data_2E56 # _entry.id 2E56 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2E56 pdb_00002e56 10.2210/pdb2e56/pdb RCSB RCSB026238 ? ? WWPDB D_1000026238 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-06-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 1 4 2024-11-06 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' pdbx_chem_comp_identifier 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 4 'Structure model' struct_site_gen 8 5 'Structure model' chem_comp 9 5 'Structure model' chem_comp_atom 10 5 'Structure model' chem_comp_bond 11 5 'Structure model' database_2 12 5 'Structure model' pdbx_entry_details 13 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_conn.pdbx_role' 7 5 'Structure model' '_chem_comp.pdbx_synonyms' 8 5 'Structure model' '_database_2.pdbx_DOI' 9 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2E56 _pdbx_database_status.recvd_initial_deposition_date 2006-12-19 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2E59 _pdbx_database_related.details 'the same protein in complex with lipid IVa' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ohto, U.' 1 'Satow, Y.' 2 # _citation.id primary _citation.title 'Crystal structures of human MD-2 and its complex with antiendotoxic lipid IVa.' _citation.journal_abbrev Science _citation.journal_volume 316 _citation.page_first 1632 _citation.page_last 1634 _citation.year 2007 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17569869 _citation.pdbx_database_id_DOI 10.1126/science.1139111 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ohto, U.' 1 ? primary 'Fukase, K.' 2 ? primary 'Miyake, K.' 3 ? primary 'Satow, Y.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lymphocyte antigen 96' 16586.135 1 ? ? ? ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? 3 non-polymer syn 'MYRISTIC ACID' 228.371 3 ? ? ? ? 4 water nat water 18.015 143 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'MD-2 protein, ESOP-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGLLHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICR GSDDDYSFCRALKGETVNTTISFSFKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN ; _entity_poly.pdbx_seq_one_letter_code_can ;EAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGLLHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICR GSDDDYSFCRALKGETVNTTISFSFKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 3 'MYRISTIC ACID' MYR 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ALA n 1 3 GLN n 1 4 LYS n 1 5 GLN n 1 6 TYR n 1 7 TRP n 1 8 VAL n 1 9 CYS n 1 10 ASN n 1 11 SER n 1 12 SER n 1 13 ASP n 1 14 ALA n 1 15 SER n 1 16 ILE n 1 17 SER n 1 18 TYR n 1 19 THR n 1 20 TYR n 1 21 CYS n 1 22 ASP n 1 23 LYS n 1 24 MET n 1 25 GLN n 1 26 TYR n 1 27 PRO n 1 28 ILE n 1 29 SER n 1 30 ILE n 1 31 ASN n 1 32 VAL n 1 33 ASN n 1 34 PRO n 1 35 CYS n 1 36 ILE n 1 37 GLU n 1 38 LEU n 1 39 LYS n 1 40 GLY n 1 41 SER n 1 42 LYS n 1 43 GLY n 1 44 LEU n 1 45 LEU n 1 46 HIS n 1 47 ILE n 1 48 PHE n 1 49 TYR n 1 50 ILE n 1 51 PRO n 1 52 ARG n 1 53 ARG n 1 54 ASP n 1 55 LEU n 1 56 LYS n 1 57 GLN n 1 58 LEU n 1 59 TYR n 1 60 PHE n 1 61 ASN n 1 62 LEU n 1 63 TYR n 1 64 ILE n 1 65 THR n 1 66 VAL n 1 67 ASN n 1 68 THR n 1 69 MET n 1 70 ASN n 1 71 LEU n 1 72 PRO n 1 73 LYS n 1 74 ARG n 1 75 LYS n 1 76 GLU n 1 77 VAL n 1 78 ILE n 1 79 CYS n 1 80 ARG n 1 81 GLY n 1 82 SER n 1 83 ASP n 1 84 ASP n 1 85 ASP n 1 86 TYR n 1 87 SER n 1 88 PHE n 1 89 CYS n 1 90 ARG n 1 91 ALA n 1 92 LEU n 1 93 LYS n 1 94 GLY n 1 95 GLU n 1 96 THR n 1 97 VAL n 1 98 ASN n 1 99 THR n 1 100 THR n 1 101 ILE n 1 102 SER n 1 103 PHE n 1 104 SER n 1 105 PHE n 1 106 LYS n 1 107 GLY n 1 108 ILE n 1 109 LYS n 1 110 PHE n 1 111 SER n 1 112 LYS n 1 113 GLY n 1 114 LYS n 1 115 TYR n 1 116 LYS n 1 117 CYS n 1 118 VAL n 1 119 VAL n 1 120 GLU n 1 121 ALA n 1 122 ILE n 1 123 SER n 1 124 GLY n 1 125 SER n 1 126 PRO n 1 127 GLU n 1 128 GLU n 1 129 MET n 1 130 LEU n 1 131 PHE n 1 132 CYS n 1 133 LEU n 1 134 GLU n 1 135 PHE n 1 136 VAL n 1 137 ILE n 1 138 LEU n 1 139 HIS n 1 140 GLN n 1 141 PRO n 1 142 ASN n 1 143 SER n 1 144 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'LY96, ESOP1, MD2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus Pichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pPIC9, pPICZa, pPIC6a' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MYR non-polymer . 