HEADER LYASE 05-JAN-07 2E6Y TITLE COVALENT COMPLEX OF OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE (ODCASE) TITLE 2 WITH 6-IODO-UMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: OROTIDINE 5'-PHOSPHATE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OMP DECARBOXYLASE, OMPDCASE, OMPDECASE, OROTIDINE 5'- COMPND 5 MONOPHOSPHATE DECARBOXYLASE, ODCASE; COMPND 6 EC: 4.1.1.23; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS; SOURCE 3 ORGANISM_TAXID: 145262; SOURCE 4 GENE: PYRF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TIM-BARREL, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FUJIHASHI,A.M.BELLO,L.P.KOTRA,E.F.PAI REVDAT 6 23-OCT-24 2E6Y 1 REMARK REVDAT 5 25-OCT-23 2E6Y 1 REMARK REVDAT 4 10-NOV-21 2E6Y 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2E6Y 1 VERSN REVDAT 2 24-FEB-09 2E6Y 1 VERSN REVDAT 1 27-FEB-07 2E6Y 0 JRNL AUTH A.M.BELLO,E.PODUCH,M.FUJIHASHI,M.AMANI,Y.LI,I.CRANDALL, JRNL AUTH 2 R.HUI,P.I.LEE,K.C.KAIN,E.F.PAI,L.P.KOTRA JRNL TITL A POTENT, COVALENT INHIBITOR OF OROTIDINE 5'-MONOPHOSPHATE JRNL TITL 2 DECARBOXYLASE WITH ANTIMALARIAL ACTIVITY. JRNL REF J.MED.CHEM. V. 50 915 2007 JRNL REFN ISSN 0022-2623 JRNL PMID 17290979 JRNL DOI 10.1021/JM060827P REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1231984.960 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 57709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THE SAME SET WITH 1X1Z REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2839 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5467 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 262 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3260 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 289 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.48000 REMARK 3 B22 (A**2) : 0.81000 REMARK 3 B33 (A**2) : -2.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.14 REMARK 3 ESD FROM SIGMAA (A) : 0.06 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.280 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.980 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.610 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.320 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.480 ; 3.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.41 REMARK 3 BSOL : 53.32 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ALL.01.PAR REMARK 3 PARAMETER FILE 4 : UMP_K72.COV.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ALL.01.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E6Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026302. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57752 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1KM1(LOCATION), 1DV7(MODEL) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.03150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE DIMER IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT IS REMARK 300 CONSIDERED TO BE THE BIOLOGICAL ASSEMBLY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 SER A 3 REMARK 465 ARG A 4 REMARK 465 ARG A 5 REMARK 465 VAL A 6 REMARK 465 ASP A 7 REMARK 465 VAL A 8 REMARK 465 MET A 9 REMARK 465 ASP A 10 REMARK 465 ARG A 226 REMARK 465 ILE A 227 REMARK 465 PRO A 228 REMARK 465 GLU A 229 REMARK 465 ASP A 230 REMARK 465 PRO A 231 REMARK 465 ALA A 232 REMARK 465 ALA A 233 REMARK 465 ASN A 234 REMARK 465 LYS A 235 REMARK 465 ALA A 236 REMARK 465 ARG A 237 REMARK 465 LYS A 238 REMARK 465 GLU A 239 REMARK 465 ALA A 240 REMARK 465 GLU A 241 REMARK 465 LEU A 242 REMARK 465 ALA A 243 REMARK 465 ALA A 244 REMARK 465 ALA A 245 REMARK 465 THR A 246 REMARK 465 ALA A 247 REMARK 465 GLU A 248 REMARK 465 GLN A 249 REMARK 465 GLY B 998 REMARK 465 SER