? ? ? ? 1.512 ? ? covale2 covale none ? F A72 . C27 ? ? ? 1_555 G A71 . N10 ? ? B A72 202 B A71 203 1_555 ? ? ? ? ? ? ? 1.495 ? ? metalc1 metalc ? ? H HOH . O ? ? ? 1_555 D NA . NA ? ? A HOH 3001 B NA 101 1_555 ? ? ? ? ? ? ? 2.426 ? ? metalc2 metalc ? ? H HOH . O ? ? ? 1_555 D NA . NA ? ? A HOH 3002 B NA 101 1_555 ? ? ? ? ? ? ? 2.461 ? ? metalc3 metalc ? ? H HOH . O ? ? ? 1_555 D NA . NA ? ? A HOH 3005 B NA 101 1_555 ? ? ? ? ? ? ? 2.464 ? ? metalc4 metalc ? ? B DG 10 O6 ? ? ? 1_555 D NA . NA ? ? B DG 10 B NA 101 1_555 ? ? ? ? ? ? ? 2.406 ? ? metalc5 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? B NA 101 B HOH 3003 1_555 ? ? ? ? ? ? ? 2.551 ? ? metalc6 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? B NA 101 B HOH 3004 1_555 ? ? ? ? ? ? ? 2.341 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B NA 101 ? 6 'BINDING SITE FOR RESIDUE NA B 101' AC2 Software B A71 201 ? 11 'BINDING SITE FOR RESIDUE A71 B 201' AC3 Software B A72 202 ? 12 'BINDING SITE FOR RESIDUE A72 B 202' AC4 Software B A71 203 ? 8 'BINDING SITE FOR RESIDUE A71 B 203' AC5 Software A A71 301 ? 7 'BINDING SITE FOR RESIDUE A71 A 301' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH H . ? HOH A 3001 . ? 1_555 ? 2 AC1 6 HOH H . ? HOH A 3002 . ? 1_555 ? 3 AC1 6 HOH H . ? HOH A 3005 . ? 1_555 ? 4 AC1 6 DG B 10 ? DG B 10 . ? 1_555 ? 5 AC1 6 HOH I . ? HOH B 3003 . ? 1_555 ? 6 AC1 6 HOH I . ? HOH B 3004 . ? 1_555 ? 7 AC2 11 DC A 11 ? DC A 11 . ? 1_655 ? 8 AC2 11 DG A 12 ? DG A 12 . ? 1_655 ? 9 AC2 11 DG B 2 ? DG B 2 . ? 1_555 ? 10 AC2 11 DC B 3 ? DC B 3 . ? 1_555 ? 11 AC2 11 DC B 9 ? DC B 9 . ? 3_455 ? 12 AC2 11 DG B 12 ? DG B 12 . ? 2_464 ? 13 AC2 11 A72 F . ? A72 B 202 . ? 1_555 ? 14 AC2 11 A71 G . ? A71 B 203 . ? 1_655 ? 15 AC2 11 HOH I . ? HOH B 2006 . ? 1_555 ? 16 AC2 11 HOH I . ? HOH B 2014 . ? 1_555 ? 17 AC2 11 HOH I . ? HOH B 2046 . ? 1_555 ? 18 AC3 12 DC A 1 ? DC A 1 . ? 2_364 ? 19 AC3 12 DA A 6 ? DA A 6 . ? 3_455 ? 20 AC3 12 DT A 7 ? DT A 7 . ? 3_455 ? 21 AC3 12 DC B 3 ? DC B 3 . ? 1_555 ? 22 AC3 12 DG B 4 ? DG B 4 . ? 1_555 ? 23 AC3 12 DT B 8 ? DT B 8 . ? 3_355 ? 24 AC3 12 DC B 9 ? DC B 9 . ? 3_455 ? 25 AC3 12 DG B 10 ? DG B 10 . ? 3_455 ? 26 AC3 12 DG B 12 ? DG B 12 . ? 2_364 ? 27 AC3 12 A71 E . ? A71 B 201 . ? 1_555 ? 28 AC3 12 A71 G . ? A71 B 203 . ? 1_555 ? 29 AC3 12 HOH I . ? HOH B 2073 . ? 2_364 ? 30 AC4 8 DA B 5 ? DA B 5 . ? 1_555 ? 31 AC4 8 DA B 6 ? DA B 6 . ? 1_555 ? 32 AC4 8 DT B 8 ? DT B 8 . ? 3_355 ? 33 AC4 8 DG B 12 ? DG B 12 . ? 2_364 ? 34 AC4 8 A71 E . ? A71 B 201 . ? 1_455 ? 35 AC4 8 A72 F . ? A72 B 202 . ? 1_555 ? 36 AC4 8 HOH I . ? HOH B 2046 . ? 1_455 ? 37 AC4 8 HOH I . ? HOH B 2104 . ? 1_555 ? 38 AC5 7 DC A 3 ? DC A 3 . ? 1_555 ? 39 AC5 7 DG A 4 ? DG A 4 . ? 1_555 ? 40 AC5 7 DG A 12 ? DG A 12 . ? 2_365 ? 41 AC5 7 HOH H . ? HOH A 2027 . ? 2_365 ? 42 AC5 7 HOH H . ? HOH A 2085 . ? 2_365 ? 43 AC5 7 HOH H . ? HOH A 2106 . ? 1_555 ? 44 AC5 7 DC B 1 ? DC B 1 . ? 3_455 ? # _database_PDB_matrix.entry_id 2DYW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 2DYW _atom_sites.fract_transf_matrix[1][1] 0.042239 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023985 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015232 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O P PT # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC CYT A . n A 1 2 DG 2 2 2 DG GUA A . n A 1 3 DC 3 3 3 DC CYT A . n A 1 4 DG 4 4 4 DG GUA A . n A 1 5 DA 5 5 5 DA ADE A . n A 1 6 DA 6 6 6 DA ADE A . n A 1 7 DT 7 7 7 DT THY A . n A 1 8 DT 8 8 8 DT THY A . n A 1 9 DC 9 9 9 DC CYT A . n A 1 10 DG 10 10 10 DG GUA A . n A 1 11 DC 11 11 11 DC CYT A . n A 1 12 DG 12 12 12 DG GUA A . n B 1 1 DC 1 1 1 DC CYT B . n B 1 2 DG 2 2 2 DG GUA B . n B 1 3 DC 3 3 3 DC CYT B . n B 1 4 DG 4 4 4 DG GUA B . n B 1 5 DA 5 5 5 DA ADE B . n B 1 6 DA 6 6 6 DA ADE B . n B 1 7 DT 7 7 7 DT THY B . n B 1 8 DT 8 8 8 DT THY B . n B 1 9 DC 9 9 9 DC CYT B . n B 1 10 DG 10 10 10 DG GUA B . n B 1 11 DC 11 11 11 DC CYT B . n B 1 12 DG 12 12 12 DG GUA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A71 1 301 1 A71 A79 A . D 3 NA 1 101 1 NA NO5 B . E 2 A71 1 201 1 A71 A78 B . F 4 A72 1 202 1 A72 A78 B . G 2 A71 1 203 1 A71 A78 B . H 5 HOH 1 2001 2001 