'MYRISTIC ACID' ? 'C14 H28 O2' 228.371 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 17 17 GLU GLU A . n A 1 2 ALA 2 18 18 ALA ALA A . n A 1 3 GLN 3 19 19 GLN GLN A . n A 1 4 LYS 4 20 20 LYS LYS A . n A 1 5 GLN 5 21 21 GLN GLN A . n A 1 6 TYR 6 22 22 TYR TYR A . n A 1 7 TRP 7 23 23 TRP TRP A . n A 1 8 VAL 8 24 24 VAL VAL A . n A 1 9 CYS 9 25 25 CYS CYS A . n A 1 10 ASN 10 26 26 ASN ASN A . n A 1 11 SER 11 27 27 SER SER A . n A 1 12 SER 12 28 28 SER SER A . n A 1 13 ASP 13 29 29 ASP ASP A . n A 1 14 ALA 14 30 30 ALA ALA A . n A 1 15 SER 15 31 31 SER SER A . n A 1 16 ILE 16 32 32 ILE ILE A . n A 1 17 SER 17 33 33 SER SER A . n A 1 18 TYR 18 34 34 TYR TYR A . n A 1 19 THR 19 35 35 THR THR A . n A 1 20 TYR 20 36 36 TYR TYR A . n A 1 21 CYS 21 37 37 CYS CYS A . n A 1 22 ASP 22 38 38 ASP ASP A . n A 1 23 LYS 23 39 39 LYS LYS A . n A 1 24 MET 24 40 40 MET MET A . n A 1 25 GLN 25 41 41 GLN GLN A . n A 1 26 TYR 26 42 42 TYR TYR A . n A 1 27 PRO 27 43 43 PRO PRO A . n A 1 28 ILE 28 44 44 ILE ILE A . n A 1 29 SER 29 45 45 SER SER A . n A 1 30 ILE 30 46 46 ILE ILE A . n A 1 31 ASN 31 47 47 ASN ASN A . n A 1 32 VAL 32 48 48 VAL VAL A . n A 1 33 ASN 33 49 49 ASN ASN A . n A 1 34 PRO 34 50 50 PRO PRO A . n A 1 35 CYS 35 51 51 CYS CYS A . n A 1 36 ILE 36 52 52 ILE ILE A . n A 1 37 GLU 37 53 53 GLU GLU A . n A 1 38 LEU 38 54 54 LEU LEU A . n A 1 39 LYS 39 55 55 LYS LYS A . n A 1 40 GLY 40 56 56 GLY GLY A . n A 1 41 SER 41 57 57 SER SER A . n A 1 42 LYS 42 58 58 LYS LYS A . n A 1 43 GLY 43 59 59 GLY GLY A . n A 1 44 LEU 44 60 60 LEU LEU A . n A 1 45 LEU 45 61 61 LEU LEU A . n A 1 46 HIS 46 62 62 HIS HIS A . n A 1 47 ILE 47 63 63 ILE ILE A . n A 1 48 PHE 48 64 64 PHE PHE A . n A 1 49 TYR 49 65 65 TYR TYR A . n A 1 50 ILE 50 66 66 ILE ILE A . n A 1 51 PRO 51 67 67 PRO PRO A . n A 1 52 ARG 52 68 68 ARG ARG A . n A 1 53 ARG 53 69 69 ARG ARG A . n A 1 54 ASP 54 70 70 ASP ASP A . n A 1 55 LEU 55 71 71 LEU LEU A . n A 1 56 LYS 56 72 72 LYS LYS A . n A 1 57 GLN 57 73 73 GLN GLN A . n A 1 58 LEU 58 74 74 LEU LEU A . n A 1 59 TYR 59 75 75 TYR TYR A . n A 1 60 PHE 60 76 76 PHE PHE A . n A 1 61 ASN 61 77 77 ASN ASN A . n A 1 62 LEU 62 78 78 LEU LEU A . n A 1 63 TYR 63 79 79 TYR TYR A . n A 1 64 ILE 64 80 80 ILE ILE A . n A 1 65 THR 65 81 81 THR THR A . n A 1 66 VAL 66 82 82 VAL VAL A . n A 1 67 ASN 67 83 83 ASN ASN A . n A 1 68 THR 68 84 84 THR THR A . n A 1 69 MET 69 85 85 MET MET A . n A 1 70 ASN 70 86 86 ASN ASN A . n A 1 71 LEU 71 87 87 LEU LEU A . n A 1 72 PRO 72 88 88 PRO PRO A . n A 1 73 LYS 73 89 89 LYS LYS A . n A 1 74 ARG 74 90 90 ARG ARG A . n A 1 75 LYS 75 91 91 LYS LYS A . n A 1 76 GLU 76 92 92 GLU GLU A . n A 1 77 VAL 77 93 93 VAL VAL A . n A 1 78 ILE 78 94 94 ILE ILE A . n A 1 79 CYS 79 95 95 CYS CYS A . n A 1 80 ARG 80 96 96 ARG ARG A . n A 1 81 GLY 81 97 97 GLY GLY A . n A 1 82 SER 82 98 98 SER SER A . n A 1 83 ASP 83 99 99 ASP ASP A . n A 1 84 ASP 84 100 100 ASP ASP A . n A 1 85 ASP 85 101 101 ASP ASP A . n A 1 86 TYR 86 102 102 TYR TYR A . n A 1 87 SER 87 103 103 SER SER A . n A 1 88 PHE 88 104 104 PHE PHE A . n A 1 89 CYS 89 105 105 CYS CYS A . n A 1 90 ARG 90 106 106 ARG ARG A . n A 1 91 ALA 91 107 107 ALA ALA A . n A 1 92 LEU 92 108 108 LEU LEU A . n A 1 93 LYS 93 109 109 LYS LYS A . n A 1 94 GLY 94 110 110 GLY GLY A . n A 1 95 GLU 95 111 111 GLU GLU A . n A 1 96 THR 96 112 112 THR THR A . n A 1 97 VAL 97 113 113 VAL VAL A . n A 1 98 ASN 98 114 114 ASN ASN A . n A 1 99 THR 99 115 115 THR THR A . n A 1 100 THR 100 116 116 THR THR A . n A 1 101 ILE 101 117 117 ILE ILE A . n A 