HEADER ISOMERASE 11-DEC-06 2E4J TITLE SOLUTION STRUCTURE OF MOUSE LIPOCALIN-TYPE PROSTAGLANDIN D SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROSTAGLANDIN-H2 D-ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LIPOCALIN-TYPE PROSTAGLANDIN-D SYNTHASE, GLUTATHIONE- COMPND 5 INDEPENDENT PGD SYNTHETASE, PROSTAGLANDIN-D2 SYNTHASE, PGD2 SYNTHASE, COMPND 6 PGDS2, PGDS; COMPND 7 EC: 5.3.99.2; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGX-2T KEYWDS PGDS, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR S.SHIMAMOTO,T.OHKUBO REVDAT 4 29-MAY-24 2E4J 1 REMARK REVDAT 3 10-NOV-21 2E4J 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E4J 1 VERSN REVDAT 1 21-AUG-07 2E4J 0 JRNL AUTH S.SHIMAMOTO,T.OHKUBO JRNL TITL SOLUTION STRUCTURE OF MOUSE LIPOCALIN-TYPE PROSTAGLANDIN D JRNL TITL 2 SYNTHASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E4J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000026215. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 300MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PROTEIN U-15N, 13C; 50MM REMARK 210 PHOSPHATE BUFFER; 85% H2O, 15% REMARK 210 D2O; 1MM PROTEIN U-15N, 13C; REMARK 210 50MM PHOSPHATE BUFFER WITH 5MM 2- REMARK 210 MERCAPTOETHANOL; 99.9% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_ 13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 48 H VAL A 178 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 25 148.66 -173.73 REMARK 500 1 HIS A 27 -65.30 68.90 REMARK 500 1 ASN A 33 85.98 55.32 REMARK 500 1 ALA A 46 44.06 -178.75 REMARK 500 1 SER A 52 -169.86 52.38 REMARK 500 1 SER A 53 -46.82 -153.53 REMARK 500 1 GLU A 74 -74.42 64.17 REMARK 500 1 ASN A 87 -75.62 -79.70 REMARK 500 1 PRO A 102 89.86 -48.99 REMARK 500 1 SER A 108 -170.70 -69.92 REMARK 500 1 SER A 109 -56.27 -168.00 REMARK 500 1 PRO A 110 -160.92 -60.33 REMARK 500 1 SER A 112 89.27 -178.59 REMARK 500 1 SER A 114 72.07 40.13 REMARK 500 1 TYR A 125 -66.68 69.33 REMARK 500 1 ASP A 126 40.75 -154.40 REMARK 500 1 TYR A 128 83.08 61.57 REMARK 500 1 THR A 136 68.99 -166.04 REMARK 500 1 ASP A 142 77.93 64.63 REMARK 500 1 ARG A 151 48.18 -151.05 REMARK 500 1 THR A 154 -160.91 -115.07 REMARK 500 1 LEU A 172 -173.07 -173.70 REMARK 500 1 THR A 173 -161.62 -176.92 REMARK 500 1 PRO A 183 143.75 -30.85 REMARK 500 1 LYS A 185 92.01 32.89 REMARK 500 2 HIS A 27 33.99 -163.95 REMARK 500 2 THR A 29 -169.61 -56.50 REMARK 500 2 ALA A 46 45.27 -179.53 REMARK 500 2 ASN A 51 50.08 -90.71 REMARK 500 2 THR A 73 51.05 -114.91 REMARK 500 2 GLU A 74 -46.94 -152.61 REMARK 500 2 ASN A 87 36.91 -96.78 REMARK 500 2 GLN A 88 -165.06 78.19 REMARK 500 2 PRO A 102 90.21 -47.29 REMARK 500 2 PRO A 110 75.76 -62.51 REMARK 500 2 HIS A 111 12.28 -140.77 REMARK 500 2 SER A 112 84.21 47.59 REMARK 500 2 SER A 114 74.32 -66.49 REMARK 500 2 TYR A 125 -72.68 65.92 REMARK 500 2 ASP A 126 32.22 -147.01 REMARK 500 2 TYR A 128 85.42 56.67 REMARK 500 2 THR A 136 100.15 -160.01 REMARK 500 2 ASP A 142 84.09 52.38 REMARK 500 2 ARG A 151 34.16 -173.38 REMARK 500 2 THR A 154 -167.69 -114.31 REMARK 500 2 THR A 173 -165.25 -164.66 REMARK 500 3 THR A 29 176.64 -59.84 REMARK 500 3 ASN A 33 86.19 59.40 REMARK 500 3 ALA A 46 47.00 173.47 REMARK 500 3 GLU A 74 -74.16 64.29 REMARK 500 REMARK 500 THIS ENTRY HAS 350 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2E4J A 25 189 UNP O09114 PTGDS_MOUSE 25 189 SEQADV 2E4J GLY A 23 UNP O09114 EXPRESSION TAG SEQADV 2E4J SER A 24 UNP O09114 EXPRESSION TAG SEQADV 2E4J ALA A 89 UNP O09114 CYS 89 ENGINEERED MUTATION SEQADV 2E4J ALA A 186 UNP O09114 CYS 186 ENGINEERED MUTATION SEQRES 1 A 167 GLY SER GLN GLY HIS ASP THR VAL GLN PRO ASN PHE GLN SEQRES 2 A 167 GLN ASP LYS PHE LEU GLY ARG TRP TYR SER ALA GLY LEU SEQRES 3 A 167 ALA SER ASN SER SER TRP PHE ARG GLU LYS LYS ALA VAL SEQRES 4 A 167 LEU TYR MET CYS LYS THR VAL VAL ALA PRO SER THR GLU SEQRES 5 A 167 GLY GLY LEU ASN LEU THR SER THR PHE LEU ARG LYS ASN SEQRES 6 A 167 GLN ALA GLU THR LYS ILE MET VAL LEU GLN PRO ALA GLY SEQRES 7 A 167 ALA PRO GLY HIS TYR THR TYR SER SER PRO HIS SER GLY SEQRES 8 A 167 SER ILE HIS SER VAL SER VAL VAL GLU ALA ASN TYR ASP SEQRES 9 A 167 GLU TYR ALA LEU LEU PHE SER ARG GLY THR LYS GLY PRO SEQRES 10 A 167 GLY GLN ASP PHE ARG MET ALA THR LEU TYR SER ARG THR SEQRES 11 A 167 GLN THR LEU LYS ASP GLU LEU LYS GLU LYS PHE THR THR SEQRES 12 A 167 PHE SER LYS ALA GLN GLY LEU THR GLU GLU ASP ILE VAL SEQRES 13 A 167 PHE LEU PRO GLN PRO ASP LYS ALA ILE GLN GLU HELIX 1 1 GLN A 35 PHE A 39 5 5 HELIX 2 2 PHE A 55 ALA A 60 1 6 HELIX 3 3 LYS A 156 GLN A 170 1 15 HELIX 4 4 THR A 173 ILE A 177 5 5 SHEET 1 A 9 GLY A 41 ALA A 49 0 SHEET 2 A 9 MET A 64 VAL A 69 -1 O THR A 67 N TRP A 43 SHEET 3 A 9 LEU A 77 LEU A 84 -1 O LEU A 84 N MET A 64 SHEET 4 A 9 ALA A 89 PRO A 98 -1 O LEU A 96 N LEU A 77 SHEET 5 A 9 HIS A 104 THR A 106 -1 O THR A 106 N GLN A 97 SHEET 6 A 9 ILE A 115 ALA A 123 -1 O VAL A 118 N TYR A 105 SHEET 7 A 9 ALA A 129 THR A 136 -1 O LEU A 130 N VAL A 121 SHEET 8 A 9 MET A 145 SER A 150 -1 O THR A 147 N LEU A 131 SHEET 9 A 9 GLY A 41 ALA A 49 -1 N GLY A 47 O LEU A 148 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1