HEADER TRANSFERASE 10-OCT-06 2E0K TITLE CRYSTAL STRUCTURE OF CBIL, A METHYLTRANSFERASE INVOLVED IN ANAEROBIC TITLE 2 VITAMIN B12 BIOSYNTHESIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRECORRIN-2 C20-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.130; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLOROBACULUM TEPIDUM; SOURCE 3 ORGANISM_TAXID: 1097; SOURCE 4 GENE: CBIL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS PRECORRIN-2, COBALT-FACTOR II, TETRAPYRROLE, S-ADENOSYLMETHIONINE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.WADA,K.FUKUYAMA REVDAT 4 25-OCT-23 2E0K 1 SEQADV REVDAT 3 13-JUL-11 2E0K 1 VERSN REVDAT 2 24-FEB-09 2E0K 1 VERSN REVDAT 1 16-JAN-07 2E0K 0 JRNL AUTH K.WADA,J.HARADA,Y.YAEDA,H.TAMIAKI,H.OH-OKA,K.FUKUYAMA JRNL TITL CRYSTAL STRUCTURES OF CBIL, A METHYLTRANSFERASE INVOLVED IN JRNL TITL 2 ANAEROBIC VITAMIN B BIOSYNTHESIS, AND CBIL IN COMPLEX WITH JRNL TITL 3 S-ADENOSYLHOMOCYSTEINE--IMPLICATIONS FOR THE REACTION JRNL TITL 4 MECHANISM. JRNL REF FEBS J. V. 274 563 2007 JRNL REFN ISSN 1742-464X JRNL PMID 17229157 JRNL DOI 10.1111/J.1742-4658.2006.05611.X REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 27638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1478 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1968 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3603 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 151 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50000 REMARK 3 B22 (A**2) : -0.50000 REMARK 3 B33 (A**2) : 0.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.255 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.145 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3662 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4966 ; 1.896 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 7.153 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;38.827 ;22.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 607 ;18.040 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.425 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 588 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2722 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1840 ; 0.251 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2527 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 222 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.243 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.131 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2480 ; 1.227 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3868 ; 1.955 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1326 ; 2.765 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1098 ; 4.141 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): 31.2650 .4880 30.7130 REMARK 3 T TENSOR REMARK 3 T11: .1319 T22: -.0121 REMARK 3 T33: .0169 T12: -.0202 REMARK 3 T13: -.0740 T23: -.0194 REMARK 3 L TENSOR REMARK 3 L11: 1.6674 L22: 3.0625 REMARK 3 L33: 2.2378 L12: -.4806 REMARK 3 L13: 1.1468 L23: -.4079 REMARK 3 S TENSOR REMARK 3 S11: .3178 S12: .0534 S13: -.2438 REMARK 3 S21: .0573 S22: -.0546 S23: .2062 REMARK 3 S31: .3309 S32: .1094 S33: -.2632 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 34.9380 -2.3870 48.2540 REMARK 3 T TENSOR REMARK 3 T11: .4602 T22: .4531 REMARK 