B 999 REMARK 465 HIS B 1000 REMARK 465 MET B 1001 REMARK 465 ARG B 1002 REMARK 465 SER B 1003 REMARK 465 ARG B 1004 REMARK 465 ARG B 1005 REMARK 465 VAL B 1006 REMARK 465 ASP B 1007 REMARK 465 VAL B 1008 REMARK 465 MET B 1009 REMARK 465 ASP B 1010 REMARK 465 ARG B 1226 REMARK 465 ILE B 1227 REMARK 465 PRO B 1228 REMARK 465 GLU B 1229 REMARK 465 ASP B 1230 REMARK 465 PRO B 1231 REMARK 465 ALA B 1232 REMARK 465 ALA B 1233 REMARK 465 ASN B 1234 REMARK 465 LYS B 1235 REMARK 465 ALA B 1236 REMARK 465 ARG B 1237 REMARK 465 LYS B 1238 REMARK 465 GLU B 1239 REMARK 465 ALA B 1240 REMARK 465 GLU B 1241 REMARK 465 LEU B 1242 REMARK 465 ALA B 1243 REMARK 465 ALA B 1244 REMARK 465 ALA B 1245 REMARK 465 THR B 1246 REMARK 465 ALA B 1247 REMARK 465 GLU B 1248 REMARK 465 GLN B 1249 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 11.88 -140.51 REMARK 500 LYS A 72 54.25 37.68 REMARK 500 ALA A 74 49.93 -148.41 REMARK 500 THR A 124 -85.48 -97.23 REMARK 500 PHE A 134 -37.65 -131.38 REMARK 500 LYS B1072 55.73 36.64 REMARK 500 ALA B1074 47.22 -146.44 REMARK 500 THR B1124 -85.67 -97.23 REMARK 500 PHE B1134 -37.56 -130.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 314 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DV7 RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM THE SAME SOURCE REMARK 900 RELATED ID: 1DVJ RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM THE SAME SOURCE REMARK 900 RELATED ID: 1KLY RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM THE SAME SOURCE REMARK 900 RELATED ID: 1KLZ RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM THE SAME SOURCE REMARK 900 RELATED ID: 1KM0 RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM THE SAME SOURCE REMARK 900 RELATED ID: 1KM1 RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM THE SAME SOURCE REMARK 900 RELATED ID: 1KM2 RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM THE SAME SOURCE REMARK 900 RELATED ID: 1KM3 RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM THE SAME SOURCE REMARK 900 RELATED ID: 1KM4 RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM THE SAME SOURCE REMARK 900 RELATED ID: 1KM5 RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM THE SAME SOURCE REMARK 900 RELATED ID: 1KM6 RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM THE SAME SOURCE REMARK 900 RELATED ID: 1LOL RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM THE SAME SOURCE REMARK 900 RELATED ID: 1LOQ RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM THE SAME SOURCE REMARK 900 RELATED ID: 1LOR RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM THE SAME SOURCE REMARK 900 RELATED ID: 1LOS RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM THE SAME SOURCE REMARK 900 RELATED ID: 1LP6 RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM THE SAME SOURCE REMARK 900 RELATED ID: 1X1Z RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM THE SAME SOURCE DBREF 2E6Y A 1 228 UNP O26232 PYRF_METTH 1 228 DBREF 2E6Y B 1001 1228 UNP O26232 PYRF_METTH 1 228 SEQADV 2E6Y GLY A -2 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y SER A -1 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y HIS A 0 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y PRO A 101 UNP O26232 ARG 101 SEE REMARK 999 SEQADV 2E6Y ARG A 226 UNP O26232 LEU 226 ENGINEERED MUTATION SEQADV 2E6Y ILE A 227 UNP O26232 ASN 227 ENGINEERED MUTATION SEQADV 2E6Y GLU A 229 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ASP A 230 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y PRO A 231 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ALA A 232 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ALA A 233 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ASN