1 102 SER 102 118 118 SER SER A . n A 1 103 PHE 103 119 119 PHE PHE A . n A 1 104 SER 104 120 120 SER SER A . n A 1 105 PHE 105 121 121 PHE PHE A . n A 1 106 LYS 106 122 122 LYS LYS A . n A 1 107 GLY 107 123 123 GLY GLY A . n A 1 108 ILE 108 124 124 ILE ILE A . n A 1 109 LYS 109 125 125 LYS LYS A . n A 1 110 PHE 110 126 126 PHE PHE A . n A 1 111 SER 111 127 127 SER SER A . n A 1 112 LYS 112 128 128 LYS LYS A . n A 1 113 GLY 113 129 129 GLY GLY A . n A 1 114 LYS 114 130 130 LYS LYS A . n A 1 115 TYR 115 131 131 TYR TYR A . n A 1 116 LYS 116 132 132 LYS LYS A . n A 1 117 CYS 117 133 133 CYS CYS A . n A 1 118 VAL 118 134 134 VAL VAL A . n A 1 119 VAL 119 135 135 VAL VAL A . n A 1 120 GLU 120 136 136 GLU GLU A . n A 1 121 ALA 121 137 137 ALA ALA A . n A 1 122 ILE 122 138 138 ILE ILE A . n A 1 123 SER 123 139 139 SER SER A . n A 1 124 GLY 124 140 140 GLY GLY A . n A 1 125 SER 125 141 141 SER SER A . n A 1 126 PRO 126 142 142 PRO PRO A . n A 1 127 GLU 127 143 143 GLU GLU A . n A 1 128 GLU 128 144 144 GLU GLU A . n A 1 129 MET 129 145 145 MET MET A . n A 1 130 LEU 130 146 146 LEU LEU A . n A 1 131 PHE 131 147 147 PHE PHE A . n A 1 132 CYS 132 148 148 CYS CYS A . n A 1 133 LEU 133 149 149 LEU LEU A . n A 1 134 GLU 134 150 150 GLU GLU A . n A 1 135 PHE 135 151 151 PHE PHE A . n A 1 136 VAL 136 152 152 VAL VAL A . n A 1 137 ILE 137 153 153 ILE ILE A . n A 1 138 LEU 138 154 154 LEU LEU A . n A 1 139 HIS 139 155 155 HIS HIS A . n A 1 140 GLN 140 156 156 GLN GLN A . n A 1 141 PRO 141 157 157 PRO PRO A . n A 1 142 ASN 142 158 158 ASN ASN A . n A 1 143 SER 143 159 159 SER SER A . n A 1 144 ASN 144 160 160 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 801 1 NAG NAG A . C 2 NAG 1 901 1 NAG NAG A . D 3 MYR 1 501 1 MYR MYR A . E 3 MYR 1 601 1 MYR MYR A . F 3 MYR 1 701 1 MYR MYR A . G 4 HOH 1 902 1 HOH HOH A . G 4 HOH 2 903 2 HOH HOH A . G 4 HOH 3 904 3 HOH HOH A . G 4 HOH 4 905 4 HOH HOH A . G 4 HOH 5 906 5 HOH HOH A . G 4 HOH 6 907 6 HOH HOH A . G 4 HOH 7 908 7 HOH HOH A . G 4 HOH 8 909 8 HOH HOH A . G 4 HOH 9 910 9 HOH HOH A . G 4 HOH 10 911 10 HOH HOH A . G 4 HOH 11 912 11 HOH HOH A . G 4 HOH 12 913 12 HOH HOH A . G 4 HOH 13 914 13 HOH HOH A . G 4 HOH 14 915 14 HOH HOH A . G 4 HOH 15 916 15 HOH HOH A . G 4 HOH 16 917 16 HOH HOH A . G 4 HOH 17 918 17 HOH HOH A . G 4 HOH 18 919 18 HOH HOH A . G 4 HOH 19 920 19 HOH HOH A . G 4 HOH 20 921 20 HOH HOH A . G 4 HOH 21 922 21 HOH HOH A . G 4 HOH 22 923 22 HOH HOH A . G 4 HOH 23 924 23 HOH HOH A . G 4 HOH 24 925 24 HOH HOH A . G 4 HOH 25 926 25 HOH HOH A . G 4 HOH 26 927 26 HOH HOH A . G 4 HOH 27 928 27 HOH HOH A . G 4 HOH 28 929 28 HOH HOH A . G 4 HOH 29 930 29 HOH HOH A . G 4 HOH 30 931 30 HOH HOH A . G 4 HOH 31 932 31 HOH HOH A . G 4 HOH 32 933 32 HOH HOH A . G 4 HOH 33 934 33 HOH HOH A . G 4 HOH 34 935 34 HOH HOH A . G 4 HOH 35 936 35 HOH HOH A . G 4 HOH 36 937 36 HOH HOH A . G 4 HOH 37 938 37 HOH HOH A . G 4 HOH 38 939 38 HOH HOH A . G 4 HOH 39 940 39 HOH HOH A . G 4 HOH 40 941 40 HOH HOH A . G 4 HOH 41 942 41 HOH HOH A . G 4 HOH 42 943 42 HOH HOH A . G 4 HOH 43 944 43 HOH HOH A . G 4 HOH 44 945 44 HOH HOH A . G 4 HOH 45 946 45 HOH HOH A . G 4 HOH 46 947 46 HOH HOH A . G 4 HOH 47 948 47 HOH HOH A . G 4 HOH 48 949 48 HOH HOH A . G 4 HOH 49 950 49 HOH HOH A . G 4 HOH 50 951 50 HOH HOH A . G 4 HOH 51 952 51 HOH HOH A . G 4 HOH 52 953 52 HOH HOH A . G 4 HOH 53 954 53 HOH HOH A . G 4 HOH 54 955 54 HOH HOH A . G 4 HOH 55 956 55 HOH HOH A . G 4 HOH 56 957 56 HOH HOH A . G 4 HOH 57 958 57 HOH HOH A . G 4 HOH 58 959 58 HOH HOH A . G 4 HOH 59 960 59 HOH HOH A . G 4 HOH 60 961 60 HOH HOH A . G 4 HOH 61 962 61 HOH HOH A . G 4 HOH 62 963 62 HOH HOH A . G 4 HOH 63 964 63 HOH HOH A . G 4 HOH 64 965 64 HOH HOH A . G 4 HOH 65 966 65 HOH HOH A . G 4 HOH 66 967 66 HOH HOH A . G 4 HOH 67 968 67 HOH HOH A . G 4 HOH 68 969 68 HOH HOH A . G 4 HOH 69 970 69 HOH HOH A . G 4 HOH 70 971 70 HOH HOH A . G 4 HOH 71 972 71 HOH HOH A . G 4 HOH 72 973 72 HOH