HEADER TRANSFERASE 28-OCT-06 2E1T TITLE CRYSTAL STRUCTURE OF DENDRANTHEMA MORIFOLIUM DMAT COMPLEXED WITH TITLE 2 MALONYL-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHRYSANTHEMUM X MORIFOLIUM; SOURCE 3 ORGANISM_TAXID: 41568; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS BAHD SUPERFAMILY, MALONYL-COA COMPLEX, ACYL TRANSFERASE, DENDRANTHEMA KEYWDS 2 MORIFOLIUM, DMAT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.UNNO,F.ICHIMAIDA,M.KUSUNOKI,T.NAKAYAMA REVDAT 6 16-OCT-24 2E1T 1 REMARK REVDAT 5 25-OCT-23 2E1T 1 REMARK REVDAT 4 24-FEB-09 2E1T 1 VERSN REVDAT 3 05-JUN-07 2E1T 1 JRNL REVDAT 2 17-APR-07 2E1T 1 REMARK REVDAT 1 10-APR-07 2E1T 0 JRNL AUTH H.UNNO,F.ICHIMAIDA,H.SUZUKI,S.TAKAHASHI,Y.TANAKA,A.SAITO, JRNL AUTH 2 T.NISHINO,M.KUSUNOKI,T.NAKAYAMA JRNL TITL STRUCTURAL AND MUTATIONAL STUDIES OF ANTHOCYANIN JRNL TITL 2 MALONYLTRANSFERASES ESTABLISH THE FEATURES OF BAHD ENZYME JRNL TITL 3 CATALYSIS JRNL REF J.BIOL.CHEM. V. 282 15812 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17383962 JRNL DOI 10.1074/JBC.M700638200 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 46812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2520 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2552 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6932 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 463 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.43000 REMARK 3 B22 (A**2) : -2.20000 REMARK 3 B33 (A**2) : 0.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.54000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.284 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.120 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7212 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9812 ; 1.401 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 876 ; 6.264 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 306 ;36.895 ;24.248 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1200 ;16.783 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;17.328 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1108 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5390 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3281 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4921 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 543 ; 0.169 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 81 ; 0.208 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.276 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4518 ; 0.804 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7154 ; 1.372 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3056 ; 1.853 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2658 ; 3.091 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 6 A 364 3 REMARK 3 1 B 6 B 364 3 REMARK 3 2 A 370 A 450 3 REMARK 3 2 B 370 B 450 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1760 ; 0.05 ; 0.05 REMARK 3 LOOSE POSITIONAL 1 A (A): 1706 ; 0.36 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 1760 ; 0.14 ; 0.50 REMARK 3 LOOSE THERMAL 1 A (A**2): 1706 ; 0.87 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2E1T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000026119. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49363 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.21400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2E1V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 8000, 10% GLYCEROL, 0.12M REMARK 280 AMMONIUM SULFATE, 0.1M SODIUM CACODYLATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 61.46100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER, FOR TWO MOLECULES IN THE ASYMMETRIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 PRO A 5 REMARK 465 ASP A 365 REMARK 465 MET A 366 REMARK 465 GLU A 367 REMARK 465 SER A 368 REMARK 465 PHE A 369 REMARK 465 LYS A 451 REMARK 465 ALA A 452 REMARK 465 TYR A 453 REMARK 465 LEU A 454 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 LEU B 4 REMARK 465 PRO B 5 REMARK 465 ASP B 365 REMARK 465 MET B 366 REMARK 465 GLU B 367 REMARK 465 SER B 368 REMARK 465 PHE B 369 REMARK 465 LYS B 451 REMARK 465 ALA B 452 REMARK 465 TYR B 453 REMARK 465 LEU B 454 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 364 O HOH A 1101 1.97 REMARK 500 NH1 ARG A 391 O HOH A 1033 2.04 REMARK 500 NE1 TRP A 284 O HOH A 1220 2.06 REMARK 500 NE2 GLN B 438 O HOH B 1111 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLU A 423 NH2 ARG B 253 1556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 7 N - CA - C ANGL. DEV. = 19.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 7 90.15 22.73 REMARK 500 THR A 21 -71.33 -124.99 REMARK 500 THR A 90 -70.48 -74.45 REMARK 500 LYS A 225 74.71 54.50 REMARK 500 ASP A 293 -143.94 -97.92 REMARK 500 ASP A 359 31.11 -98.72 REMARK 500 THR B 21 -63.50 -126.59 REMARK 500 LEU B 50 129.36 -171.42 REMARK 500 LYS B 225 70.47 49.71 REMARK 500 ASP B 293 -147.28 -100.23 REMARK 500 CYS B 421 -61.10 -92.60 REMARK 500 LYS B 422 -51.36 137.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 6 LEU A 7 62.13 REMARK 500 LYS A 422 GLU A 423 133.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLC A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLC B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2E1U RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT LIGANDS REMARK 900 RELATED ID: 2E1V RELATED DB: PDB REMARK 900 THE SAME PROTEIN, SELENO-METHIONINE DERIVATIVE DBREF 2E1T A 1 454 UNP A4PHY4 A4PHY4_CHRMO 1 454 DBREF 2E1T B 1 454 UNP A4PHY4 A4PHY4_CHRMO 1 454 SEQRES 1 A 454 MET ALA SER LEU PRO ILE LEU THR VAL LEU GLU GLN SER SEQRES 2 A 454 GLN VAL SER PRO PRO PRO ASP THR LEU GLY ASP LYS SER SEQRES 3 A 454 LEU GLN LEU THR PHE PHE ASP PHE PHE TRP LEU ARG SER SEQRES 4 A 454 PRO PRO ILE ASN ASN LEU PHE PHE TYR GLU LEU PRO ILE SEQRES 5 A 454 THR ARG SER GLN PHE THR GLU THR VAL VAL PRO ASN ILE SEQRES 6 A 454 LYS HIS SER LEU SER ILE THR LEU LYS HIS PHE TYR PRO SEQRES 7 A 454 PHE VAL GLY LYS