3 T33: .4597 T12: .0009 REMARK 3 T13: -.0120 T23: .0030 REMARK 3 L TENSOR REMARK 3 L11: 38.0965 L22: 26.3485 REMARK 3 L33: 16.3615 L12: 9.8021 REMARK 3 L13: 5.7956 L23: .8957 REMARK 3 S TENSOR REMARK 3 S11: .7143 S12: -5.0626 S13: 1.4333 REMARK 3 S21: 2.3587 S22: -.3570 S23: 3.2404 REMARK 3 S31: .5627 S32: -1.1997 S33: -.3572 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 34.6680 10.3660 35.5410 REMARK 3 T TENSOR REMARK 3 T11: .1207 T22: .0362 REMARK 3 T33: -.0174 T12: -.0136 REMARK 3 T13: -.0217 T23: .0113 REMARK 3 L TENSOR REMARK 3 L11: 1.3312 L22: 2.7275 REMARK 3 L33: 1.3959 L12: -.5283 REMARK 3 L13: .7390 L23: .8556 REMARK 3 S TENSOR REMARK 3 S11: .2227 S12: -.0874 S13: -.0253 REMARK 3 S21: .3749 S22: -.0213 S23: -.0033 REMARK 3 S31: .2576 S32: .0930 S33: -.2014 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 153 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9510 19.2480 42.1120 REMARK 3 T TENSOR REMARK 3 T11: -.0460 T22: .0959 REMARK 3 T33: .1504 T12: -.0334 REMARK 3 T13: .1507 T23: -.0451 REMARK 3 L TENSOR REMARK 3 L11: 3.2351 L22: 1.0421 REMARK 3 L33: 4.6742 L12: .8393 REMARK 3 L13: -.0417 L23: .4836 REMARK 3 S TENSOR REMARK 3 S11: .0932 S12: -.3426 S13: .0300 REMARK 3 S21: .2885 S22: -.0970 S23: .3504 REMARK 3 S31: .1006 S32: -.6932 S33: .0038 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 55 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3810 25.0410 15.4300 REMARK 3 T TENSOR REMARK 3 T11: .2200 T22: .0782 REMARK 3 T33: -.0604 T12: -.0078 REMARK 3 T13: -.0453 T23: .0536 REMARK 3 L TENSOR REMARK 3 L11: 2.6617 L22: 3.6654 REMARK 3 L33: .6281 L12: -1.0258 REMARK 3 L13: .9814 L23: -.3485 REMARK 3 S TENSOR REMARK 3 S11: .0252 S12: .3053 S13: .1765 REMARK 3 S21: -.6966 S22: -.2204 S23: .0134 REMARK 3 S31: -.0184 S32: .1703 S33: .1952 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 56 B 98 REMARK 3 ORIGIN FOR THE GROUP (A): 24.5870 33.3080 14.1450 REMARK 3 T TENSOR REMARK 3 T11: .1097 T22: .0422 REMARK 3 T33: -.0319 T12: .0304 REMARK 3 T13: -.1904 T23: .1765 REMARK 3 L TENSOR REMARK 3 L11: 3.6667 L22: 7.4002 REMARK 3 L33: 2.3728 L12: -.2654 REMARK 3 L13: -.1311 L23: -2.8416 REMARK 3 S TENSOR REMARK 3 S11: -.1117 S12: .5232 S13: .6971 REMARK 3 S21: -.4771 S22: .1087 S23: .5121 REMARK 3 S31: -.1387 S32: -.0996 S33: .0030 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 99 B 163 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7610 26.4520 30.5210 REMARK 3 T TENSOR REMARK 3 T11: .0885 T22: .0012 REMARK 3 T33: .0841 T12: .0051 REMARK 3 T13: .0049 T23: -.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.6492 L22: 1.3106 REMARK 3 L33: 1.1182 L12: .1689 REMARK 3 L13: .8050 L23: -.1622 REMARK 3 S TENSOR REMARK 3 S11: .0120 S12: -.0112 S13: .2116 REMARK 3 S21: -.0158 S22: -.0596 S23: .3442 REMARK 3 S31: -.1342 S32: .0359 S33: .0477 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 164 B 245 REMARK 3 ORIGIN FOR THE GROUP (A): 42.3020 29.7940 39.8810 REMARK 3 T TENSOR REMARK 3 T11: .0606 T22: .0235 REMARK 3 T33: .0161 T12: -.0526 REMARK 3 T13: -.0085 T23: -.0265 REMARK 3 L TENSOR REMARK 3 L11: 2.7099 L22: 3.0079 REMARK 3 L33: 1.3314 L12: .9160 REMARK 3 L13: -.5233 L23: -.6246 REMARK 3 S TENSOR REMARK 3 S11: .0335 S12: -.1402 S13: .3806 REMARK 3 S21: .2186 S22: -.0234 S23: -.0206 REMARK 3 S31: -.1326 S32: .1291 S33: -.0101 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2E0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000026074. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29174 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26600 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2CBF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.2M AMMONIUM NITRATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.84850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.10700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.10700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.77275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.10700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.10700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.92425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.10700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.10700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 92.77275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.10700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.10700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.92425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.84850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HOMODIMER IN THE ASYMMETRIC REMARK 300 UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 76 REMARK 465 ALA A 77 REMARK 465 ALA A 78 REMARK 465 GLU A 79 REMARK 465 SER A 246 REMARK 465 LYS A 247 REMARK 465 LEU A 248 REMARK 465 ALA A 249 REMARK 465 ALA A 250 REMARK 465 ALA A 251 REMARK 465 LEU A 252 REMARK 465 GLU A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 MET B 1 REMARK 465 SER B 246 REMARK 465 LYS B 247 REMARK 465 LEU B 248 REMARK 465 ALA B 249 REMARK 465 ALA B 250 REMARK 465 ALA B 251 REMARK 465 LEU B 252 REMARK 465 GLU B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 465 HIS B 256 REMARK 465 HIS B 257 REMARK 465 HIS B 258 REMARK 465 HIS B 259 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 73 CZ ARG A 73 NH2 0.165 REMARK 500 ARG B 97 CZ ARG B 97 NH1 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG A 73 NE - CZ - NH2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 97 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 2 -7.30 -141.98 REMARK 500 ASN A 3 -1.78 -51.34 REMARK 500 GLN A 4 -122.44 -88.74 REMARK 500 LYS A 55 -6.60 -57.32 REMARK 500 SER A 72 -93.73 -155.62 REMARK 500 ARG A 73 78.97 -68.66 REMARK 500 ALA A 83 -19.24 -43.32 REMARK 500 ALA A 84 12.49 -56.04 REMARK 500 GLN A 150 95.04 11.11 REMARK 500 GLU A 210 134.38 -38.26 REMARK 500 SER A 233 143.74 -171.83 REMARK 500 GLN A 238 54.79 -111.19 REMARK 500 PRO A 243 114.30 -33.79 REMARK 500 PHE A 244 -3.99 -58.43 REMARK 500 GLN B 4 -65.40 -160.68 REMARK 500 SER B 6 -72.09 -116.19 REMARK 500 SER B 43 -165.35 -76.26 REMARK 500 ALA B 45 94.20 60.92 REMARK 500 PRO B 70 -149.93 -76.42 REMARK 500 ALA B 77 -14.38 -33.73 REMARK 500 ALA B 95 -2.91 -59.07 REMARK 500 GLN B 150 116.65 -17.25 REMARK 500 SER B 151 -2.82 72.80 REMARK 500 ILE B 160 132.98 -20.21 REMARK 500 ASP B 161 -63.70 -94.56 REMARK 500 SER B 174 -78.80 -66.