A 234 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y LYS A 235 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ALA A 236 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ARG A 237 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y LYS A 238 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y GLU A 239 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ALA A 240 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y GLU A 241 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y LEU A 242 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ALA A 243 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ALA A 244 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ALA A 245 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y THR A 246 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ALA A 247 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y GLU A 248 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y GLN A 249 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y GLY B 998 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y SER B 999 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y HIS B 1000 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y PRO B 1101 UNP O26232 ARG 101 SEE REMARK 999 SEQADV 2E6Y ARG B 1226 UNP O26232 LEU 226 ENGINEERED MUTATION SEQADV 2E6Y ILE B 1227 UNP O26232 ASN 227 ENGINEERED MUTATION SEQADV 2E6Y GLU B 1229 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ASP B 1230 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y PRO B 1231 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ALA B 1232 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ALA B 1233 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ASN B 1234 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y LYS B 1235 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ALA B 1236 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ARG B 1237 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y LYS B 1238 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y GLU B 1239 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ALA B 1240 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y GLU B 1241 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y LEU B 1242 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ALA B 1243 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ALA B 1244 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ALA B 1245 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y THR B 1246 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y ALA B 1247 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y GLU B 1248 UNP O26232 CLONING ARTIFACT SEQADV 2E6Y GLN B 1249 UNP O26232 CLONING ARTIFACT SEQRES 1 A 252 GLY SER HIS MET ARG SER ARG ARG VAL ASP VAL MET ASP SEQRES 2 A 252 VAL MET ASN ARG LEU ILE LEU ALA MET ASP LEU MET ASN SEQRES 3 A 252 ARG ASP ASP ALA LEU ARG VAL THR GLY GLU VAL ARG GLU SEQRES 4 A 252 TYR ILE ASP THR VAL LYS ILE GLY TYR PRO LEU VAL LEU SEQRES 5 A 252 SER GLU GLY MET ASP ILE ILE ALA GLU PHE ARG LYS ARG SEQRES 6 A 252 PHE GLY CYS ARG ILE ILE ALA ASP PHE LYS VAL ALA ASP SEQRES 7 A 252 ILE PRO GLU THR ASN GLU LYS ILE CYS ARG ALA THR PHE SEQRES 8 A 252 LYS ALA GLY ALA ASP ALA ILE ILE VAL HIS GLY PHE PRO SEQRES 9 A 252 GLY ALA ASP SER VAL ARG ALA CYS LEU ASN VAL ALA GLU SEQRES 10 A 252 GLU MET GLY ARG GLU VAL PHE LEU LEU THR GLU MET SER SEQRES 11 A 252 HIS PRO GLY ALA GLU MET PHE ILE GLN GLY ALA ALA ASP SEQRES 12 A 252 GLU ILE ALA ARG MET GLY VAL ASP LEU GLY VAL LYS ASN SEQRES 13 A 252 TYR VAL GLY PRO SER THR ARG PRO GLU ARG LEU SER ARG SEQRES 14 A 252 LEU ARG GLU ILE ILE GLY GLN ASP SER PHE