LEU VAL VAL TYR PRO ALA PRO THR LYS SEQRES 8 A 454 LYS PRO GLU ILE CYS TYR VAL GLU GLY ASP SER VAL ALA SEQRES 9 A 454 VAL THR PHE ALA GLU CYS ASN LEU ASP LEU ASN GLU LEU SEQRES 10 A 454 THR GLY ASN HIS PRO ARG ASN CYS ASP LYS PHE TYR ASP SEQRES 11 A 454 LEU VAL PRO ILE LEU GLY GLU SER THR ARG LEU SER ASP SEQRES 12 A 454 CYS ILE LYS ILE PRO LEU PHE SER VAL GLN VAL THR LEU SEQRES 13 A 454 PHE PRO ASN GLN GLY ILE ALA ILE GLY ILE THR ASN HIS SEQRES 14 A 454 HIS CYS LEU GLY ASP ALA SER THR ARG PHE CYS PHE LEU SEQRES 15 A 454 LYS ALA TRP THR SER ILE ALA ARG SER GLY ASN ASN ASP SEQRES 16 A 454 GLU SER PHE LEU ALA ASN GLY THR ARG PRO LEU TYR ASP SEQRES 17 A 454 ARG ILE ILE LYS TYR PRO MET LEU ASP GLU ALA TYR LEU SEQRES 18 A 454 LYS ARG ALA LYS VAL GLU SER PHE ASN GLU ASP TYR VAL SEQRES 19 A 454 THR GLN SER LEU ALA GLY PRO SER ASP LYS LEU ARG ALA SEQRES 20 A 454 THR PHE ILE LEU THR ARG ALA VAL ILE ASN GLN LEU LYS SEQRES 21 A 454 ASP ARG VAL LEU ALA GLN LEU PRO THR LEU GLU TYR VAL SEQRES 22 A 454 SER SER PHE THR VAL ALA CYS ALA TYR ILE TRP SER CYS SEQRES 23 A 454 ILE ALA LYS SER ARG ASN ASP LYS LEU GLN LEU PHE GLY SEQRES 24 A 454 PHE PRO ILE ASP ARG ARG ALA ARG MET LYS PRO PRO ILE SEQRES 25 A 454 PRO THR ALA TYR PHE GLY ASN CYS VAL GLY GLY CYS ALA SEQRES 26 A 454 ALA ILE ALA LYS THR ASN LEU LEU ILE GLY LYS GLU GLY SEQRES 27 A 454 PHE ILE THR ALA ALA LYS LEU ILE GLY GLU ASN LEU HIS SEQRES 28 A 454 LYS THR LEU THR ASP TYR LYS ASP GLY VAL LEU LYS ASP SEQRES 29 A 454 ASP MET GLU SER PHE ASN ASP LEU VAL SER GLU GLY MET SEQRES 30 A 454 PRO THR THR MET THR TRP VAL SER GLY THR PRO LYS LEU SEQRES 31 A 454 ARG PHE TYR ASP MET ASP PHE GLY TRP GLY LYS PRO LYS SEQRES 32 A 454 LYS LEU GLU THR VAL SER ILE ASP HIS ASN GLY ALA ILE SEQRES 33 A 454 SER ILE ASN SER CYS LYS GLU SER ASN GLU ASP LEU GLU SEQRES 34 A 454 ILE GLY VAL CYS ILE SER ALA THR GLN MET GLU ASP PHE SEQRES 35 A 454 VAL HIS ILE PHE ASP ASP GLY LEU LYS ALA TYR LEU SEQRES 1 B 454 MET ALA SER LEU PRO ILE LEU THR VAL LEU GLU GLN SER SEQRES 2 B 454 GLN VAL SER PRO PRO PRO ASP THR LEU GLY ASP LYS SER SEQRES 3 B 454 LEU GLN LEU THR PHE PHE ASP PHE PHE TRP LEU ARG SER SEQRES 4 B 454 PRO PRO ILE ASN ASN LEU PHE PHE TYR GLU LEU PRO ILE SEQRES 5 B 454 THR ARG SER GLN PHE THR GLU THR VAL VAL PRO ASN ILE SEQRES 6 B 454 LYS HIS SER LEU SER ILE THR LEU LYS HIS PHE TYR PRO SEQRES 7 B 454 PHE VAL GLY LYS LEU VAL VAL TYR PRO ALA PRO THR LYS SEQRES 8 B 454 LYS PRO GLU ILE CYS TYR VAL GLU GLY ASP SER VAL ALA SEQRES 9 B 454 VAL THR PHE ALA GLU CYS ASN LEU ASP LEU ASN GLU LEU SEQRES 10 B 454 THR GLY ASN HIS PRO ARG ASN CYS ASP LYS PHE TYR ASP SEQRES 11 B 454 LEU VAL PRO ILE LEU GLY GLU SER THR ARG LEU SER ASP SEQRES 12 B 454 CYS ILE LYS ILE PRO LEU PHE SER VAL GLN VAL THR LEU SEQRES 13 B 454 PHE PRO ASN GLN GLY ILE ALA ILE GLY ILE THR ASN HIS SEQRES 14 B 454 HIS CYS LEU GLY ASP ALA SER THR ARG PHE CYS PHE LEU SEQRES 15 B 454 LYS ALA TRP THR SER ILE ALA ARG SER GLY ASN ASN ASP SEQRES 16 B 454 GLU SER PHE LEU ALA ASN