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2E0N RELATED DB: PDB REMARK 900 THE SAME ENZYME COMPLEXED WITH S-ADENOSYLHOMOCYSTEINE DBREF 2E0K A 1 246 UNP Q8KFD9 Q8KFD9_CHLTE 1 246 DBREF 2E0K B 1 246 UNP Q8KFD9 Q8KFD9_CHLTE 1 246 SEQADV 2E0K LYS A 247 UNP Q8KFD9 CLONING ARTIFACT SEQADV 2E0K LEU A 248 UNP Q8KFD9 CLONING ARTIFACT SEQADV 2E0K ALA A 249 UNP Q8KFD9 CLONING ARTIFACT SEQADV 2E0K ALA A 250 UNP Q8KFD9 CLONING ARTIFACT SEQADV 2E0K ALA A 251 UNP Q8KFD9 CLONING ARTIFACT SEQADV 2E0K LEU A 252 UNP Q8KFD9 CLONING ARTIFACT SEQADV 2E0K GLU A 253 UNP Q8KFD9 CLONING ARTIFACT SEQADV 2E0K HIS A 254 UNP Q8KFD9 EXPRESSION TAG SEQADV 2E0K HIS A 255 UNP Q8KFD9 EXPRESSION TAG SEQADV 2E0K HIS A 256 UNP Q8KFD9 EXPRESSION TAG SEQADV 2E0K HIS A 257 UNP Q8KFD9 EXPRESSION TAG SEQADV 2E0K HIS A 258 UNP Q8KFD9 EXPRESSION TAG SEQADV 2E0K HIS A 259 UNP Q8KFD9 EXPRESSION TAG SEQADV 2E0K LYS B 247 UNP Q8KFD9 CLONING ARTIFACT SEQADV 2E0K LEU B 248 UNP Q8KFD9 CLONING ARTIFACT SEQADV 2E0K ALA B 249 UNP Q8KFD9 CLONING ARTIFACT SEQADV 2E0K ALA B 250 UNP Q8KFD9 CLONING ARTIFACT SEQADV 2E0K ALA B 251 UNP Q8KFD9 CLONING ARTIFACT SEQADV 2E0K LEU B 252 UNP Q8KFD9 CLONING ARTIFACT SEQADV 2E0K GLU B 253 UNP Q8KFD9 CLONING ARTIFACT SEQADV 2E0K HIS B 254 UNP Q8KFD9 EXPRESSION TAG SEQADV 2E0K HIS B 255 UNP Q8KFD9 EXPRESSION TAG SEQADV 2E0K HIS B 256 UNP Q8KFD9 EXPRESSION TAG SEQADV 2E0K HIS B 257 UNP Q8KFD9 EXPRESSION TAG SEQADV 2E0K HIS B 258 UNP Q8KFD9 EXPRESSION TAG SEQADV 2E0K HIS B 259 UNP Q8KFD9 EXPRESSION TAG SEQRES 1 A 259 MET ASN ASN GLN GLY SER ILE ILE SER VAL SER LEU GLY SEQRES 2 A 259 PRO GLY ASP PRO GLY LEU ILE THR VAL LYS ALA LEU SER SEQRES 3 A 259 GLN LEU ARG GLU ALA ASP VAL ILE TYR TYR PRO GLY THR SEQRES 4 A 259 VAL SER ALA SER GLY ALA VAL THR SER VAL ALA LEU ASP SEQRES 5 A 259 ILE LEU LYS GLU PHE ASP LEU ASP PRO SER LYS LEU ARG SEQRES 6 A 259 GLY MET LEU VAL PRO MET SER ARG SER ARG GLY ALA ALA SEQRES 7 A 259 GLU ALA SER TYR ALA ALA ASN TYR ALA SER MET ALA GLU SEQRES 8 A 259 GLU VAL GLN ALA GLY ARG ARG VAL ALA VAL VAL SER VAL SEQRES 9 A 259 GLY ASP GLY GLY PHE TYR SER THR ALA SER ALA ILE ILE SEQRES 10 A 259 GLU ARG ALA ARG ARG ASP GLY LEU ASP CYS SER MET THR SEQRES 11 A 259 PRO GLY ILE PRO ALA PHE ILE ALA ALA GLY SER ALA ALA SEQRES 12 A 259 GLY MET PRO LEU ALA LEU GLN SER ASP SER VAL LEU VAL SEQRES 13 A 259 LEU ALA GLN ILE ASP GLU ILE GLY GLU LEU GLU ARG ALA SEQRES 14 A 259 LEU VAL THR HIS SER THR VAL VAL VAL MET LYS LEU SER SEQRES 15 A 259 THR VAL ARG ASP GLU LEU VAL SER PHE LEU GLU ARG TYR SEQRES 16 A 259 ALA LYS PRO PHE LEU TYR ALA GLU LYS VAL GLY MET ALA SEQRES 17 A 259 GLY GLU PHE ILE THR MET GLU VAL ASP ALA LEU ARG SER SEQRES 18 A 259 ARG ALA ILE PRO TYR PHE SER LEU LEU VAL CYS SER PRO SEQRES 19 A 259 HIS CYS ARG GLN SER THR LEU SER PRO PHE ALA SER LYS SEQRES 20 A 259 LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 259 MET ASN ASN GLN GLY SER ILE ILE SER VAL SER LEU GLY SEQRES 2 B 259 PRO GLY ASP PRO GLY LEU ILE THR VAL LYS ALA LEU SER SEQRES 3 B 259 GLN LEU ARG GLU ALA ASP VAL ILE TYR TYR PRO GLY THR SEQRES 4 B 259 VAL SER ALA SER GLY ALA VAL THR SER VAL ALA LEU ASP SEQRES 5 B 259 ILE LEU LYS GLU PHE ASP LEU ASP PRO SER LYS LEU ARG SEQRES 6 B 259 GLY MET LEU VAL PRO MET SER ARG SER ARG GLY ALA ALA SEQRES 7 B 259 GLU ALA SER TYR ALA ALA ASN TYR ALA SER MET ALA GLU SEQRES 8 B 259 GLU VAL GLN ALA GLY ARG ARG VAL ALA VAL VAL SER VAL SEQRES 9 B 259 GLY