HEADER SUGAR BINDING PROTEIN 29-SEP-06 2DZJ TITLE 2DZJ/SOLUTION STRUCTURE OF THE N-TERMINAL UBIQUITIN-LIKE DOMAIN IN TITLE 2 HUMAN SYNAPTIC GLYCOPROTEIN SC2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNAPTIC GLYCOPROTEIN SC2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBIQUITIN-LIKE DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GPSN2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060522-14; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SYNAPTIC GLYCOPROTEIN SC2, UBIQUITIN-LIKE FOLD, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 SUGAR BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.ZHAO,M.YONEYAMA,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DZJ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DZJ 1 VERSN REVDAT 1 29-MAR-07 2DZJ 0 JRNL AUTH C.ZHAO,M.YONEYAMA,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL 2DZJ/SOLUTION STRUCTURE OF THE N-TERMINAL UBIQUITIN-LIKE JRNL TITL 2 DOMAIN IN HUMAN SYNAPTIC GLYCOPROTEIN SC2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DZJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000026037. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296.0 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.10MM UBIQUITIN-LIKE DOMAIN U REMARK 210 -15N, 13C; 20MM D-TRIS-HCL REMARK 210 (PH7.0), 100MM NACL, 1MM D-DTT, REMARK 210 0.02% NAN3, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9748, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 42.92 34.55 REMARK 500 1 LYS A 9 44.04 -95.13 REMARK 500 1 LYS A 19 -64.96 -124.62 REMARK 500 1 ARG A 54 -62.13 -103.73 REMARK 500 1 GLN A 55 109.88 -38.14 REMARK 500 1 PRO A 76 24.90 -69.76 REMARK 500 2 LYS A 19 -60.06 -124.72 REMARK 500 2 PRO A 76 25.46 -69.74 REMARK 500 3 LYS A 19 -63.80 -121.38 REMARK 500 3 PRO A 76 25.02 -69.78 REMARK 500 4 MET A 8 43.52 -88.24 REMARK 500 4 LYS A 19 -65.01 -123.03 REMARK 500 4 LYS A 23 105.87 -58.29 REMARK 500 4 GLN A 55 98.89 -48.81 REMARK 500 4 GLU A 69 -37.39 -35.47 REMARK 500 4 PRO A 76 25.00 -69.78 REMARK 500 5 SER A 3 171.35 -48.39 REMARK 500 5 LYS A 19 -75.05 -107.13 REMARK 500 5 LYS A 23 107.79 -49.55 REMARK 500 5 PRO A 76 25.02 -69.75 REMARK 500 6 LYS A 9 80.83 -69.95 REMARK 500 6 LYS A 19 -75.31 -108.18 REMARK 500 6 GLN A 55 109.91 -45.20 REMARK 500 6 GLU A 69 -37.82 -39.98 REMARK 500 6 PRO A 76 24.75 -69.72 REMARK 500 7 LYS A 19 -63.88 -121.08 REMARK 500 7 GLN A 55 93.51 -52.70 REMARK 500 7 PRO A 76 25.08 -69.77 REMARK 500 8 LYS A 19 -70.01 -117.60 REMARK 500 8 LYS A 23 105.64 -51.02 REMARK 500 8 PRO A 76 25.28 -69.73 REMARK 500 9 SER A 3 -60.45 -130.61 REMARK 500 9 LYS A 9 116.52 -161.72 REMARK 500 9 LYS A 19 -72.93 -120.29 REMARK 500 9 GLN A 55 99.81 -66.69 REMARK 500 9 PRO A 76 25.07 -69.73 REMARK 500 10 LYS A 19 -75.34 -115.56 REMARK 500 10 LYS A 23 109.40 -55.61 REMARK 500 10 GLU A 69 -39.38 -35.90 REMARK 500 10 PRO A 76 25.11 -69.74 REMARK 500 11 MET A 8 129.16 -38.63 REMARK 500 11 HIS A 10 177.62 -55.53 REMARK 500 11 LYS A 19 -64.92 -125.03 REMARK 500 11 LYS A 23 108.99 -53.65 REMARK 500 11 GLN A 55 105.01 -44.89 REMARK 500 11 LEU A 66 157.68 -46.11 REMARK 500 11 GLU A 69 -39.62 -34.93 REMARK 500 11 PRO A 76 24.97 -69.78 REMARK 500 11 THR A 79 -36.52 -39.40 REMARK 500 12 LYS A 23 107.79 -57.24 REMARK 500 REMARK 500 THIS ENTRY HAS 89 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002004169.1 RELATED DB: TARGETDB DBREF 2DZJ A 8 88 UNP Q9NZ01 GPSN2_HUMAN 1 81 SEQADV 2DZJ GLY A 1 UNP Q9NZ01 CLONING ARTIFACT SEQADV 2DZJ SER A 2 UNP Q9NZ01 CLONING ARTIFACT SEQADV 2DZJ SER A 3 UNP Q9NZ01 CLONING ARTIFACT SEQADV 2DZJ GLY A 4 UNP Q9NZ01 CLONING ARTIFACT SEQADV 2DZJ SER A 5 UNP Q9NZ01 CLONING ARTIFACT SEQADV 2DZJ SER A 6 UNP Q9NZ01 CLONING ARTIFACT SEQADV 2DZJ GLY A 7 UNP Q9NZ01 CLONING ARTIFACT SEQRES 1 A 88 GLY SER SER GLY SER SER GLY MET LYS HIS TYR GLU VAL SEQRES 2 A 88 GLU ILE LEU ASP ALA LYS THR ARG GLU LYS LEU CYS PHE SEQRES 3 A 88 LEU ASP LYS VAL GLU PRO HIS ALA THR ILE ALA GLU ILE SEQRES 4 A 88 LYS ASN LEU PHE THR LYS THR HIS PRO GLN TRP TYR PRO SEQRES 5 A 88 ALA ARG GLN SER LEU ARG LEU ASP PRO LYS GLY LYS SER SEQRES 6 A 88 LEU LYS ASP GLU ASP VAL LEU GLN LYS LEU PRO VAL GLY SEQRES 7 A 88 THR THR ALA THR LEU TYR PHE ARG ASP LEU HELIX 1 1 THR A 35 HIS A 47 1 13 SHEET 1 A 4 CYS A 25 VAL A 30 0 SHEET 2 A 4 TYR A 11 ASP A 17 -1 N VAL A 13 O LEU A 27 SHEET 3 A 4 THR A 80 PHE A 85 1 O PHE A 85 N LEU A 16 SHEET 4 A 4 LEU A 57 ARG A 58 -1 N ARG A 58 O TYR A 84 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1