GLY THR ARG PRO LEU TYR ASP SEQRES 17 B 454 ARG ILE ILE LYS TYR PRO MET LEU ASP GLU ALA TYR LEU SEQRES 18 B 454 LYS ARG ALA LYS VAL GLU SER PHE ASN GLU ASP TYR VAL SEQRES 19 B 454 THR GLN SER LEU ALA GLY PRO SER ASP LYS LEU ARG ALA SEQRES 20 B 454 THR PHE ILE LEU THR ARG ALA VAL ILE ASN GLN LEU LYS SEQRES 21 B 454 ASP ARG VAL LEU ALA GLN LEU PRO THR LEU GLU TYR VAL SEQRES 22 B 454 SER SER PHE THR VAL ALA CYS ALA TYR ILE TRP SER CYS SEQRES 23 B 454 ILE ALA LYS SER ARG ASN ASP LYS LEU GLN LEU PHE GLY SEQRES 24 B 454 PHE PRO ILE ASP ARG ARG ALA ARG MET LYS PRO PRO ILE SEQRES 25 B 454 PRO THR ALA TYR PHE GLY ASN CYS VAL GLY GLY CYS ALA SEQRES 26 B 454 ALA ILE ALA LYS THR ASN LEU LEU ILE GLY LYS GLU GLY SEQRES 27 B 454 PHE ILE THR ALA ALA LYS LEU ILE GLY GLU ASN LEU HIS SEQRES 28 B 454 LYS THR LEU THR ASP TYR LYS ASP GLY VAL LEU LYS ASP SEQRES 29 B 454 ASP MET GLU SER PHE ASN ASP LEU VAL SER GLU GLY MET SEQRES 30 B 454 PRO THR THR MET THR TRP VAL SER GLY THR PRO LYS LEU SEQRES 31 B 454 ARG PHE TYR ASP MET ASP PHE GLY TRP GLY LYS PRO LYS SEQRES 32 B 454 LYS LEU GLU THR VAL SER ILE ASP HIS ASN GLY ALA ILE SEQRES 33 B 454 SER ILE ASN SER CYS LYS GLU SER ASN GLU ASP LEU GLU SEQRES 34 B 454 ILE GLY VAL CYS ILE SER ALA THR GLN MET GLU ASP PHE SEQRES 35 B 454 VAL HIS ILE PHE ASP ASP GLY LEU LYS ALA TYR LEU HET MLC A1001 54 HET MLC B1002 54 HETNAM MLC MALONYL-COENZYME A FORMUL 3 MLC 2(C24 H38 N7 O19 P3 S) FORMUL 5 HOH *463(H2 O) HELIX 1 1 THR A 30 PHE A 35 1 6 HELIX 2 2 THR A 53 THR A 60 1 8 HELIX 3 3 THR A 60 PHE A 76 1 17 HELIX 4 4 TYR A 77 VAL A 80 5 4 HELIX 5 5 ASP A 113 LEU A 117 5 5 HELIX 6 6 ASP A 126 VAL A 132 5 7 HELIX 7 7 HIS A 170 GLY A 173 5 4 HELIX 8 8 ASP A 174 SER A 191 1 18 HELIX 9 9 ASP A 195 GLY A 202 1 8 HELIX 10 10 TYR A 213 LYS A 225 1 13 HELIX 11 11 LYS A 225 TYR A 233 1 9 HELIX 12 12 THR A 252 LEU A 267 1 16 HELIX 13 13 SER A 274 ASN A 292 1 19 HELIX 14 14 ARG A 305 MET A 308 5 4 HELIX 15 15 ASN A 331 LEU A 333 5 3 HELIX 16 16 ILE A 334 ASP A 359 1 26 HELIX 17 17 ASN A 370 GLY A 376 1 7 HELIX 18 18 ARG A 391 MET A 395 5 5 HELIX 19 19 SER A 409 ASN A 413 5 5 HELIX 20 20 ALA A 436 LEU A 450 1 15 HELIX 21 21 THR B 30 PHE B 35 1 6 HELIX 22 22 THR B 53 THR B 60 1 8 HELIX 23 23 THR B 60 PHE B 76 1 17 HELIX 24 24 TYR B 77 VAL B 80 5 4 HELIX 25 25 LEU B 114 GLY B 119 1 6 HELIX 26 26 ASP B 126 VAL B 132 5 7 HELIX 27 27 HIS B 170 GLY B 173 5 4 HELIX 28 28 ASP B 174 SER B 191 1 18 HELIX 29 29 ASP B 195 GLY B 202 1 8 HELIX 30 30 TYR B 213 ALA B 224 1 12 HELIX 31 31 SER B 228 TYR B 233 1 6 HELIX 32 32 THR B 252 LEU B 267 1 16 HELIX 33 33 SER B 274 ASN B 292 1 19 HELIX 34 34 ARG B 305 MET B 308 5 4 HELIX 35 35 ASN B 331 LEU B 333 5 3 HELIX 36 36 ILE B 334 ASP B 359 1 26 HELIX 37 37 ASN B 370 GLY B 376 1 7 HELIX 38 38 ARG B 391 MET B 395 5 5 HELIX 39 39 SER B 409 ASN B 413 5 5 HELIX 40 40 ALA B 436 GLY B 449 1 14 SHEET 1 A 6 LEU A 7 VAL A 15 0 SHEET 2 A 6 VAL A 103 CYS A 110 -1 O PHE A 107 N GLU A 11 SHEET 3 A 6 PHE A 150 PHE A 157 1 O