HOH HOH A . H 5 HOH 2 2002 2002 HOH HOH A . H 5 HOH 3 2005 2005 HOH HOH A . H 5 HOH 4 2010 2010 HOH HOH A . H 5 HOH 5 2011 2011 HOH HOH A . H 5 HOH 6 2012 2012 HOH HOH A . H 5 HOH 7 2015 2015 HOH HOH A . H 5 HOH 8 2017 2017 HOH HOH A . H 5 HOH 9 2018 2018 HOH HOH A . H 5 HOH 10 2019 2019 HOH HOH A . H 5 HOH 11 2020 2020 HOH HOH A . H 5 HOH 12 2024 2024 HOH HOH A . H 5 HOH 13 2025 2025 HOH HOH A . H 5 HOH 14 2026 2026 HOH HOH A . H 5 HOH 15 2027 2027 HOH HOH A . H 5 HOH 16 2030 2030 HOH HOH A . H 5 HOH 17 2035 2035 HOH HOH A . H 5 HOH 18 2036 2036 HOH HOH A . H 5 HOH 19 2037 2037 HOH HOH A . H 5 HOH 20 2038 2038 HOH HOH A . H 5 HOH 21 2039 2039 HOH HOH A . H 5 HOH 22 2040 2040 HOH HOH A . H 5 HOH 23 2041 2041 HOH HOH A . H 5 HOH 24 2042 2042 HOH HOH A . H 5 HOH 25 2043 2043 HOH HOH A . H 5 HOH 26 2045 2045 HOH HOH A . H 5 HOH 27 2047 2047 HOH HOH A . H 5 HOH 28 2049 2049 HOH HOH A . H 5 HOH 29 2052 2052 HOH HOH A . H 5 HOH 30 2054 2054 HOH HOH A . H 5 HOH 31 2056 2056 HOH HOH A . H 5 HOH 32 2058 2058 HOH HOH A . H 5 HOH 33 2060 2060 HOH HOH A . H 5 HOH 34 2062 2062 HOH HOH A . H 5 HOH 35 2065 2065 HOH HOH A . H 5 HOH 36 2067 2067 HOH HOH A . H 5 HOH 37 2068 2068 HOH HOH A . H 5 HOH 38 2070 2070 HOH HOH A . H 5 HOH 39 2071 2071 HOH HOH A . H 5 HOH 40 2076 2076 HOH HOH A . H 5 HOH 41 2077 2077 HOH HOH A . H 5 HOH 42 2080 2080 HOH HOH A . H 5 HOH 43 2081 2081 HOH HOH A . H 5 HOH 44 2082 2082 HOH HOH A . H 5 HOH 45 2083 2083 HOH HOH A . H 5 HOH 46 2085 2085 HOH HOH A . H 5 HOH 47 2087 2087 HOH HOH A . H 5 HOH 48 2090 2090 HOH HOH A . H 5 HOH 49 2091 2091 HOH HOH A . H 5 HOH 50 2092 2092 HOH HOH A . H 5 HOH 51 2095 2095 HOH HOH A . H 5 HOH 52 2096 2096 HOH HOH A . H 5 HOH 53 2097 2097 HOH HOH A . H 5 HOH 54 2099 2099 HOH HOH A . H 5 HOH 55 2102 2102 HOH HOH A . H 5 HOH 56 2106 2106 HOH HOH A . H 5 HOH 57 2107 2107 HOH HOH A . H 5 HOH 58 2108 2108 HOH HOH A . H 5 HOH 59 2112 2112 HOH HOH A . H 5 HOH 60 2117 2117 HOH HOH A . H 5 HOH 61 2118 2118 HOH HOH A . H 5 HOH 62 3001 1 HOH NO5 A . H 5 HOH 63 3002 1 HOH NO5 A . H 5 HOH 64 3005 1 HOH NO5 A . I 5 HOH 1 2003 2003 HOH HOH B . I 5 HOH 2 2004 2004 HOH HOH B . I 5 HOH 3 2006 2006 HOH HOH B . I 5 HOH 4 2007 2007 HOH HOH B . I 5 HOH 5 2008 2008 HOH HOH B . I 5 HOH 6 2009 2009 HOH HOH B . I 5 HOH 7 2013 2013 HOH HOH B . I 5 HOH 8 2014 2014 HOH HOH B . I 5 HOH 9 2016 2016 HOH HOH B . I 5 HOH 10 2021 2021 HOH HOH B . I 5 HOH 11 2022 2022 HOH HOH B . I 5 HOH 12 2023 2023 HOH HOH B . I 5 HOH 13 2028 2028 HOH HOH B . I 5 HOH 14 2029 2029 HOH HOH B . I 5 HOH 15 2031 2031 HOH HOH B . I 5 HOH 16 2032 2032 HOH HOH B . I 5 HOH 17 2033 2033 HOH HOH B . I 5 HOH 18 2034 2034 HOH HOH B . I 5 HOH 19 2044 2044 HOH HOH B . I 5 HOH 20 2046 2046 HOH HOH B . I 5 HOH 21 2048 2048 HOH HOH B . I 5 HOH 22 2050 2050 HOH HOH B . I 5 HOH 23 2051 2051 HOH HOH B . I 5 HOH 24 2053 2053 HOH HOH B . I 5 HOH 25 2055 2055 HOH HOH B . I 5 HOH 26 2057 2057 HOH HOH B . I 5 HOH 27 2059 2059 HOH HOH B . I 5 HOH 28 2061 2061 HOH HOH B . I 5 HOH 29 2063 2063 HOH HOH B . I 5 HOH 30 2064 2064 HOH HOH B . I 5 HOH 31 2066 2066 HOH HOH B . I 5 HOH 32 2069 2069 HOH HOH B . I 5 HOH 33 2072 2072 HOH HOH B . I 5 HOH 34 2073 2073 HOH HOH B . I 5 HOH 35 2074 2074 HOH HOH B . I 5 HOH 36 2075 2075 HOH HOH B . I 5 HOH 37 2078 2078 HOH HOH B . I 5 HOH 38 2079 2079 HOH HOH B . I 5 HOH 39 2084 2084 HOH HOH B . I 5 HOH 40 2086 2086 HOH HOH B . I 5 HOH 41 2088 2088 HOH HOH B . I 5 HOH 42 2089 2089 HOH HOH B . I 5 HOH 43 2093 2093 HOH HOH B . I 5 HOH 44 2094 2094 HOH HOH B . I 5 HOH 45 2098 2098 HOH HOH B . I 5 HOH 46 2100 2100 HOH HOH B . I 5 HOH 47 2101 2101 HOH HOH B . I 5 HOH 48 2103 2103 HOH HOH B . I 5 HOH 49 2104 2104 HOH HOH B . I 5 HOH 50 2105 2105 HOH HOH B . I 5 HOH 51 2109 2109 HOH HOH B . I 5 HOH 52 2110 2110 HOH HOH B . I 5 HOH 53 2111 2111 HOH HOH B . I 5 HOH 54 2113 2113 HOH HOH B . I 5 HOH 55 2114 2114 HOH HOH B . I 5 HOH 56 2115 2115 HOH HOH B . I 5 HOH 57 2116 2116 HOH HOH B . I 5 HOH 58 2119 2119 HOH HOH B . I 5 HOH 59 2120 2120 HOH HOH B . I 5 HOH 60 3003 1 HOH NO5 B . I 5 HOH 61 3004 1 HOH NO5 B . # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'OUTSIDE BINDER' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? H HOH . ? A HOH 3001 ? 