HEADER HYDROLASE 16-DEC-06 2E4T TITLE CRYSTAL STRUCTURE OF CEL44A, GH FAMILY 44 ENDOGLUCANASE FROM TITLE 2 CLOSTRIDIUM THERMOCELLUM CAVEAT 2E4T CHIRALITY ERROR AT CB CENTER OF THR A 426 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOGLUCANASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CEL44A; COMPND 5 SYNONYM: XYLOGLUCANASE; COMPND 6 EC: 3.2.1.4, 3.2.1.151; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 1515; SOURCE 4 STRAIN: F1; SOURCE 5 GENE: CELJ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE-30 KEYWDS TIM BARREL, TIM-LIKE BARREL, COMPOSITE DOMAIN OF GLYCOSYL HYDROLASE KEYWDS 2 FAMILIES 5, 30, 39 AND 51, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KITAGO,S.KARITA,N.WATANABE,K.SAKKA,I.TANAKA REVDAT 5 13-MAR-24 2E4T 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2E4T 1 VERSN REVDAT 3 21-JUL-09 2E4T 1 JRNL REVDAT 2 24-FEB-09 2E4T 1 VERSN REVDAT 1 18-SEP-07 2E4T 0 JRNL AUTH Y.KITAGO,S.KARITA,N.WATANABE,M.KAMIYA,T.AIZAWA,K.SAKKA, JRNL AUTH 2 I.TANAKA JRNL TITL CRYSTAL STRUCTURE OF CEL44A, A GLYCOSIDE HYDROLASE FAMILY 44 JRNL TITL 2 ENDOGLUCANASE FROM CLOSTRIDIUM THERMOCELLUM. JRNL REF J.BIOL.CHEM. V. 282 35703 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17905739 JRNL DOI 10.1074/JBC.M706835200 REMARK 2 REMARK 2 RESOLUTION. 0.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 277615 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.133 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 14789 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 18219 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 1027 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4012 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 574 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.018 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.019 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.011 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.408 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4243 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5779 ; 1.788 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 508 ; 6.166 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;35.121 ;24.856 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 731 ;12.878 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;10.820 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 602 ; 0.225 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3279 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2024 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2961 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 472 ; 0.112 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.064 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.138 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.075 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.032 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2564 ; 1.452 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4115 ; 2.032 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1928 ; 2.907 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1644 ; 3.859 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4492 ; 1.514 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 577 ; 9.999 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4121 ; 3.843 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 THE POSITION OF THE CB ATOM OF THR426 MUST BE CORRECT IN THE REMARK 3 ELECTRON DENSITY MAP. AND THE AUTHOR BELEIVES THAT THE 2FO-FC REMARK 3 ELECTRON DENSITY MAP AND THE MODEL FIT WELL WITH EACH OTHER AND REMARK 3 RELIABLE BECAUSE OF THE RESOLUTION 0.96A AND THE FREE R VALUE. REMARK 4 REMARK 4 2E4T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026225. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000, 1.2824, 0.9800 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 292562 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.960 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12700 REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37500 REMARK 200 FOR SHELL : 2.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 3350, 0.1M MES-NAOH PH 5.8, REMARK 280 6MM ZNSO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.03850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.34200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.57750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.34200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.03850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.57750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 SER A 4 REMARK 465 GLU A 5 REMARK 465 PRO A 6 REMARK 465 ALA A 516 REMARK 465 ALA A 517 REMARK 465 GLU A 518 REMARK 465 PRO A 519 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 206 O HOH A 1883 1.78 REMARK 500 O HOH A 1997 O HOH A 2087 1.95 REMARK 500 O HOH A 2129 O HOH A 2132 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 196 CD ARG A 196 NE 0.189 REMARK 500 ARG A 196 NE ARG A 196 CZ 0.107 REMARK 500 CYS A 510 CB CYS A 510 SG -0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 21 CA - CB - CG ANGL. DEV. = 20.2 DEGREES REMARK 500 ARG A 42 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 PHE A 161 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 196 CD - NE - CZ ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG A 196 NE - CZ - NH1 ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 196 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 196 NE - CZ - NH2 ANGL. DEV. = -9.8 DEGREES REMARK 500 TYR A 238 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR A 238 CB - CG - CD1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ASP A 376 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 CYS A 510 CB - CA - C ANGL. DEV. = 8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 28 45.21 -101.84 REMARK 500 TRP A 64 80.08 -160.03 REMARK 500 ASP A 184 -152.03 61.22 REMARK 500 PHE A 297 76.55 66.01 REMARK 500 TYR A 350 72.20 -154.66 REMARK 500 ASP A 361 118.93 -167.78 REMARK 500 ASN A 409 66.42 -167.80 REMARK 500 ASP A 456 27.97 -141.76 REMARK 500 ASN A 494 78.29 -102.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 700 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 35 OD2 REMARK 620 2 GLU A 126 OE2 111.8 REMARK 620 3 GLU A 126 OE1 81.2 52.4 REMARK 620 4 ALA A 395 O 105.8 94.6 145.2 REMARK 620 5 GLU A 401 OE1 126.0 104.3 91.0 110.0 REMARK 620 6 GLU A 401 OE2 89.9 156.6 126.8 87.7 53.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 54 OE1 REMARK 620 2 GLU A 54 OE2 53.0 REMARK 620 3 ASP A 150 O 81.7 103.4 REMARK 620 4 ASP A 153 OD1 144.8 162.0 81.3 REMARK 620 5 TYR A 155 O 112.6 91.9 163.7 82.4 REMARK 620 6 HOH A1660 O 75.0 122.1 90.8 74.7 85.8 REMARK 620 7 HOH A1673 O 130.2 82.8 88.9 80.0 87.4 154.