LEU A 156 N ALA A 108 SHEET 4 A 6 GLY A 161 ASN A 168 -1 O GLY A 165 N GLN A 153 SHEET 5 A 6 ILE A 42 GLU A 49 -1 N ASN A 44 O ILE A 166 SHEET 6 A 6 LYS A 404 THR A 407 -1 O LYS A 404 N PHE A 47 SHEET 1 B 5 LYS A 25 GLN A 28 0 SHEET 2 B 5 GLU A 94 TYR A 97 -1 O TYR A 97 N LYS A 25 SHEET 3 B 5 LYS A 82 VAL A 85 -1 N VAL A 84 O GLU A 94 SHEET 4 B 5 ILE A 145 PRO A 148 -1 O ILE A 147 N LEU A 83 SHEET 5 B 5 THR A 139 ARG A 140 -1 N THR A 139 O LYS A 146 SHEET 1 C 7 ARG A 123 ASN A 124 0 SHEET 2 C 7 LYS A 244 LEU A 251 -1 O ARG A 246 N ARG A 123 SHEET 3 C 7 LEU A 428 SER A 435 -1 O ILE A 434 N LEU A 245 SHEET 4 C 7 ALA A 415 SER A 420 -1 N ASN A 419 O GLU A 429 SHEET 5 C 7 THR A 380 SER A 385 1 N SER A 385 O ILE A 416 SHEET 6 C 7 LEU A 295 ASP A 303 1 N GLY A 299 O THR A 382 SHEET 7 C 7 VAL A 321 LYS A 329 -1 O GLY A 322 N ILE A 302 SHEET 1 D 6 LEU B 7 VAL B 15 0 SHEET 2 D 6 VAL B 103 CYS B 110 -1 O VAL B 103 N VAL B 15 SHEET 3 D 6 PHE B 150 PHE B 157 1 O LEU B 156 N ALA B 108 SHEET 4 D 6 GLY B 161 ASN B 168 -1 O GLY B 165 N GLN B 153 SHEET 5 D 6 ILE B 42 GLU B 49 -1 N ASN B 44 O ILE B 166 SHEET 6 D 6 LYS B 404 THR B 407 -1 O LYS B 404 N PHE B 47 SHEET 1 E 5 LYS B 25 GLN B 28 0 SHEET 2 E 5 GLU B 94 TYR B 97 -1 O TYR B 97 N LYS B 25 SHEET 3 E 5 LYS B 82 VAL B 85 -1 N VAL B 84 O GLU B 94 SHEET 4 E 5 ILE B 145 PRO B 148 -1 O ILE B 147 N LEU B 83 SHEET 5 E 5 THR B 139 ARG B 140 -1 N THR B 139 O LYS B 146 SHEET 1 F 7 ARG B 123 ASN B 124 0 SHEET 2 F 7 LYS B 244 LEU B 251 -1 O ARG B 246 N ARG B 123 SHEET 3 F 7 LEU B 428 SER B 435 -1 O ILE B 430 N PHE B 249 SHEET 4 F 7 ALA B 415 SER B 420 -1 N ASN B 419 O GLU B 429 SHEET 5 F 7 THR B 380 SER B 385 1 N SER B 385 O ILE B 416 SHEET 6 F 7 LEU B 295 ASP B 303 1 N GLY B 299 O THR B 382 SHEET 7 F 7 VAL B 321 LYS B 329 -1 O GLY B 322 N ILE B 302 SSBOND 1 CYS A 125 CYS A 433 1555 1555 2.07 SSBOND 2 CYS B 125 CYS B 433 1555 1555 2.07 CISPEP 1 GLY A 240 PRO A 241 0 -5.08 CISPEP 2 LYS A 309 PRO A 310 0 1.18 CISPEP 3 GLY B 240 PRO B 241 0 -7.93 CISPEP 4 LYS B 309 PRO B 310 0 -2.92 SITE 1 AC1 25 HIS A 170 ALA A 175 ARG A 178 LYS A 260 SITE 2 AC1 25 GLU A 271 TYR A 272 VAL A 273 SER A 274 SITE 3 AC1 25 SER A 275 PHE A 276 PRO A 301 ILE A 302 SITE 4 AC1 25 ASP A 303 ARG A 307 GLY A 386 THR A 387 SITE 5 AC1 25 LYS A 389 HOH A1009 HOH A1039 HOH A1051 SITE 6 AC1 25 HOH A1052 HOH A1119 HOH A1122 HOH A1126 SITE 7 AC1 25 HOH A1177 SITE 1 AC2 28 HIS B 170 ASP B 174 ALA B 175 ARG B 178 SITE 2 AC2 28 LYS B 260 GLU B 271 TYR B 272 VAL B 273 SITE 3 AC2 28 SER B 274 SER B 275 PRO B 301 ILE B 302 SITE 4 AC2 28 ASP B 303 ARG B 307 VAL B 321 SER B 385 SITE 5 AC2 28 GLY B 386 THR B 387 LYS B 389 HOH B1012 SITE 6 AC2 28 HOH B1026 HOH B1046 HOH B1068 HOH B1073 SITE 7 AC2 28 HOH B1082 HOH B1175 HOH B1201 HOH B1205 CRYST1 52.646 122.922 69.848 90.00 94.16 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018995 0.000000 0.001381 0.00000 SCALE2 0.000000 0.008135 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014355 0.00000