HEADER PROTEIN TRANSPORT, CHAPERONE REGULATOR 19-NOV-06 2E2Z TITLE SOLUTION NMR STRUCTURE OF YEAST TIM15, CO-CHAPERONE OF MITOCHONDRIAL TITLE 2 HSP70 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TIM15; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TIM15 CORE DOMAIN; COMPND 5 SYNONYM: UNCHARACTERIZED PROTEIN YNL310C; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PROTEIN IMPORT, ZINC FINGER, PROTEIN TRANSPORT, CHAPERONE REGULATOR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.MOMOSE,C.OHSHIMA,M.MAEDA,T.ENDO REVDAT 3 09-MAR-22 2E2Z 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E2Z 1 VERSN REVDAT 1 09-OCT-07 2E2Z 0 JRNL AUTH T.MOMOSE,C.OHSHIMA,M.MAEDA,T.ENDO JRNL TITL STRUCTURAL BASIS OF FUNCTIONAL COOPERATION OF TIM15/ZIM17 JRNL TITL 2 WITH YEAST MITOCHONDRIAL HSP70 JRNL REF EMBO REP. V. 8 664 2007 JRNL REFN ISSN 1469-221X JRNL PMID 17571076 JRNL DOI 10.1038/SJ.EMBOR.7400990 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.4, CYANA 2.1 REMARK 3 AUTHORS : GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E2Z COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000026159. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 299 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 50MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1-2MM TIM15 U-15N, 13C; 20MM REMARK 210 ACETATE BUFFER, 50MM NACL, 10MM REMARK 210 DITIOTHREITOL, 0.03MM ZINC REMARK 210 ACETATE, ZINC SULFATE; 99.9% D2O; REMARK 210 1-2MM TIM15 U-15N; 20MM ACETATE REMARK 210 BUFFER,50MM NACL,10MM REMARK 210 DITIOTHREITOL, 0.03MM ZINC REMARK 210 ACETATE, ZINC SULFATE; 95% H2O,5% REMARK 210 D2O; 1-2MM TIM15; 20MM ACETATE REMARK 210 BUFFER, 50MM NACL, 10MM REMARK 210 DITIOTHREITOL, 0.03MM ZINC REMARK 210 ACETATE, ZINC SULFATE; 99.9% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, SPARKY 3.110 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 8 -174.49 -69.75 REMARK 500 1 PRO A 42 66.98 -69.74 REMARK 500 1 HIS A 43 -39.17 -172.30 REMARK 500 1 LYS A 45 80.25 37.49 REMARK 500 1 HIS A 60 44.47 32.14 REMARK 500 1 HIS A 61 16.46 -149.12 REMARK 500 1 GLU A 73 108.27 -51.95 REMARK 500 1 ASP A 78 -74.54 -88.09 REMARK 500 1 PRO A 88 -170.65 -69.80 REMARK 500 2 LYS A 7 70.70 51.81 REMARK 500 2 PRO A 42 66.84 -69.73 REMARK 500 2 HIS A 43 -69.35 -174.54 REMARK 500 2 LYS A 45 82.86 53.21 REMARK 500 2 VAL A 46 146.75 -175.79 REMARK 500 2 HIS A 60 49.87 33.14 REMARK 500 2 HIS A 61 12.00 -140.96 REMARK 500 2 PRO A 88 -169.05 -69.72 REMARK 500 3 VAL A 5 147.91 -175.36 REMARK 500 3 LYS A 7 159.15 61.44 REMARK 500 3 PRO A 8 -170.41 -69.79 REMARK 500 3 PRO A 42 67.15 -69.74 REMARK 500 3 HIS A 43 -68.69 -174.46 REMARK 500 3 LYS A 45 83.24 