1_555 NA ? D NA . ? B NA 101 ? 1_555 O ? H HOH . ? A HOH 3002 ? 1_555 78.1 ? 2 O ? H HOH . ? A HOH 3001 ? 1_555 NA ? D NA . ? B NA 101 ? 1_555 O ? H HOH . ? A HOH 3005 ? 1_555 90.7 ? 3 O ? H HOH . ? A HOH 3002 ? 1_555 NA ? D NA . ? B NA 101 ? 1_555 O ? H HOH . ? A HOH 3005 ? 1_555 79.8 ? 4 O ? H HOH . ? A HOH 3001 ? 1_555 NA ? D NA . ? B NA 101 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 92.8 ? 5 O ? H HOH . ? A HOH 3002 ? 1_555 NA ? D NA . ? B NA 101 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 98.3 ? 6 O ? H HOH . ? A HOH 3005 ? 1_555 NA ? D NA . ? B NA 101 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 175.6 ? 7 O ? H HOH . ? A HOH 3001 ? 1_555 NA ? D NA . ? B NA 101 ? 1_555 O ? I HOH . ? B HOH 3003 ? 1_555 170.6 ? 8 O ? H HOH . ? A HOH 3002 ? 1_555 NA ? D NA . ? B NA 101 ? 1_555 O ? I HOH . ? B HOH 3003 ? 1_555 92.9 ? 9 O ? H HOH . ? A HOH 3005 ? 1_555 NA ? D NA . ? B NA 101 ? 1_555 O ? I HOH . ? B HOH 3003 ? 1_555 90.6 ? 10 O6 ? B DG 10 ? B DG 10 ? 1_555 NA ? D NA . ? B NA 101 ? 1_555 O ? I HOH . ? B HOH 3003 ? 1_555 85.5 ? 11 O ? H HOH . ? A HOH 3001 ? 1_555 NA ? D NA . ? B NA 101 ? 1_555 O ? I HOH . ? B HOH 3004 ? 1_555 93.2 ? 12 O ? H HOH . ? A HOH 3002 ? 1_555 NA ? D NA . ? B NA 101 ? 1_555 O ? I HOH . ? B HOH 3004 ? 1_555 166.9 ? 13 O ? H HOH . ? A HOH 3005 ? 1_555 NA ? D NA . ? B NA 101 ? 1_555 O ? I HOH . ? B HOH 3004 ? 1_555 90.6 ? 14 O6 ? B DG 10 ? B DG 10 ? 1_555 NA ? D NA . ? B NA 101 ? 1_555 O ? I HOH . ? B HOH 3004 ? 1_555 91.9 ? 15 O ? I HOH . ? B HOH 3003 ? 1_555 NA ? D NA . ? B NA 101 ? 1_555 O ? I HOH . ? B HOH 3004 ? 1_555 96.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-01-02 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.pdbx_dist_value' 19 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 35 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 36 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELX 'model building' . ? 1 SHELXL-97 refinement . ? 2 CBASS 'data collection' . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 CNS phasing . ? 6 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "C2'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 2 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.454 _pdbx_validate_rmsd_bond.bond_target_value 1.518 _pdbx_validate_rmsd_bond.bond_deviation -0.064 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.010 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 116.41 108.30 8.11 0.30 N 2 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 125.15 121.90 3.25 0.40 N 3 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 101.43 104.50 -3.07 0.40 N 4 1 "C1'" A DG 2 ? ? "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 101.26 110.10 -8.84 1.00 N 5 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 87.62 102.40 -14.78 0.80 N 6 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 120.67 106.80 13.87 0.50 N 7 1 N9 A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 129.72 114.30 15.42 1.40 N 8 1 N3 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 125.59 128.60 -3.01 0.50 N 9 1 N3 A DG 2 ? ? C4 A DG 2 ? ? N9 A DG 2 ? ? 130.32 126.00 4.32 0.60 N 10 1 C6 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 126.20 130.40 -4.20 0.60 N 11 1 "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? 100.44 109.40 -8.96 0.80 N 12 1 "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? 100.66 104.50 -3.84 0.40 N 13 1 "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? 112.63 103.10 9.53 0.90 N 14 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? "C2'" A DC 3 ? ? 112.10 106.80 5.30 0.50 N 15 1 N1 A DC 3 ? ? "C1'" A DC 3 ? ? "C2'" A DC 3 ? ? 125.17 114.30 10.87 1.40 N 16 1 "C3'" A DC 3 ? ? "O3'" A DC 3 ? ? P A DG 4 ? ? 128.19 119.70 8.49 1.20 Y 17 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 101.94 104.50 -2.56 0.40 N 18 1 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 109.66 103.10 6.56 0.90 N 19 1 "O5'" A DA 5 ? ? "C5'" A DA 5 ? ? "C4'" A DA 5 ? ? 102.23 109.40 -7.17 0.80 N 20 1 P A DA 5 ? ? "O5'" A DA 5 ? ? "C5'" A DA 5 ? ? 111.03 120.90 -9.87 1.60 N 21 1 "O4'" A DA 5 ? ? "C4'" A DA 5 ? ? "C3'" A DA 5 ? ? 