HOH A . G 4 HOH 73 974 73 HOH HOH A . G 4 HOH 74 975 74 HOH HOH A . G 4 HOH 75 976 75 HOH HOH A . G 4 HOH 76 977 76 HOH HOH A . G 4 HOH 77 978 77 HOH HOH A . G 4 HOH 78 979 78 HOH HOH A . G 4 HOH 79 980 79 HOH HOH A . G 4 HOH 80 981 80 HOH HOH A . G 4 HOH 81 982 81 HOH HOH A . G 4 HOH 82 983 82 HOH HOH A . G 4 HOH 83 984 83 HOH HOH A . G 4 HOH 84 985 84 HOH HOH A . G 4 HOH 85 986 85 HOH HOH A . G 4 HOH 86 987 86 HOH HOH A . G 4 HOH 87 988 87 HOH HOH A . G 4 HOH 88 989 88 HOH HOH A . G 4 HOH 89 990 89 HOH HOH A . G 4 HOH 90 991 90 HOH HOH A . G 4 HOH 91 992 91 HOH HOH A . G 4 HOH 92 993 92 HOH HOH A . G 4 HOH 93 994 93 HOH HOH A . G 4 HOH 94 995 94 HOH HOH A . G 4 HOH 95 996 95 HOH HOH A . G 4 HOH 96 997 96 HOH HOH A . G 4 HOH 97 998 97 HOH HOH A . G 4 HOH 98 999 98 HOH HOH A . G 4 HOH 99 1000 99 HOH HOH A . G 4 HOH 100 1001 100 HOH HOH A . G 4 HOH 101 1002 101 HOH HOH A . G 4 HOH 102 1003 102 HOH HOH A . G 4 HOH 103 1004 103 HOH HOH A . G 4 HOH 104 1005 104 HOH HOH A . G 4 HOH 105 1006 105 HOH HOH A . G 4 HOH 106 1007 106 HOH HOH A . G 4 HOH 107 1008 107 HOH HOH A . G 4 HOH 108 1009 108 HOH HOH A . G 4 HOH 109 1010 109 HOH HOH A . G 4 HOH 110 1011 110 HOH HOH A . G 4 HOH 111 1012 111 HOH HOH A . G 4 HOH 112 1013 112 HOH HOH A . G 4 HOH 113 1014 113 HOH HOH A . G 4 HOH 114 1015 114 HOH HOH A . G 4 HOH 115 1016 115 HOH HOH A . G 4 HOH 116 1017 116 HOH HOH A . G 4 HOH 117 1018 117 HOH HOH A . G 4 HOH 118 1019 118 HOH HOH A . G 4 HOH 119 1020 119 HOH HOH A . G 4 HOH 120 1021 120 HOH HOH A . G 4 HOH 121 1022 121 HOH HOH A . G 4 HOH 122 1023 122 HOH HOH A . G 4 HOH 123 1024 123 HOH HOH A . G 4 HOH 124 1025 124 HOH HOH A . G 4 HOH 125 1026 125 HOH HOH A . G 4 HOH 126 1027 126 HOH HOH A . G 4 HOH 127 1028 127 HOH HOH A . G 4 HOH 128 1029 128 HOH HOH A . G 4 HOH 129 1030 129 HOH HOH A . G 4 HOH 130 1031 130 HOH HOH A . G 4 HOH 131 1032 131 HOH HOH A . G 4 HOH 132 1033 132 HOH HOH A . G 4 HOH 133 1034 133 HOH HOH A . G 4 HOH 134 1035 134 HOH HOH A . G 4 HOH 135 1036 135 HOH HOH A . G 4 HOH 136 1037 136 HOH HOH A . G 4 HOH 137 1038 137 HOH HOH A . G 4 HOH 138 1039 138 HOH HOH A . G 4 HOH 139 1040 139 HOH HOH A . G 4 HOH 140 1041 140 HOH HOH A . G 4 HOH 141 1042 141 HOH HOH A . G 4 HOH 142 1043 142 HOH HOH A . G 4 HOH 143 1044 143 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SHARP phasing . ? 5 # _cell.entry_id 2E56 _cell.length_a 53.113 _cell.length_b 53.113 _cell.length_c 111.447 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2E56 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2E56 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_percent_sol 48.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.3 _exptl_crystal_grow.pdbx_details '20% PEG8000, 120mM Na-acetate,70mM Na-cacodylate, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2006-10-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL38B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL38B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 2E56 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 48.4 _reflns.number_all ? _reflns.number_obs 11389 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.105 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.3 _reflns.B_iso_Wilson_estimate 26.7 _reflns.pdbx_redundancy 12.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 2E56 _refine.ls_number_reflns_obs 9641 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 48.39 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 88.74 _refine.ls_R_factor_obs 0.19648 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19407 _refine.ls_R_factor_R_free 0.24922 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 477 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.923 _refine.B_iso_mean 39.557 _refine.aniso_B[1][1] 0.81 _refine.aniso_B[2][2] 0.81 _refine.aniso_B[3][3] -1.61 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.241 _refine.pdbx_overall_ESU_R_Free 0.201 _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1162 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 76 _refine_hist.number_atoms_solvent 143 _refine_hist.number_atoms_total 1381 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 48.39 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 1284 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.543 2.019 ? 