62.02 REMARK 500 3 VAL A 46 139.46 -175.96 REMARK 500 3 HIS A 60 49.90 33.37 REMARK 500 3 ASN A 71 -66.09 -101.98 REMARK 500 3 ASP A 86 96.54 -160.41 REMARK 500 3 PRO A 88 -170.25 -69.78 REMARK 500 4 PRO A 8 -177.39 -69.73 REMARK 500 4 PRO A 42 67.93 -69.76 REMARK 500 4 HIS A 43 -68.51 -175.00 REMARK 500 4 LYS A 45 81.64 58.15 REMARK 500 4 VAL A 46 147.20 -175.68 REMARK 500 4 HIS A 60 47.62 34.02 REMARK 500 4 ASN A 71 -71.08 -74.81 REMARK 500 4 PRO A 88 -170.20 -69.75 REMARK 500 5 ASP A 6 46.22 -101.98 REMARK 500 5 LYS A 7 73.80 -114.75 REMARK 500 5 PRO A 8 -175.92 -69.74 REMARK 500 5 ASN A 20 29.51 49.46 REMARK 500 5 HIS A 43 -71.13 -92.95 REMARK 500 5 LYS A 45 79.35 65.43 REMARK 500 5 VAL A 46 141.18 -175.73 REMARK 500 5 HIS A 60 49.75 33.20 REMARK 500 5 PRO A 88 -170.21 -69.75 REMARK 500 6 VAL A 5 73.29 -111.37 REMARK 500 6 LYS A 7 74.39 -158.16 REMARK 500 6 PRO A 8 -171.42 -69.71 REMARK 500 6 PRO A 42 66.50 -69.75 REMARK 500 6 HIS A 43 -75.61 -175.81 REMARK 500 REMARK 500 THIS ENTRY HAS 190 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 16 SG REMARK 620 2 CYS A 19 SG 110.6 REMARK 620 3 CYS A 41 SG 108.4 113.7 REMARK 620 4 CYS A 44 SG 114.1 103.1 107.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 DBREF 2E2Z A 5 100 UNP P42844 YN50_YEAST 95 190 SEQADV 2E2Z GLY A 1 UNP P42844 EXPRESSION TAG SEQADV 2E2Z SER A 2 UNP P42844 EXPRESSION TAG SEQADV 2E2Z HIS A 3 UNP P42844 EXPRESSION TAG SEQADV 2E2Z MET A 4 UNP P42844 EXPRESSION TAG SEQRES 1 A 100 GLY SER HIS MET VAL ASP LYS PRO LYS MET MET ILE ALA SEQRES 2 A 100 PHE THR CYS LYS LYS CYS ASN THR ARG SER SER HIS THR SEQRES 3 A 100 MET SER LYS GLN ALA TYR GLU LYS GLY THR VAL LEU ILE SEQRES 4 A 100 SER CYS PRO HIS CYS LYS VAL ARG HIS LEU ILE ALA ASP SEQRES 5 A 100 HIS LEU LYS ILE PHE HIS ASP HIS HIS VAL THR VAL GLU SEQRES 6 A 100 GLN LEU MET LYS ALA ASN GLY GLU GLN VAL SER GLN ASP SEQRES 7 A 100 VAL GLY ASP LEU GLU PHE GLU ASP ILE PRO ASP SER LEU SEQRES 8 A 100 LYS ASP VAL LEU GLY LYS TYR ALA LYS HET ZN A 101 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 LYS A 29 LYS A 34 1 6 HELIX 2 2 ILE A 56 HIS A 60 5 5 HELIX 3 3 THR A 63 GLY A 72 1 10 HELIX 4 4 PRO A 88 GLY A 96 1 9 SHEET 1 A 2 LYS A 9 CYS A 16 0 SHEET 2 A 2 THR A 21 SER A 28 -1 O THR A 21 N CYS A 16 SHEET 1 B 3 ARG A 47 LEU A 49 0 SHEET 2 B 3 THR A 36 SER A 40 -1 N ILE A 39 O HIS A 48 SHEET 3 B 3 ASP A 81 PHE A 84 -1 O PHE A 84 N THR A 36 LINK SG CYS A 16 ZN ZN A 101 1555 1555 2.52 LINK SG CYS A 19 ZN ZN A 101 1555 1555 2.37 LINK SG CYS A 41 ZN ZN A 101 1555 1555 2.41 LINK SG CYS A 44 ZN ZN A 101 1555 1555 2.27 SITE 1 AC1 4 CYS A 16 CYS A 19 CYS A 41 CYS A 44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1