86.20 104.50 -18.30 0.40 N 22 1 "C5'" A DA 5 ? ? "C4'" A DA 5 ? ? "C3'" A DA 5 ? ? 137.73 115.70 22.03 1.20 N 23 1 "C1'" A DA 5 ? ? "O4'" A DA 5 ? ? "C4'" A DA 5 ? ? 122.85 110.30 12.55 0.70 N 24 1 "C4'" A DA 5 ? ? "C3'" A DA 5 ? ? "C2'" A DA 5 ? ? 118.88 103.10 15.78 0.90 N 25 1 "C3'" A DA 5 ? ? "C2'" A DA 5 ? ? "C1'" A DA 5 ? ? 89.73 102.40 -12.67 0.80 N 26 1 "O3'" A DA 5 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 124.15 110.50 13.65 1.10 Y 27 1 "O3'" A DA 5 ? ? P A DA 6 ? ? OP1 A DA 6 ? ? 92.00 105.20 -13.20 2.20 Y 28 1 "O5'" A DA 6 ? ? P A DA 6 ? ? OP1 A DA 6 ? ? 94.25 105.70 -11.45 0.90 N 29 1 "O4'" A DA 6 ? ? "C4'" A DA 6 ? ? "C3'" A DA 6 ? ? 98.90 104.50 -5.60 0.40 N 30 1 "C1'" A DA 6 ? ? "O4'" A DA 6 ? ? "C4'" A DA 6 ? ? 114.55 110.30 4.25 0.70 N 31 1 "C4'" A DA 6 ? ? "C3'" A DA 6 ? ? "C2'" A DA 6 ? ? 111.46 103.10 8.36 0.90 N 32 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 102.85 108.00 -5.15 0.70 N 33 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 122.43 118.60 3.83 0.60 N 34 1 "O4'" A DT 7 ? ? "C4'" A DT 7 ? ? "C3'" A DT 7 ? ? 101.68 104.50 -2.82 0.40 N 35 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? "C2'" A DT 7 ? ? 100.02 105.90 -5.88 0.80 N 36 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 103.54 108.00 -4.46 0.70 N 37 1 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 117.43 122.30 -4.87 0.60 N 38 1 N1 A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 124.49 114.30 10.19 1.40 N 39 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 102.54 108.00 -5.46 0.70 N 40 1 N3 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 117.97 122.30 -4.33 0.60 N 41 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DC 9 ? ? 127.86 119.70 8.16 1.20 Y 42 1 "O3'" A DT 8 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 117.26 110.50 6.76 1.10 Y 43 1 OP1 A DC 9 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 110.45 119.60 -9.15 1.50 N 44 1 "O5'" A DC 9 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 98.96 105.70 -6.74 0.90 N 45 1 "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? 94.76 104.50 -9.74 0.40 N 46 1 "C5'" A DC 9 ? ? "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? 102.72 114.10 -11.38 1.80 N 47 1 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 115.34 110.30 5.04 0.70 N 48 1 "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? "C2'" A DC 9 ? ? 120.32 103.10 17.22 0.90 N 49 1 "C3'" A DC 9 ? ? "C2'" A DC 9 ? ? "C1'" A DC 9 ? ? 94.40 102.40 -8.00 0.80 N 50 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? "C2'" A DC 9 ? ? 110.78 106.80 3.98 0.50 N 51 1 N1 A DC 9 ? ? "C1'" A DC 9 ? ? "C2'" A DC 9 ? ? 130.28 114.30 15.98 1.40 N 52 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 98.85 108.00 -9.15 0.70 N 53 1 "C3'" A DC 9 ? ? "O3'" A DC 9 ? ? P A DG 10 ? ? 128.20 119.70 8.50 1.20 Y 54 1 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 95.67 102.40 -6.73 0.80 N 55 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 103.74 108.00 -4.26 0.70 N 56 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 102.84 108.00 -5.16 0.70 N 57 1 "O4'" A DG 12 ? ? "C4'" A DG 12 ? ? "C3'" A DG 12 ? ? 101.33 104.50 -3.17 0.40 N 58 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 103.64 108.00 -4.36 0.70 N 59 1 "C5'" B DC 1 ? ? "C4'" B DC 1 ? ? "O4'" B DC 1 ? ? 95.44 109.30 -13.86 1.90 N 60 1 N1 B DC 1 ? ? "C1'" B DC 1 ? ? "C2'" B DC 1 ? ? 129.47 114.30 15.17 1.40 N 61 1 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 102.01 108.00 -5.99 0.70 N 62 1 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? "C2'" B DC 3 ? ? 112.30 106.80 5.50 0.50 N 63 1 N1 B DC 3 ? ? "C1'" B DC 3 ? ? "C2'" B DC 3 ? ? 125.67 114.30 11.37 1.40 N 64 1 C6 B DC 3 ? ? N1 B DC 3 ? ? C2 B DC 3 ? ? 123.05 120.30 2.75 0.40 N 65 1 N1 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 122.55 118.90 3.65 0.60 N 66 1 "C3'" B DG 4 ? ? "C2'" B DG 4 ? ? "C1'" B DG 4 ? ? 96.12 102.40 -6.28 0.80 N 67 1 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? "C2'" B DG 4 ? ? 112.37 106.80 5.57 0.50 N 68 1 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 114.14 108.30 5.84 0.30 N 69 1 N1 B DG 4 ? ? C2 B DG 4 ? ? N3 B DG 4 ? ? 