1722 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.146 5.000 ? 147 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.988 24.340 ? 53 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.402 15.000 ? 223 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.207 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.117 0.200 ? 185 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 923 'X-RAY DIFFRACTION' ? r_nbd_refined 0.279 0.300 ? 556 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.338 0.500 ? 846 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.246 0.500 ? 184 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.315 0.300 ? 54 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.248 0.500 ? 23 'X-RAY DIFFRACTION' ? r_mcbond_it 4.099 2.000 ? 731 'X-RAY DIFFRACTION' ? r_mcangle_it 5.947 3.000 ? 1192 'X-RAY DIFFRACTION' ? r_scbond_it 5.345 2.000 ? 553 'X-RAY DIFFRACTION' ? r_scangle_it 7.736 3.000 ? 530 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.number_reflns_R_work 510 _refine_ls_shell.R_factor_R_work 0.226 _refine_ls_shell.percent_reflns_obs 64.74 _refine_ls_shell.R_factor_R_free 0.383 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 28 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2E56 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2E56 _struct.title 'Crystal structure of human MD-2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2E56 _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' _struct_keywords.text 'INNATE IMMUNITY, LIPID-BINDING, LIPID BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LY96_HUMAN _struct_ref.pdbx_db_accession Q9Y6Y9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGLLHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICR GSDDDYSFCRALKGETVNTTISFSFKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN ; _struct_ref.pdbx_align_begin 17 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2E56 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 144 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9Y6Y9 _struct_ref_seq.db_align_beg 17 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 160 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 17 _struct_ref_seq.pdbx_auth_seq_align_end 160 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id TYR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 86 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 91 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id TYR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 102 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 107 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 35 SG ? ? A CYS 25 A CYS 51 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf2 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 132 SG ? ? A CYS 37 A CYS 148 1_555 ? ? ? ? ? ? ? 2.071 ? ? disulf3 disulf ? ? A CYS 79 SG ? ? ? 1_555 A CYS 89 SG ? ? A CYS 95 A CYS 105 1_555 ? ? ? ? ? ? ? 2.025 ? ? covale1 covale one ? A ASN 10 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 26 A NAG 801 1_555 ? ? ? ? ? ? ? 1.456 ? N-Glycosylation covale2 covale one ? A ASN 98 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 114 A NAG 901 1_555 ? ? ? ? ? ? ? 1.441 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG B . ? ASN A 10 ? NAG A 801 ? 1_555 ASN A 26 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 NAG C . ? ASN A 98 ? NAG A 901 ? 1_555 ASN A 114 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 3 CYS A 9 ? CYS A 35 ? CYS A 25 ? 1_555 CYS A 51 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 21 ? CYS A 132 ? CYS A 37 ? 