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2E0P RELATED DB: PDB REMARK 900 WILD TYPE COMPLEXED WITH CELLOPENTAOSE DBREF 2E4T A 5 519 UNP P71140 P71140_CLOTM 773 1287 SEQADV 2E4T GLY A 1 UNP P71140 EXPRESSION TAG SEQADV 2E4T SER A 2 UNP P71140 EXPRESSION TAG SEQADV 2E4T ARG A 3 UNP P71140 EXPRESSION TAG SEQADV 2E4T SER A 4 UNP P71140 EXPRESSION TAG SEQRES 1 A 519 GLY SER ARG SER GLU PRO ALA LYS VAL VAL ASP ILE ARG SEQRES 2 A 519 ILE ASP THR SER ALA GLU ARG LYS PRO ILE SER PRO TYR SEQRES 3 A 519 ILE TYR GLY SER ASN GLN GLU LEU ASP ALA THR VAL THR SEQRES 4 A 519 ALA LYS ARG PHE GLY GLY ASN ARG THR THR GLY TYR ASN SEQRES 5 A 519 TRP GLU ASN ASN PHE SER ASN ALA GLY SER ASP TRP LEU SEQRES 6 A 519 HIS TYR SER ASP THR TYR LEU LEU GLU ASP GLY GLY VAL SEQRES 7 A 519 PRO LYS GLY GLU TRP SER THR PRO ALA SER VAL VAL THR SEQRES 8 A 519 THR PHE HIS ASP LYS ALA LEU SER LYS ASN VAL PRO TYR SEQRES 9 A 519 THR LEU ILE THR LEU GLN ALA ALA GLY TYR VAL SER ALA SEQRES 10 A 519 ASP GLY ASN GLY PRO VAL SER GLN GLU GLU THR ALA PRO SEQRES 11 A 519 SER SER ARG TRP LYS GLU VAL LYS PHE GLU LYS GLY ALA SEQRES 12 A 519 PRO PHE SER LEU THR PRO ASP THR GLU ASP ASP TYR VAL SEQRES 13 A 519 TYR MET ASP GLU PHE VAL ASN TYR LEU VAL ASN LYS TYR SEQRES 14 A 519 GLY ASN ALA SER THR PRO THR GLY ILE LYS GLY TYR SER SEQRES 15 A 519 ILE ASP ASN GLU PRO ALA LEU TRP SER HIS THR HIS PRO SEQRES 16 A 519 ARG ILE HIS PRO ASP ASN VAL THR ALA LYS GLU LEU ILE SEQRES 17 A 519 GLU LYS SER VAL ALA LEU SER LYS ALA VAL LYS LYS VAL SEQRES 18 A 519 ASP PRO TYR ALA GLU ILE PHE GLY PRO ALA LEU TYR GLY SEQRES 19 A 519 PHE ALA ALA TYR GLU THR LEU GLN SER ALA PRO ASP TRP SEQRES 20 A 519 GLY THR GLU GLY GLU GLY TYR ARG TRP PHE ILE ASP TYR SEQRES 21 A 519 TYR LEU ASP LYS MET LYS LYS ALA SER ASP GLU GLU GLY SEQRES 22 A 519 LYS ARG LEU LEU ASP VAL LEU ASP VAL HIS TRP TYR PRO SEQRES 23 A 519 GLU ALA ARG GLY GLY GLY GLU ARG ILE CYS PHE GLY ALA SEQRES 24 A 519 ASP PRO ARG ASN ILE GLU THR ASN LYS ALA ARG LEU GLN SEQRES 25 A 519 ALA PRO ARG THR LEU TRP ASP PRO THR TYR ILE GLU ASP SEQRES 26 A 519 SER TRP ILE GLY GLN TRP LYS LYS ASP PHE LEU PRO ILE SEQRES 27 A 519 LEU PRO ASN LEU LEU ASP SER ILE GLU LYS TYR TYR PRO SEQRES 28 A 519 GLY THR LYS LEU ALA ILE THR GLU TYR ASP TYR GLY GLY SEQRES 29 A 519 GLY ASN HIS ILE THR GLY GLY ILE ALA GLN ALA ASP VAL SEQRES 30 A 519 LEU GLY ILE PHE GLY LYS TYR GLY VAL TYR LEU ALA THR SEQRES 31 A 519 PHE TRP GLY ASP ALA SER ASN ASN TYR THR GLU ALA GLY SEQRES 32 A 519 ILE ASN LEU TYR THR ASN TYR ASP GLY LYS GLY GLY LYS SEQRES 33 A 519 PHE GLY ASP THR SER VAL LYS CYS GLU THR SER ASP ILE SEQRES 34 A 519 GLU VAL SER SER ALA TYR ALA SER ILE VAL GLY GLU ASP SEQRES 35 A 519 ASP SER LYS LEU HIS ILE ILE LEU LEU ASN LYS ASN TYR SEQRES 36 A 519 ASP GLN PRO THR THR PHE ASN PHE SER ILE ASP SER SER SEQRES 37 A 519 LYS ASN TYR THR ILE GLY ASN VAL TRP ALA PHE ASP ARG SEQRES 38 A 519 GLY SER SER ASN ILE THR GLN ARG THR PRO ILE VAL ASN SEQRES 39 A 519 ILE LYS ASP ASN THR PHE THR TYR THR VAL PRO ALA LEU SEQRES 40 A 519 THR ALA CYS HIS ILE VAL LEU GLU ALA ALA GLU PRO HET ZN A 700 1 HET CA A 701 1 HET CL A 702 1 HET GOL A1600 6 HET GOL A1601 6 HET GOL A1602 6 HET GOL A1603 6 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 CA CA 2+ FORMUL 4 CL CL 1- FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 HOH *574(H2 O) HELIX 1 1 GLY A 45 THR A 49 5 5 HELIX 2 2 GLY A 61 TRP A 64 5 4 HELIX 3 3 THR A 70 GLY A 76 1 7 HELIX 4 4 PRO A 79 TRP A 83 5 5 HELIX 5 5 ALA A 87 LYS A 100 1 14 HELIX 6 6 SER A 124 THR A 128 5 5 HELIX 7 7 MET A 158 GLY A 170 1 13 HELIX 8 8 GLU A 186 ALA A 188 5 3 HELIX 9 9 LEU A 189 HIS