120.21 123.90 -3.69 0.60 N 70 1 "O4'" B DA 5 ? ? "C4'" B DA 5 ? ? "C3'" B DA 5 ? ? 99.41 104.50 -5.09 0.40 N 71 1 "C1'" B DA 5 ? ? "O4'" B DA 5 ? ? "C4'" B DA 5 ? ? 116.53 110.30 6.23 0.70 N 72 1 "C4'" B DA 5 ? ? "C3'" B DA 5 ? ? "C2'" B DA 5 ? ? 109.98 103.10 6.88 0.90 N 73 1 N9 B DA 6 ? ? "C1'" B DA 6 ? ? "C2'" B DA 6 ? ? 123.48 114.30 9.18 1.40 N 74 1 "O4'" B DA 6 ? ? "C1'" B DA 6 ? ? N9 B DA 6 ? ? 103.18 108.00 -4.82 0.70 N 75 1 "C3'" B DA 6 ? ? "O3'" B DA 6 ? ? P B DT 7 ? ? 129.01 119.70 9.31 1.20 Y 76 1 "O5'" B DT 7 ? ? "C5'" B DT 7 ? ? "C4'" B DT 7 ? ? 100.71 109.40 -8.69 0.80 N 77 1 "O4'" B DT 7 ? ? "C4'" B DT 7 ? ? "C3'" B DT 7 ? ? 111.64 106.00 5.64 0.60 N 78 1 "C5'" B DT 7 ? ? "C4'" B DT 7 ? ? "O4'" B DT 7 ? ? 118.27 109.80 8.47 1.10 N 79 1 "C1'" B DT 7 ? ? "O4'" B DT 7 ? ? "C4'" B DT 7 ? ? 103.83 110.10 -6.27 1.00 N 80 1 N1 B DT 7 ? ? "C1'" B DT 7 ? ? "C2'" B DT 7 ? ? 125.51 114.30 11.21 1.40 N 81 1 "O4'" B DT 7 ? ? "C1'" B DT 7 ? ? N1 B DT 7 ? ? 100.40 108.00 -7.60 0.70 N 82 1 "C3'" B DT 7 ? ? "O3'" B DT 7 ? ? P B DT 8 ? ? 111.52 119.70 -8.18 1.20 Y 83 1 "O5'" B DT 8 ? ? "C5'" B DT 8 ? ? "C4'" B DT 8 ? ? 100.40 109.40 -9.00 0.80 N 84 1 N1 B DT 8 ? ? "C1'" B DT 8 ? ? "C2'" B DT 8 ? ? 123.54 114.30 9.24 1.40 N 85 1 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 102.79 108.00 -5.21 0.70 N 86 1 N3 B DT 8 ? ? C4 B DT 8 ? ? O4 B DT 8 ? ? 115.45 119.90 -4.45 0.60 N 87 1 C5 B DT 8 ? ? C4 B DT 8 ? ? O4 B DT 8 ? ? 129.24 124.90 4.34 0.70 N 88 1 "C4'" B DC 9 ? ? "C3'" B DC 9 ? ? "C2'" B DC 9 ? ? 109.24 103.10 6.14 0.90 N 89 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? "C2'" B DC 9 ? ? 114.22 106.80 7.42 0.50 N 90 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1 B DC 9 ? ? 98.44 108.00 -9.56 0.70 N 91 1 "C1'" B DG 10 ? ? "O4'" B DG 10 ? ? "C4'" B DG 10 ? ? 103.96 110.10 -6.14 1.00 N 92 1 "C3'" B DG 10 ? ? "C2'" B DG 10 ? ? "C1'" B DG 10 ? ? 96.80 102.40 -5.60 0.80 N 93 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 112.62 108.30 4.32 0.30 N 94 1 C6 B DG 10 ? ? N1 B DG 10 ? ? C2 B DG 10 ? ? 130.99 125.10 5.89 0.60 N 95 1 C5 B DG 10 ? ? C6 B DG 10 ? ? N1 B DG 10 ? ? 106.57 111.50 -4.93 0.50 N 96 1 N3 B DG 10 ? ? C4 B DG 10 ? ? N9 B DG 10 ? ? 121.95 126.00 -4.05 0.60 N 97 1 "O5'" B DC 11 ? ? P B DC 11 ? ? OP2 B DC 11 ? ? 118.56 110.70 7.86 1.20 N 98 1 P B DC 11 ? ? "O5'" B DC 11 ? ? "C5'" B DC 11 ? ? 136.40 120.90 15.50 1.60 N 99 1 "O4'" B DC 11 ? ? "C4'" B DC 11 ? ? "C3'" B DC 11 ? ? 100.88 104.50 -3.62 0.40 N 100 1 "C4'" B DC 11 ? ? "C3'" B DC 11 ? ? "C2'" B DC 11 ? ? 111.99 103.10 8.89 0.90 N 101 1 "O5'" B DG 12 ? ? "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? 103.48 109.40 -5.92 0.80 N 102 1 "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 123.16 115.70 7.46 1.20 N 103 1 "C1'" B DG 12 ? ? "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? 103.94 110.10 -6.16 1.00 N 104 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? "C2'" B DG 12 ? ? 112.60 106.80 5.80 0.50 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A A71 301 ? N1 ? C A71 1 N1 2 1 N 1 A A71 301 ? C2 ? C A71 1 C2 3 1 N 1 A A71 301 ? C3 ? C A71 1 C3 4 1 N 1 A A71 301 ? C4 ? C A71 1 C4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A71 N1 N N N 1 A71 C2 C N N 2 A71 C3 C N N 3 A71 C4 C N N 4 A71 C5 C N N 5 A71 C6 C N N 6 A71 C7 C N N 7 A71 N8 N N N 8 A71 N9 N N N 9 A71 N10 N N N 10 A71 PT PT N N 11 A71 N11 N N N 12 A71 HN11 H N N 13 A71 HN12 H N N 14 A71 H21 H N N 15 A71 H22 H N N 16 A71 H31 H N N 17 A71 H32 H N N 18 A71 H41 H N N 19 A71 H42 H N N 20 A71 H51 H N N 21 A71 H52 H N N 22 A71 H61 H N N 23 A71 H62 H N N 24 A71 H71 H N N 25 A71 H72 H N N 26 A71 HN81 H N N 27 A71 HN82 H N N 28 A71 HN91 H N N 29 A71 HN92 H N N 30 A71 HN93 H N N 31 A71 H101 H N N 32 A71 H102 H N N 33 A71 H103 H N N 34 A71 H111 H N N 35 A71 H112 H N N 36 A71 H113 H N N 37 A72 C12 C N N 38 A72 C13 C N N 39 A72 C14 C N N 40 A72 C15 C N N 41 A72 C16 C N N 42 A72 C17 C N N 43 A72 N18 N N N 44 A72 N19 N N N 45 A72 N20 N N N 46 A72 PT PT N N 47 A72 N21 N N N 48 A72 C22 C N N 49 A72 C23 C N N 50 A72 C24 C N N 51 A72 C25 C N N 52 A72 C26 C N N 53 A72 C27 C N N 54 A72 H121 H N N 55 A72 H122 H N N 56 A72 H123 H N N 57 A72 H131 H N N 58 