1_555 CYS A 148 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 79 ? CYS A 89 ? CYS A 95 ? 1_555 CYS A 105 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASN 33 A . ? ASN 49 A PRO 34 A ? PRO 50 A 1 -6.40 2 SER 125 A . ? SER 141 A PRO 126 A ? PRO 142 A 1 2.41 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 6 ? ASN A 10 ? TYR A 22 ASN A 26 A 2 ALA A 14 ? TYR A 20 ? ALA A 30 TYR A 36 A 3 GLU A 128 ? HIS A 139 ? GLU A 144 HIS A 155 A 4 LYS A 114 ? SER A 123 ? LYS A 130 SER A 139 A 5 TYR A 59 ? VAL A 66 ? TYR A 75 VAL A 82 A 6 MET A 69 ? ASN A 70 ? MET A 85 ASN A 86 B 1 TYR A 6 ? ASN A 10 ? TYR A 22 ASN A 26 B 2 ALA A 14 ? TYR A 20 ? ALA A 30 TYR A 36 B 3 GLU A 128 ? HIS A 139 ? GLU A 144 HIS A 155 B 4 LYS A 114 ? SER A 123 ? LYS A 130 SER A 139 B 5 TYR A 59 ? VAL A 66 ? TYR A 75 VAL A 82 B 6 ARG A 74 ? VAL A 77 ? ARG A 90 VAL A 93 C 1 SER A 29 ? ASN A 33 ? SER A 45 ASN A 49 C 2 SER A 41 ? TYR A 49 ? SER A 57 TYR A 65 C 3 VAL A 97 ? PHE A 105 ? VAL A 113 PHE A 121 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 8 ? N VAL A 24 O ILE A 16 ? O ILE A 32 A 2 3 N SER A 17 ? N SER A 33 O VAL A 136 ? O VAL A 152 A 3 4 O ILE A 137 ? O ILE A 153 N TYR A 115 ? N TYR A 131 A 4 5 O LYS A 116 ? O LYS A 132 N THR A 65 ? N THR A 81 A 5 6 N VAL A 66 ? N VAL A 82 O MET A 69 ? O MET A 85 B 1 2 N VAL A 8 ? N VAL A 24 O ILE A 16 ? O ILE A 32 B 2 3 N SER A 17 ? N SER A 33 O VAL A 136 ? O VAL A 152 B 3 4 O ILE A 137 ? O ILE A 153 N TYR A 115 ? N TYR A 131 B 4 5 O LYS A 116 ? O LYS A 132 N THR A 65 ? N THR A 81 B 5 6 N LEU A 62 ? N LEU A 78 O ARG A 74 ? O ARG A 90 C 1 2 N ASN A 31 ? N ASN A 47 O HIS A 46 ? O HIS A 62 C 2 3 N LEU A 45 ? N LEU A 61 O ILE A 101 ? O ILE A 117 # _pdbx_entry_details.entry_id 2E56 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A ASP 99 ? ? NH2 A ARG 106 ? ? 2.10 2 1 O A HOH 945 ? ? O A HOH 999 ? ? 2.16 3 1 ND2 A ASN 114 ? ? C2 A NAG 901 ? ? 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A SER 141 ? ? CA A SER 141 ? ? C A SER 141 ? ? 127.30 111.00 16.30 2.70 N 2 1 N A PRO 142 ? ? CA A PRO 142 ? ? CB A PRO 142 ? ? 109.42 102.60 6.82 1.10 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 38 ? ? 53.25 -142.68 2 1 GLN A 41 ? ? -120.17 -149.28 3 1 LEU A 74 ? ? -30.75 128.81 4 1 THR A 84 ? ? 75.44 -6.82 5 1 ARG A 96 ? ? -105.49 -131.19 6 1 SER A 98 ? ? 61.06 -167.62 7 1 ASP A 99 ? ? -70.42 -148.93 8 1 ASP A 100 ? ? 63.63 -11.99 9 1 SER A 141 ? ? -16.27 103.91 10 1 PRO A 142 ? ? -19.96 117.36 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 10 A ASN 26 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 98 A ASN 114 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 998 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MYR C1 C N N 250 MYR O1 O N N 251 MYR O2 O N N 252 MYR C2 C N N 253 MYR C3 C N N 254 MYR C4 C N N 255 MYR C5 C N N 256 MYR C6 C N N 257 MYR C7 C N N 258 MYR C8 C N N 259 MYR C9 C N N 260 MYR C10 C N N 261 MYR C11 C N N 262 MYR C12 C N N 263 MYR C13 C N N 264 MYR C14 C N N 265 MYR HO2 H N N 266 MYR H21 H N N 267 MYR H22 H N N 268 MYR H31 H N N 269 MYR H32 H N N 270 MYR H41 H N N 271 MYR H42 H N N 272 MYR H51 H N N 273 MYR H52 H N N 274 MYR H61 H N N 275 MYR H62 H N N 276 MYR H71 H N N 277 MYR H72 H N N 278 MYR H81 H N N 279 MYR H82 H N N 280 MYR H91 H N N 281 MYR H92 H N N 282 MYR H101 H N N 283 MYR H102 H N N 284 MYR H111 H N N 285 MYR H112 H N N 286 MYR H121 H N N 287 MYR H122 H N N 288 MYR H131 H N N 289 MYR H132 H N N 290 MYR H141 H N N 291 MYR H142 H N N 292 MYR H143 H N N 293 NAG C1 C N R 294 NAG C2 C N R 295 NAG C3 C N R 296 NAG C4 C N S 297 NAG C5 C N R 298 NAG C6 C N N 299 NAG C7 C N N 300 NAG C8 C N N 301 NAG N2 N N N 302 NAG O1 O N N 303 NAG O3 O N N 304 NAG O4 O N N 305 NAG O5 O N N 306 NAG O6 O N N 307 NAG O7 O N N 308 NAG H1 H N N 309 NAG H2 H N N 310 NAG H3 H N N 311 NAG H4 H N N 312 NAG H5 H N N 313 NAG H61 H N N 314 NAG H62 H N N 315 NAG H81 H N N 316 NAG H82 H N N 317 NAG H83 