ASP GLY GLY PHE TYR SER THR ALA SER ALA ILE ILE SEQRES 10 B 259 GLU ARG ALA ARG ARG ASP GLY LEU ASP CYS SER MET THR SEQRES 11 B 259 PRO GLY ILE PRO ALA PHE ILE ALA ALA GLY SER ALA ALA SEQRES 12 B 259 GLY MET PRO LEU ALA LEU GLN SER ASP SER VAL LEU VAL SEQRES 13 B 259 LEU ALA GLN ILE ASP GLU ILE GLY GLU LEU GLU ARG ALA SEQRES 14 B 259 LEU VAL THR HIS SER THR VAL VAL VAL MET LYS LEU SER SEQRES 15 B 259 THR VAL ARG ASP GLU LEU VAL SER PHE LEU GLU ARG TYR SEQRES 16 B 259 ALA LYS PRO PHE LEU TYR ALA GLU LYS VAL GLY MET ALA SEQRES 17 B 259 GLY GLU PHE ILE THR MET GLU VAL ASP ALA LEU ARG SER SEQRES 18 B 259 ARG ALA ILE PRO TYR PHE SER LEU LEU VAL CYS SER PRO SEQRES 19 B 259 HIS CYS ARG GLN SER THR LEU SER PRO PHE ALA SER LYS SEQRES 20 B 259 LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *151(H2 O) HELIX 1 1 ASP A 16 ILE A 20 5 5 HELIX 2 2 THR A 21 ALA A 31 1 11 HELIX 3 3 SER A 48 LYS A 55 1 8 HELIX 4 4 ASP A 60 SER A 62 5 3 HELIX 5 5 TYR A 82 ALA A 84 5 3 HELIX 6 6 ASN A 85 ALA A 95 1 11 HELIX 7 7 ALA A 113 ASP A 123 1 11 HELIX 8 8 PRO A 134 ALA A 143 1 10 HELIX 9 9 GLU A 162 HIS A 173 1 12 HELIX 10 10 LEU A 181 ARG A 185 5 5 HELIX 11 11 GLU A 187 ALA A 196 1 10 HELIX 12 12 GLU A 215 ARG A 220 5 6 HELIX 13 13 PRO A 234 GLN A 238 5 5 HELIX 14 14 ASP B 16 ILE B 20 5 5 HELIX 15 15 THR B 21 ALA B 31 1 11 HELIX 16 16 SER B 48 LYS B 55 1 8 HELIX 17 17 GLU B 56 ASP B 58 5 3 HELIX 18 18 ASP B 60 SER B 62 5 3 HELIX 19 19 ALA B 77 ALA B 95 1 19 HELIX 20 20 ALA B 113 ASP B 123 1 11 HELIX 21 21 PRO B 134 ALA B 143 1 10 HELIX 22 22 ILE B 163 VAL B 171 1 9 HELIX 23 23 LEU B 181 ARG B 185 5 5 HELIX 24 24 GLU B 187 ALA B 196 1 10 HELIX 25 25 GLU B 215 ARG B 220 5 6 HELIX 26 26 PRO B 234 SER B 239 5 6 SHEET 1 A 3 VAL A 46 THR A 47 0 SHEET 2 A 3 VAL A 33 VAL A 40 -1 N THR A 39 O THR A 47 SHEET 3 A 3 LEU A 64 PRO A 70 1 O MET A 67 N TYR A 36 SHEET 1 B 5 VAL A 46 THR A 47 0 SHEET 2 B 5 VAL A 33 VAL A 40 -1 N THR A 39 O THR A 47 SHEET 3 B 5 VAL A 99 SER A 103 1 O ALA A 100 N TYR A 35 SHEET 4 B 5 ILE A 7 SER A 11 1 N ILE A 8 O VAL A 101 SHEET 5 B 5 CYS A 127 THR A 130 1 O SER A 128 N SER A 9 SHEET 1 C10 PHE A 211 THR A 213 0 SHEET 2 C10 PHE A 199 GLU A 203 -1 N TYR A 201 O THR A 213 SHEET 3 C10 SER A 228 CYS A 232 -1 O VAL A 231 N LEU A 200 SHEET 4 C10 VAL A 176 MET A 179 -1 N VAL A 178 O LEU A 230 SHEET 5 C10 VAL A 154 ALA A 158 1 N LEU A 157 O VAL A 177 SHEET 6 C10 VAL B 154 ALA B 158 -1 O VAL B 154 N VAL A 156 SHEET 7 C10 THR B 175 MET B 179 1 O VAL B 177 N LEU B 157 SHEET 8 C10 SER B 228 CYS B 232 -1 O CYS B 232 N VAL B 176 SHEET 9 C10 PHE B 199 GLU B 203 -1 N LEU B 200 O VAL B 231 SHEET 10 C10 PHE B 211 THR B 213 -1 O THR B 213 N TYR B 201 SHEET 1 D 3 VAL B 46 THR B 47 0 SHEET 2 D 3 VAL B 33 VAL B 40 -1 N THR B 39 O THR B 47 SHEET 3 D 3 LEU B 64 VAL B 69 1 O ARG B 65 N ILE B 34 SHEET 1 E 5 VAL B 46 THR B 47 0 SHEET 2 E 5 VAL B 33 VAL B 40 -1 N THR B 39 O THR B 47 SHEET 3 E 5 VAL B 99 SER B 103 1 O VAL B 102 N TYR B 35 SHEET 4 E 5 ILE B 7 SER B 11 1 N ILE B 8 O VAL B 99 SHEET 5 E 5 CYS B 127 THR B 130 1 O SER B 128 N SER B 9 CRYST1 88.214 88.214 123.697 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011336 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011336 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008084 0.00000