A72 H132 H N N 59 A72 H141 H N N 60 A72 H142 H N N 61 A72 H151 H N N 62 A72 H152 H N N 63 A72 H161 H N N 64 A72 H162 H N N 65 A72 H171 H N N 66 A72 H172 H N N 67 A72 H181 H N N 68 A72 H182 H N N 69 A72 H191 H N N 70 A72 H192 H N N 71 A72 H193 H N N 72 A72 H201 H N N 73 A72 H202 H N N 74 A72 H203 H N N 75 A72 H211 H N N 76 A72 H212 H N N 77 A72 H221 H N N 78 A72 H222 H N N 79 A72 H231 H N N 80 A72 H232 H N N 81 A72 H241 H N N 82 A72 H242 H N N 83 A72 H251 H N N 84 A72 H252 H N N 85 A72 H261 H N N 86 A72 H262 H N N 87 A72 H271 H N N 88 A72 H272 H N N 89 A72 H273 H N N 90 DA OP3 O N N 91 DA P P N N 92 DA OP1 O N N 93 DA OP2 O N N 94 DA "O5'" O N N 95 DA "C5'" C N N 96 DA "C4'" C N R 97 DA "O4'" O N N 98 DA "C3'" C N S 99 DA "O3'" O N N 100 DA "C2'" C N N 101 DA "C1'" C N R 102 DA N9 N Y N 103 DA C8 C Y N 104 DA N7 N Y N 105 DA C5 C Y N 106 DA C6 C Y N 107 DA N6 N N N 108 DA N1 N Y N 109 DA C2 C Y N 110 DA N3 N Y N 111 DA C4 C Y N 112 DA HOP3 H N N 113 DA HOP2 H N N 114 DA "H5'" H N N 115 DA "H5''" H N N 116 DA "H4'" H N N 117 DA "H3'" H N N 118 DA "HO3'" H N N 119 DA "H2'" H N N 120 DA "H2''" H N N 121 DA "H1'" H N N 122 DA H8 H N N 123 DA H61 H N N 124 DA H62 H N N 125 DA H2 H N N 126 DC OP3 O N N 127 DC P P N N 128 DC OP1 O N N 129 DC OP2 O N N 130 DC "O5'" O N N 131 DC "C5'" C N N 132 DC "C4'" C N R 133 DC "O4'" O N N 134 DC "C3'" C N S 135 DC "O3'" O N N 136 DC "C2'" C N N 137 DC "C1'" C N R 138 DC N1 N N N 139 DC C2 C N N 140 DC O2 O N N 141 DC N3 N N N 142 DC C4 C N N 143 DC N4 N N N 144 DC C5 C N N 145 DC C6 C N N 146 DC HOP3 H N N 147 DC HOP2 H N N 148 DC "H5'" H N N 149 DC "H5''" H N N 150 DC "H4'" H N N 151 DC "H3'" H N N 152 DC "HO3'" H N N 153 DC "H2'" H N N 154 DC "H2''" H N N 155 DC "H1'" H N N 156 DC H41 H N N 157 DC H42 H N N 158 DC H5 H N N 159 DC H6 H N N 160 DG OP3 O N N 161 DG P P N N 162 DG OP1 O N N 163 DG OP2 O N N 164 DG "O5'" O N N 165 DG "C5'" C N N 166 DG "C4'" C N R 167 DG "O4'" O N N 168 DG "C3'" C N S 169 DG "O3'" O N N 170 DG "C2'" C N N 171 DG "C1'" C N R 172 DG N9 N Y N 173 DG C8 C Y N 174 DG N7 N Y N 175 DG C5 C Y N 176 DG C6 C N N 177 DG O6 O N N 178 DG N1 N N N 179 DG C2 C N N 180 DG N2 N N N 181 DG N3 N N N 182 DG C4 C Y N 183 DG HOP3 H N N 184 DG HOP2 H N N 185 DG "H5'" H N N 186 DG "H5''" H N N 187 DG "H4'" H N N 188 DG "H3'" H N N 189 DG "HO3'" H N N 190 DG "H2'" H N N 191 DG "H2''" H N N 192 DG "H1'" H N N 193 DG H8 H N N 194 DG H1 H N N 195 DG H21 H N N 196 DG H22 H N N 197 DT OP3 O N N 198 DT P P N N 199 DT OP1 O N N 200 DT OP2 O N N 201 DT "O5'" O N N 202 DT "C5'" C N N 203 DT "C4'" C N R 204 DT "O4'" O N N 205 DT "C3'" C N S 206 DT "O3'" O N N 207 DT "C2'" C N N 208 DT "C1'" C N R 209 DT N1 N N N 210 DT C2 C N N 211 DT O2 O N N 212 DT N3 N N N 213 DT C4 C N N 214 DT O4 O N N 215 DT C5 C N N 216 DT C7 C N N 217 DT C6 C N N 218 DT HOP3 H N N 219 DT HOP2 H N N 220 DT "H5'" H N N 221 DT "H5''" H N N 222 DT "H4'" H N N 223 DT "H3'" H N N 224 DT "HO3'" H N N 225 DT "H2'" H N N 226 DT "H2''" H N N 227 DT "H1'" H N N 228 DT H3 H N N 229 DT H71 H N N 230 DT H72 H N N 231 DT H73 H N N 232 DT H6 H N N 233 HOH O O N N 234 HOH H1 H N N 235 HOH H2 H N N 236 NA NA NA N N 237 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A71 N1 HN11 sing N N 1 A71 N1 HN12 sing N N 2 A71 N1 C2 sing N N 3 A71 C2 H21 sing N N 4 A71 C2 H22 sing N N 5 A71 C2 C3 sing N N 6 A71 C3 H31 sing N N 7 A71 C3 H32 sing N N 8 A71 C3 C4 sing N N 9 A71 C4 H41 sing N N 10 A71 C4 H42 sing N N 11 A71 C4 C5 sing N N 12 A71 C5 H51 sing N N 13 A71 C5 H52 sing N N 14 A71 C5 C6 sing N N 15 A71 C6 H61 sing N N 16 A71 C6 H62 sing N N 17 A71 C6 C7 sing N N 18 A71 C7 H71 sing N N 19 A71 C7 H72 sing N N 20 A71 C7 N8 sing N N 21 A71 N8 HN81 sing N N 22 A71 N8 HN82 sing N N 23 A71 N8 PT sing N N 24 A71 N9 PT sing N N 25 A71 N9 HN91 sing N N 26 A71 N9 HN92 sing N N 27 A71 N9 HN93 sing N N 28 A71 N10 PT sing N N 29 A71 N10 H101 sing N N 30 A71 N10 H102 sing N N 31 A71 N10 H103 sing N N 32 A71 PT N11 sing N N 33 A71 N11 H111 sing N N 34 A71 N11 H112 sing N N 35 A71 N11 H113 sing N N 36 A72 C12 H121 sing N N 37 A72 C12 H122 sing N N 38 A72 C12 H123 sing N N 39 A72 C12 C13 sing N N 40 A72 C13 H131 sing N N 41 A72 C13 H132 sing