H N N 318 NAG HN2 H N N 319 NAG HO1 H N N 320 NAG HO3 H N N 321 NAG HO4 H N N 322 NAG HO6 H N N 323 PHE N N N N 324 PHE CA C N S 325 PHE C C N N 326 PHE O O N N 327 PHE CB C N N 328 PHE CG C Y N 329 PHE CD1 C Y N 330 PHE CD2 C Y N 331 PHE CE1 C Y N 332 PHE CE2 C Y N 333 PHE CZ C Y N 334 PHE OXT O N N 335 PHE H H N N 336 PHE H2 H N N 337 PHE HA H N N 338 PHE HB2 H N N 339 PHE HB3 H N N 340 PHE HD1 H N N 341 PHE HD2 H N N 342 PHE HE1 H N N 343 PHE HE2 H N N 344 PHE HZ H N N 345 PHE HXT H N N 346 PRO N N N N 347 PRO CA C N S 348 PRO C C N N 349 PRO O O N N 350 PRO CB C N N 351 PRO CG C N N 352 PRO CD C N N 353 PRO OXT O N N 354 PRO H H N N 355 PRO HA H N N 356 PRO HB2 H N N 357 PRO HB3 H N N 358 PRO HG2 H N N 359 PRO HG3 H N N 360 PRO HD2 H N N 361 PRO HD3 H N N 362 PRO HXT H N N 363 SER N N N N 364 SER CA C N S 365 SER C C N N 366 SER O O N N 367 SER CB C N N 368 SER OG O N N 369 SER OXT O N N 370 SER H H N N 371 SER H2 H N N 372 SER HA H N N 373 SER HB2 H N N 374 SER HB3 H N N 375 SER HG H N N 376 SER HXT H N N 377 THR N N N N 378 THR CA C N S 379 THR C C N N 380 THR O O N N 381 THR CB C N R 382 THR OG1 O N N 383 THR CG2 C N N 384 THR OXT O N N 385 THR H H N N 386 THR H2 H N N 387 THR HA H N N 388 THR HB H N N 389 THR HG1 H N N 390 THR HG21 H N N 391 THR HG22 H N N 392 THR HG23 H N N 393 THR HXT H N N 394 TRP N N N N 395 TRP CA C N S 396 TRP C C N N 397 TRP O O N N 398 TRP CB C N N 399 TRP CG C Y N 400 TRP CD1 C Y N 401 TRP CD2 C Y N 402 TRP NE1 N Y N 403 TRP CE2 C Y N 404 TRP CE3 C Y N 405 TRP CZ2 C Y N 406 TRP CZ3 C Y N 407 TRP CH2 C Y N 408 TRP OXT O N N 409 TRP H H N N 410 TRP H2 H N N 411 TRP HA H N N 412 TRP HB2 H N N 413 TRP HB3 H N N 414 TRP HD1 H N N 415 TRP HE1 H N N 416 TRP HE3 H N N 417 TRP HZ2 H N N 418 TRP HZ3 H N N 419 TRP HH2 H N N 420 TRP HXT H N N 421 TYR N N N N 422 TYR CA C N S 423 TYR C C N N 424 TYR O O N N 425 TYR CB C N N 426 TYR CG C Y N 427 TYR CD1 C Y N 428 TYR CD2 C Y N 429 TYR CE1 C Y N 430 TYR CE2 C Y N 431 TYR CZ C Y N 432 TYR OH O N N 433 TYR OXT O N N 434 TYR H H N N 435 TYR H2 H N N 436 TYR HA H N N 437 TYR HB2 H N N 438 TYR HB3 H N N 439 TYR HD1 H N N 440 TYR HD2 H N N 441 TYR HE1 H N N 442 TYR HE2 H N N 443 TYR HH H N N 444 TYR HXT H N N 445 VAL N N N N 446 VAL CA C N S 447 VAL C C N N 448 VAL O O N N 449 VAL CB C N N 450 VAL CG1 C N N 451 VAL CG2 C N N 452 VAL OXT O N N 453 VAL H H N N 454 VAL H2 H N N 455 VAL HA H N N 456 VAL HB H N N 457 VAL HG11 H N N 458 VAL HG12 H N N 459 VAL HG13 H N N 460 VAL HG21 H N N 461 VAL HG22 H N N 462 VAL HG23 H N N 463 VAL HXT H N N 464 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 MYR C1 O1 doub N N 237 MYR C1 O2 sing N N 238 MYR C1 C2 sing N N 239 MYR O2 HO2 sing N N 240 MYR C2 C3 sing N N 241 MYR C2 H21 sing N N 242 MYR C2 H22 sing N N 243 MYR C3 C4 sing N N 244 MYR C3 H31 sing N N 245 MYR C3 H32 sing N N 246 MYR C4 C5 sing N N 247 MYR C4 H41 sing N N 248 MYR C4 H42 sing N N 249 MYR C5 C6 sing N N 250 MYR C5 H51 sing N N 251 MYR C5 H52 sing N N 252 MYR C6 C7 sing N N 253 MYR C6 H61 sing N N 254 MYR C6 H62 sing N N 255 MYR C7 C8 sing N N 256 MYR C7 H71 sing N N 257 MYR C7 H72 sing N N 258 MYR C8 C9 sing N N 259 MYR C8 H81 sing N N 260 MYR C8 H82 sing N N 261 MYR C9 C10 sing N N 262 MYR C9 H91 sing N N 263 MYR C9 H92 sing N N 264 MYR C10 C11 sing N N 265 MYR C10 H101 sing N N 266 MYR C10 H102 sing N N 267 MYR C11 C12 sing N N 268 MYR C11 H111 sing N N 269 MYR C11 H112 sing N N 270 MYR C12 C13 sing N N 271 MYR C12 H121 sing N N 272 MYR C12 H122 sing N N 273 MYR C13 C14 sing N N 274 MYR C13 H131 sing N N 275 MYR C13 H132 sing N N 276 MYR C14 H141 sing N N 277 MYR C14 H142 sing N N 278 MYR C14 H143 sing N N 279 NAG C1 C2 sing N N 280 NAG C1 O1 sing N N 281 NAG C1 O5 sing N N 282 NAG C1 H1 sing N N 283 NAG C2 C3 sing N N 284 NAG C2 N2 sing N N 285 NAG C2 H2 sing N N 286 NAG C3 C4 sing N N 287 NAG C3 O3 sing N N 288 NAG C3 H3 sing N N 289 NAG C4 C5 sing N N 290 NAG C4 O4 sing N N 291 NAG C4 