A 194 1 6 HELIX 10 10 THR A 203 ASP A 222 1 20 HELIX 11 11 GLY A 234 LEU A 241 1 8 HELIX 12 12 ASP A 246 GLY A 251 1 6 HELIX 13 13 TRP A 256 GLY A 273 1 18 HELIX 14 14 ASN A 303 ALA A 313 1 11 HELIX 15 15 PRO A 314 TRP A 318 5 5 HELIX 16 16 SER A 326 LYS A 332 1 7 HELIX 17 17 LYS A 333 LEU A 336 5 4 HELIX 18 18 PRO A 337 TYR A 350 1 14 HELIX 19 19 HIS A 367 GLY A 385 1 19 HELIX 20 20 ASN A 397 ASN A 409 1 13 SHEET 1 A 7 LYS A 21 PRO A 22 0 SHEET 2 A 7 THR A 420 THR A 426 -1 O SER A 421 N LYS A 21 SHEET 3 A 7 SER A 432 VAL A 439 -1 O ILE A 438 N THR A 420 SHEET 4 A 7 ASP A 442 ASN A 452 -1 O HIS A 447 N SER A 437 SHEET 5 A 7 THR A 508 GLU A 515 -1 O LEU A 514 N LEU A 446 SHEET 6 A 7 ILE A 473 ASP A 480 -1 N TRP A 477 O HIS A 511 SHEET 7 A 7 SER A 483 ILE A 492 -1 O ARG A 489 N VAL A 476 SHEET 1 B 5 LYS A 21 PRO A 22 0 SHEET 2 B 5 THR A 420 THR A 426 -1 O SER A 421 N LYS A 21 SHEET 3 B 5 LYS A 8 ASP A 15 -1 N ARG A 13 O GLU A 425 SHEET 4 B 5 THR A 459 ASP A 466 1 O THR A 460 N LYS A 8 SHEET 5 B 5 THR A 499 VAL A 504 -1 O PHE A 500 N PHE A 463 SHEET 1 C 9 TYR A 26 SER A 30 0 SHEET 2 C 9 ALA A 40 PHE A 43 1 O ALA A 40 N SER A 30 SHEET 3 C 9 TYR A 104 LEU A 109 1 O LEU A 106 N PHE A 43 SHEET 4 C 9 GLY A 180 ILE A 183 1 O SER A 182 N LEU A 109 SHEET 5 C 9 GLU A 226 LEU A 232 1 O GLU A 226 N TYR A 181 SHEET 6 C 9 VAL A 279 TRP A 284 1 O HIS A 283 N LEU A 232 SHEET 7 C 9 LYS A 354 TYR A 360 1 O LYS A 354 N LEU A 280 SHEET 8 C 9 LEU A 388 PHE A 391 1 O THR A 390 N ILE A 357 SHEET 9 C 9 TYR A 26 SER A 30 1 N GLY A 29 O PHE A 391 SHEET 1 D 3 SER A 58 ASN A 59 0 SHEET 2 D 3 TYR A 67 ASP A 69 -1 O ASP A 69 N SER A 58 SHEET 3 D 3 GLY A 121 PRO A 122 -1 O GLY A 121 N SER A 68 SHEET 1 E 3 TYR A 114 SER A 116 0 SHEET 2 E 3 TRP A 134 LYS A 138 -1 O LYS A 135 N VAL A 115 SHEET 3 E 3 TYR A 155 TYR A 157 1 O VAL A 156 N LYS A 138 SHEET 1 F 2 ARG A 289 GLY A 290 0 SHEET 2 F 2 GLU A 293 ARG A 294 -1 O GLU A 293 N GLY A 290 LINK OD2 ASP A 35 ZN ZN A 700 1555 1555 1.96 LINK OE1 GLU A 54 CA CA A 701 1555 1555 2.52 LINK OE2 GLU A 54 CA CA A 701 1555 1555 2.45 LINK OE2 GLU A 126 ZN ZN A 700 4565 1555 1.99 LINK OE1 GLU A 126 ZN ZN A 700 4565 1555 2.75 LINK O ASP A 150 CA CA A 701 1555 1555 2.33 LINK OD1 ASP A 153 CA CA A 701 1555 1555 2.40 LINK O TYR A 155 CA CA A 701 1555 1555 2.32 LINK O ALA A 395 ZN ZN A 700 1555 1555 1.99 LINK OE1 GLU A 401 ZN ZN A 700 1555 1555 1.94 LINK OE2 GLU A 401 ZN ZN A 700 1555 1555 2.73 LINK CA CA A 701 O HOH A1660 1555 1555 2.39 LINK CA CA A 701 O HOH A1673 1555 1555 2.38 CISPEP 1 ALA A 129 PRO A 130 0 -3.66 CISPEP 2 GLY A 229 PRO A 230 0 6.21 CISPEP 3 LEU A 336 PRO A 337 0 0.37 SITE 1 AC1 4 ASP A 35 GLU A 126 ALA A 395 GLU A 401 SITE 1 AC2 6 GLU A 54 ASP A 150 ASP A 153 TYR A 155 SITE 2 AC2 6 HOH A1660 HOH A1673 SITE 1 AC3 5 GLU A 186 PRO A 187 ALA A 188 LEU A 232 SITE 2 AC3 5 TYR A 233 SITE 1 AC4 9 GLU A 33 LEU A 34 LYS A 41 LYS A 96 SITE 2 AC4 9 ALA A 97 HOH A1619 HOH A1633 HOH A1648 SITE 3 AC4 9 HOH A1760 SITE 1 AC5 8 ASN A 31 ARG A 42 PHE A 43 GLY A 44 SITE 2 AC5 8 THR A 48 HOH A1744 HOH A1813 HOH A1830 SITE 1 AC6 10 ASP A 35 GLU A 126 ASN A 398 GLU A 401 SITE 2 AC6 10 ALA A 402 ASN A 405 SER A 484 HOH A1671 SITE 3 AC6 10 HOH A1719 HOH A1782 SITE 1 AC7 7 GLU A 136 LYS A 138 PHE A 145 TYR A 155 SITE 2 AC7 7 ASN A 163 HOH A1871 HOH A2099 CRYST1 48.077 59.155 170.684 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020800 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005859 0.00000