N N 42 A72 C13 C14 sing N N 43 A72 C14 H141 sing N N 44 A72 C14 H142 sing N N 45 A72 C14 C15 sing N N 46 A72 C15 H151 sing N N 47 A72 C15 H152 sing N N 48 A72 C15 C16 sing N N 49 A72 C16 H161 sing N N 50 A72 C16 H162 sing N N 51 A72 C16 C17 sing N N 52 A72 C17 H171 sing N N 53 A72 C17 H172 sing N N 54 A72 C17 N18 sing N N 55 A72 N18 H181 sing N N 56 A72 N18 H182 sing N N 57 A72 N18 PT sing N N 58 A72 N19 PT sing N N 59 A72 N19 H191 sing N N 60 A72 N19 H192 sing N N 61 A72 N19 H193 sing N N 62 A72 N20 PT sing N N 63 A72 N20 H201 sing N N 64 A72 N20 H202 sing N N 65 A72 N20 H203 sing N N 66 A72 PT N21 sing N N 67 A72 N21 H211 sing N N 68 A72 N21 H212 sing N N 69 A72 N21 C22 sing N N 70 A72 C22 H221 sing N N 71 A72 C22 H222 sing N N 72 A72 C22 C23 sing N N 73 A72 C23 H231 sing N N 74 A72 C23 H232 sing N N 75 A72 C23 C24 sing N N 76 A72 C24 H241 sing N N 77 A72 C24 H242 sing N N 78 A72 C24 C25 sing N N 79 A72 C25 H251 sing N N 80 A72 C25 H252 sing N N 81 A72 C25 C26 sing N N 82 A72 C26 H261 sing N N 83 A72 C26 H262 sing N N 84 A72 C26 C27 sing N N 85 A72 C27 H271 sing N N 86 A72 C27 H272 sing N N 87 A72 C27 H273 sing N N 88 DA OP3 P sing N N 89 DA OP3 HOP3 sing N N 90 DA P OP1 doub N N 91 DA P OP2 sing N N 92 DA P "O5'" sing N N 93 DA OP2 HOP2 sing N N 94 DA "O5'" "C5'" sing N N 95 DA "C5'" "C4'" sing N N 96 DA "C5'" "H5'" sing N N 97 DA "C5'" "H5''" sing N N 98 DA "C4'" "O4'" sing N N 99 DA "C4'" "C3'" sing N N 100 DA "C4'" "H4'" sing N N 101 DA "O4'" "C1'" sing N N 102 DA "C3'" "O3'" sing N N 103 DA "C3'" "C2'" sing N N 104 DA "C3'" "H3'" sing N N 105 DA "O3'" "HO3'" sing N N 106 DA "C2'" "C1'" sing N N 107 DA "C2'" "H2'" sing N N 108 DA "C2'" "H2''" sing N N 109 DA "C1'" N9 sing N N 110 DA "C1'" "H1'" sing N N 111 DA N9 C8 sing Y N 112 DA N9 C4 sing Y N 113 DA C8 N7 doub Y N 114 DA C8 H8 sing N N 115 DA N7 C5 sing Y N 116 DA C5 C6 sing Y N 117 DA C5 C4 doub Y N 118 DA C6 N6 sing N N 119 DA C6 N1 doub Y N 120 DA N6 H61 sing N N 121 DA N6 H62 sing N N 122 DA N1 C2 sing Y N 123 DA C2 N3 doub Y N 124 DA C2 H2 sing N N 125 DA N3 C4 sing Y N 126 DC OP3 P sing N N 127 DC OP3 HOP3 sing N N 128 DC P OP1 doub N N 129 DC P OP2 sing N N 130 DC P "O5'" sing N N 131 DC OP2 HOP2 sing N N 132 DC "O5'" "C5'" sing N N 133 DC "C5'" "C4'" sing N N 134 DC "C5'" "H5'" sing N N 135 DC "C5'" "H5''" sing N N 136 DC "C4'" "O4'" sing N N 137 DC "C4'" "C3'" sing N N 138 DC "C4'" "H4'" sing N N 139 DC "O4'" "C1'" sing N N 140 DC "C3'" "O3'" sing N N 141 DC "C3'" "C2'" sing N N 142 DC "C3'" "H3'" sing N N 143 DC "O3'" "HO3'" sing N N 144 DC "C2'" "C1'" sing N N 145 DC "C2'" "H2'" sing N N 146 DC "C2'" "H2''" sing N N 147 DC "C1'" N1 sing N N 148 DC "C1'" "H1'" sing N N 149 DC N1 C2 sing N N 150 DC N1 C6 sing N N 151 DC C2 O2 doub N N 152 DC C2 N3 sing N N 153 DC N3 C4 doub N N 154 DC C4 N4 sing N N 155 DC C4 C5 sing N N 156 DC N4 H41 sing N N 157 DC N4 H42 sing N N 158 DC C5 C6 doub N N 159 DC C5 H5 sing N N 160 DC C6 H6 sing N N 161 DG OP3 P sing N N 162 DG OP3 HOP3 sing N N 163 DG P OP1 doub N N 164 DG P OP2 sing N N 165 DG P "O5'" sing N N 166 DG OP2 HOP2 sing N N 167 DG "O5'" "C5'" sing N N 168 DG "C5'" "C4'" sing N N 169 DG "C5'" "H5'" sing N N 170 DG "C5'" "H5''" sing N N 171 DG "C4'" "O4'" sing N N 172 DG "C4'" "C3'" sing N N 173 DG "C4'" "H4'" sing N N 174 DG "O4'" "C1'" sing N N 175 DG "C3'" "O3'" sing N N 176 DG "C3'" "C2'" sing N N 177 DG "C3'" "H3'" sing N N 178 DG "O3'" "HO3'" sing N N 179 DG "C2'" "C1'" sing N N 180 DG "C2'" "H2'" sing N N 181 DG "C2'" "H2''" sing N N 182 DG "C1'" N9 sing N N 183 DG "C1'" "H1'" sing N N 184 DG N9 C8 sing Y N 185 DG N9 C4 sing Y N 186 DG C8 N7 doub Y N 187 DG C8 H8 sing N N 188 DG N7 C5 sing Y N 189 DG C5 C6 sing N N 190 DG C5 C4 doub Y N 191 DG C6 O6 doub N N 192 DG C6 N1 sing N N 193 DG N1 C2 sing N N 194 DG N1 H1 sing N N 195 DG C2 N2 sing N N 196 DG C2 N3 doub N N 197 DG N2 H21 sing N N 198 DG N2 H22 sing N N 199 DG N3 C4 sing N N 200 DT OP3 P sing N N 201 DT OP3 HOP3 sing N N 202 DT P OP1 doub N N 203 DT P OP2 sing N N 204 DT P "O5'" sing N N 205 DT OP2 HOP2 sing N N 206 DT "O5'" "C5'" sing N N 207 DT "C5'" "C4'" sing N N 208 DT "C5'" "H5'" sing N N 209 DT "C5'" "H5''" sing N N 210 