H4 sing N N 292 NAG C5 C6 sing N N 293 NAG C5 O5 sing N N 294 NAG C5 H5 sing N N 295 NAG C6 O6 sing N N 296 NAG C6 H61 sing N N 297 NAG C6 H62 sing N N 298 NAG C7 C8 sing N N 299 NAG C7 N2 sing N N 300 NAG C7 O7 doub N N 301 NAG C8 H81 sing N N 302 NAG C8 H82 sing N N 303 NAG C8 H83 sing N N 304 NAG N2 HN2 sing N N 305 NAG O1 HO1 sing N N 306 NAG O3 HO3 sing N N 307 NAG O4 HO4 sing N N 308 NAG O6 HO6 sing N N 309 PHE N CA sing N N 310 PHE N H sing N N 311 PHE N H2 sing N N 312 PHE CA C sing N N 313 PHE CA CB sing N N 314 PHE CA HA sing N N 315 PHE C O doub N N 316 PHE C OXT sing N N 317 PHE CB CG sing N N 318 PHE CB HB2 sing N N 319 PHE CB HB3 sing N N 320 PHE CG CD1 doub Y N 321 PHE CG CD2 sing Y N 322 PHE CD1 CE1 sing Y N 323 PHE CD1 HD1 sing N N 324 PHE CD2 CE2 doub Y N 325 PHE CD2 HD2 sing N N 326 PHE CE1 CZ doub Y N 327 PHE CE1 HE1 sing N N 328 PHE CE2 CZ sing Y N 329 PHE CE2 HE2 sing N N 330 PHE CZ HZ sing N N 331 PHE OXT HXT sing N N 332 PRO N CA sing N N 333 PRO N CD sing N N 334 PRO N H sing N N 335 PRO CA C sing N N 336 PRO CA CB sing N N 337 PRO CA HA sing N N 338 PRO C O doub N N 339 PRO C OXT sing N N 340 PRO CB CG sing N N 341 PRO CB HB2 sing N N 342 PRO CB HB3 sing N N 343 PRO CG CD sing N N 344 PRO CG HG2 sing N N 345 PRO CG HG3 sing N N 346 PRO CD HD2 sing N N 347 PRO CD HD3 sing N N 348 PRO OXT HXT sing N N 349 SER N CA sing N N 350 SER N H sing N N 351 SER N H2 sing N N 352 SER CA C sing N N 353 SER CA CB sing N N 354 SER CA HA sing N N 355 SER C O doub N N 356 SER C OXT sing N N 357 SER CB OG sing N N 358 SER CB HB2 sing N N 359 SER CB HB3 sing N N 360 SER OG HG sing N N 361 SER OXT HXT sing N N 362 THR N CA sing N N 363 THR N H sing N N 364 THR N H2 sing N N 365 THR CA C sing N N 366 THR CA CB sing N N 367 THR CA HA sing N N 368 THR C O doub N N 369 THR C OXT sing N N 370 THR CB OG1 sing N N 371 THR CB CG2 sing N N 372 THR CB HB sing N N 373 THR OG1 HG1 sing N N 374 THR CG2 HG21 sing N N 375 THR CG2 HG22 sing N N 376 THR CG2 HG23 sing N N 377 THR OXT HXT sing N N 378 TRP N CA sing N N 379 TRP N H sing N N 380 TRP N H2 sing N N 381 TRP CA C sing N N 382 TRP CA CB sing N N 383 TRP CA HA sing N N 384 TRP C O doub N N 385 TRP C OXT sing N N 386 TRP CB CG sing N N 387 TRP CB HB2 sing N N 388 TRP CB HB3 sing N N 389 TRP CG CD1 doub Y N 390 TRP CG CD2 sing Y N 391 TRP CD1 NE1 sing Y N 392 TRP CD1 HD1 sing N N 393 TRP CD2 CE2 doub Y N 394 TRP CD2 CE3 sing Y N 395 TRP NE1 CE2 sing Y N 396 TRP NE1 HE1 sing N N 397 TRP CE2 CZ2 sing Y N 398 TRP CE3 CZ3 doub Y N 399 TRP CE3 HE3 sing N N 400 TRP CZ2 CH2 doub Y N 401 TRP CZ2 HZ2 sing N N 402 TRP CZ3 CH2 sing Y N 403 TRP CZ3 HZ3 sing N N 404 TRP CH2 HH2 sing N N 405 TRP OXT HXT sing N N 406 TYR N CA sing N N 407 TYR N H sing N N 408 TYR N H2 sing N N 409 TYR CA C sing N N 410 TYR CA CB sing N N 411 TYR CA HA sing N N 412 TYR C O doub N N 413 TYR C OXT sing N N 414 TYR CB CG sing N N 415 TYR CB HB2 sing N N 416 TYR CB HB3 sing N N 417 TYR CG CD1 doub Y N 418 TYR CG CD2 sing Y N 419 TYR CD1 CE1 sing Y N 420 TYR CD1 HD1 sing N N 421 TYR CD2 CE2 doub Y N 422 TYR CD2 HD2 sing N N 423 TYR CE1 CZ doub Y N 424 TYR CE1 HE1 sing N N 425 TYR CE2 CZ sing Y N 426 TYR CE2 HE2 sing N N 427 TYR CZ OH sing N N 428 TYR OH HH sing N N 429 TYR OXT HXT sing N N 430 VAL N CA sing N N 431 VAL N H sing N N 432 VAL N H2 sing N N 433 VAL CA C sing N N 434 VAL CA CB sing N N 435 VAL CA HA sing N N 436 VAL C O doub N N 437 VAL C OXT sing N N 438 VAL CB CG1 sing N N 439 VAL CB CG2 sing N N 440 VAL CB HB sing N N 441 VAL CG1 HG11 sing N N 442 VAL CG1 HG12 sing N N 443 VAL CG1 HG13 sing N N 444 VAL CG2 HG21 sing N N 445 VAL CG2 HG22 sing N N 446 VAL CG2 HG23 sing N N 447 VAL OXT HXT sing N N 448 # _atom_sites.entry_id 2E56 _atom_sites.fract_transf_matrix[1][1] 0.018828 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018828 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008973 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_