DT "C4'" "O4'" sing N N 211 DT "C4'" "C3'" sing N N 212 DT "C4'" "H4'" sing N N 213 DT "O4'" "C1'" sing N N 214 DT "C3'" "O3'" sing N N 215 DT "C3'" "C2'" sing N N 216 DT "C3'" "H3'" sing N N 217 DT "O3'" "HO3'" sing N N 218 DT "C2'" "C1'" sing N N 219 DT "C2'" "H2'" sing N N 220 DT "C2'" "H2''" sing N N 221 DT "C1'" N1 sing N N 222 DT "C1'" "H1'" sing N N 223 DT N1 C2 sing N N 224 DT N1 C6 sing N N 225 DT C2 O2 doub N N 226 DT C2 N3 sing N N 227 DT N3 C4 sing N N 228 DT N3 H3 sing N N 229 DT C4 O4 doub N N 230 DT C4 C5 sing N N 231 DT C5 C7 sing N N 232 DT C5 C6 doub N N 233 DT C7 H71 sing N N 234 DT C7 H72 sing N N 235 DT C7 H73 sing N N 236 DT C6 H6 sing N N 237 HOH O H1 sing N N 238 HOH O H2 sing N N 239 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2DYW 'double helix' 2DYW 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.331 -0.114 -0.082 1.840 -2.425 -0.463 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.240 -0.201 0.170 -6.224 -4.864 -4.537 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.023 -0.080 0.157 0.912 -7.457 -0.478 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.209 -0.057 -0.002 11.125 -10.490 0.487 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 -0.020 -0.129 0.027 8.560 -15.775 2.774 5 A_DA5:DT8_B A 5 ? B 8 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.118 -0.120 -0.011 0.153 -16.197 3.343 6 A_DA6:DT7_B A 6 ? B 7 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.007 -0.083 -0.032 0.435 -14.434 3.041 7 A_DT7:DA6_B A 7 ? B 6 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.109 -0.168 -0.113 0.080 -13.241 1.524 8 A_DT8:DA5_B A 8 ? B 5 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.175 -0.133 0.056 -12.648 -9.681 -3.238 9 A_DC9:DG4_B A 9 ? B 4 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.163 -0.126 0.434 5.135 -7.774 1.968 10 A_DG10:DC3_B A 10 ? B 3 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.178 -0.185 0.157 -0.824 -10.836 -1.697 11 A_DC11:DG2_B A 11 ? B 2 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.305 -0.175 -0.004 2.327 -20.564 2.114 12 A_DG12:DC1_B A 12 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -1.130 -0.102 3.538 -5.291 -6.075 34.183 0.842 0.993 3.631 -10.160 8.850 35.092 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.799 0.414 3.259 3.094 -1.770 41.659 0.766 -0.794 3.288 -2.483 -4.341 41.804 2 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.773 0.505 3.165 1.476 11.464 24.859 -1.766 1.999 3.046 24.978 -3.215 27.377 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 0.305 0.069 3.315 0.285 4.615 37.677 -0.492 -0.432 3.302 7.113 -0.439 37.949 4 AA_DG4DA5:DT8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.193 -0.176 3.378 -1.145 1.809 37.952 -0.508 0.146 3.370 2.779 1.758 38.011 5 AA_DA5DA6:DT7DT8_BB A 5 ? B 8 ? A 6 ? B 7 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.110 -0.558 3.226 0.849 -3.096 31.269 -0.453 -0.046 3.266 -5.726 -1.570 31.430 6 AA_DA6DT7:DA6DT7_BB A 6 ? B 7 ? A 7 ? B 6 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.135 -0.321 3.187 1.427 -0.776 35.373 -0.417 0.427 3.185 -1.276 -2.346 35.409 7 AA_DT7DT8:DA5DA6_BB A 7 ? B 6 ? A 8 ? B 5 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.254 -0.203 3.458 -1.992 -0.931 42.345 -0.181 0.136 3.469 -1.288 2.755 42.399 8 AA_DT8DC9:DG4DA5_BB A 8 ? B 5 ? A 9 ? B 4 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.553 0.680 2.965 -4.601 5.074 28.149 0.337 -2.034 2.915 10.241 9.287 28.954 9 AA_DC9DG10:DC3DG4_BB A 9 ? B 4 ? A 10 ? B 3 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.397 0.719 3.459 -1.283 -8.949 44.855 1.741 1.682 3.302 -11.588 1.661 45.711 10 AA_DG10DC11:DG2DC3_BB A 10 ? B 3 ? A 11 ? B 2 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 0.710 0.620 3.288 2.043 7.899 30.714 -0.369 -0.909 3.378 14.592 -3.774 31.754 11 AA_DC11DG12:DC1DG2_BB A 11 ? B 2 ? A 12 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(6-AMINOHEXYLAMINE)(TRIAMMINE) PLATINUM(II) COMPLEX' A71 3 'SODIUM ION' NA 4 'TRANS-BIS(HEXYLAMINE)-(DIAMMINE) PLATINUM(II) COMPLEX' A72 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 355D _pdbx_initial_refinement_model.details '355D(NDB entry: bdl084)' #