LEU ILE SER SEQRES 15 A 252 PRO GLY VAL GLY ALA GLN GLY GLY ASP PRO GLY GLU THR SEQRES 16 A 252 LEU ARG PHE ALA ASP ALA ILE ILE VAL GLY ARG SER ILE SEQRES 17 A 252 TYR LEU ALA ASP ASN PRO ALA ALA ALA ALA ALA GLY ILE SEQRES 18 A 252 ILE GLU SER ILE LYS ASP LEU ARG ILE PRO GLU ASP PRO SEQRES 19 A 252 ALA ALA ASN LYS ALA ARG LYS GLU ALA GLU LEU ALA ALA SEQRES 20 A 252 ALA THR ALA GLU GLN SEQRES 1 B 252 GLY SER HIS MET ARG SER ARG ARG VAL ASP VAL MET ASP SEQRES 2 B 252 VAL MET ASN ARG LEU ILE LEU ALA MET ASP LEU MET ASN SEQRES 3 B 252 ARG ASP ASP ALA LEU ARG VAL THR GLY GLU VAL ARG GLU SEQRES 4 B 252 TYR ILE ASP THR VAL LYS ILE GLY TYR PRO LEU VAL LEU SEQRES 5 B 252 SER GLU GLY MET ASP ILE ILE ALA GLU PHE ARG LYS ARG SEQRES 6 B 252 PHE GLY CYS ARG ILE ILE ALA ASP PHE LYS VAL ALA ASP SEQRES 7 B 252 ILE PRO GLU THR ASN GLU LYS ILE CYS ARG ALA THR PHE SEQRES 8 B 252 LYS ALA GLY ALA ASP ALA ILE ILE VAL HIS GLY PHE PRO SEQRES 9 B 252 GLY ALA ASP SER VAL ARG ALA CYS LEU ASN VAL ALA GLU SEQRES 10 B 252 GLU MET GLY ARG GLU VAL PHE LEU LEU THR GLU MET SER SEQRES 11 B 252 HIS PRO GLY ALA GLU MET PHE ILE GLN GLY ALA ALA ASP SEQRES 12 B 252 GLU ILE ALA ARG MET GLY VAL ASP LEU GLY VAL LYS ASN SEQRES 13 B 252 TYR VAL GLY PRO SER THR ARG PRO GLU ARG LEU SER ARG SEQRES 14 B 252 LEU ARG GLU ILE ILE GLY GLN ASP SER PHE LEU ILE SER SEQRES 15 B 252 PRO GLY VAL GLY ALA GLN GLY GLY ASP PRO GLY GLU THR SEQRES 16 B 252 LEU ARG PHE ALA ASP ALA ILE ILE VAL GLY ARG SER ILE SEQRES 17 B 252 TYR LEU ALA ASP ASN PRO ALA ALA ALA ALA ALA GLY ILE SEQRES 18 B 252 ILE GLU SER ILE LYS ASP LEU ARG ILE PRO GLU ASP PRO SEQRES 19 B 252 ALA ALA ASN LYS ALA ARG LYS GLU ALA GLU LEU ALA ALA SEQRES 20 B 252 ALA THR ALA GLU GLN HET U5P A 301 21 HET GOL A 311 6 HET GOL A 312 6 HET GOL A 314 6 HET U5P B 302 21 HET GOL B 313 6 HETNAM U5P URIDINE-5'-MONOPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 U5P 2(C9 H13 N2 O9 P) FORMUL 4 GOL 4(C3 H8 O3) FORMUL 9 HOH *289(H2 O) HELIX 1 1 VAL A 11 ASN A 13 5 3 HELIX 2 2 ASN A 23 ARG A 35 1 13 HELIX 3 3 GLU A 36 ILE A 38 5 3 HELIX 4 4 TYR A 45 GLY A 52 1 8 HELIX 5 5 MET A 53 GLY A 64 1 12 HELIX 6 6 ILE A 76 ALA A 90 1 15 HELIX 7 7 GLY A 102 GLY A 117 1 16 HELIX 8 8 HIS A 128 MET A 133 5 6 HELIX 9 9 PHE A 134 GLY A 150 1 17 HELIX 10 10 ARG A 160 GLY A 172 1 13 HELIX 11 11 ASP A 188 LEU A 193 1 6 HELIX 12 12 GLY A 202 LEU A 207 1 6 HELIX 13 13 ASN A 210 ASP A 224 1 15 HELIX 14 14 VAL B 1011 ASN B 1013 5 3 HELIX 15 15 ASN B 1023 ARG B 1035 1 13 HELIX 16 16 GLU B 1036 ILE B 1038 5 3 HELIX 17 17 TYR B 1045 GLY B 1052 1 8 HELIX 18 18 MET B 1053 GLY B 1064 1 12 HELIX 19 19 ILE B 1076 ALA B 1090 1 15 HELIX 20 20 GLY B 1102 GLY B 1117 1 16 HELIX 21 21 HIS B 1128 MET B 1133 5 6 HELIX 22 22 PHE B 1134 GLY B 1150 1 17 HELIX 23 23 ARG B 1160 GLY B 1172 1 13 HELIX 24 24 ASP B 1188 LEU B 1193 1 6 HELIX 25 25 GLY B 1202 LEU B 1207 1 6 HELIX 26 26 ASN B 1210 LEU B 1225 1 16 SHEET 1 A 9 LEU A 15 MET A 19 0 SHEET 2 A 9 THR A 40 GLY A 44 1 O LYS A 42 N LEU A 17 SHEET 3 A 9 ARG A 66 VAL A 73 1 O ASP A 70 N ILE A 43 SHEET 4 A 9 ALA A 94 HIS A 98 1 O ALA A 94 N ALA A 69 SHEET 5 A 9 GLU A 119 LEU A 123 1 O LEU A 123 N VAL A 97 SHEET 6 A 9 ASN A 153 VAL A 155 1 O ASN A 153 N LEU A 122 SHEET 7 A 9 PHE A 176 SER A 179 1 O PHE A 176 N TYR A 154 SHEET 8 A 9 ALA A 198 VAL A 201 1 O ILE A 200 N SER A 179 SHEET 9 A 9 LEU A 15 MET A 19 1 N ILE A 16 O ILE A 199 SHEET 1 B 9 LEU B1015 MET B1019 0 SHEET 2 B 9 THR B1040 GLY B1044 1 O LYS B1042 N LEU B1017 SHEET 3 B 9 ARG B1066 VAL B1073 1 O ILE B1068 N ILE B1043 SHEET 4 B 9 ALA B1094 HIS B1098 1 O ALA B1094 N ALA B1069 SHEET 5 B 9 GLU B1119 LEU B1123 1 O LEU B1123 N VAL B1097 SHEET 6 B 9 ASN B1153 VAL B1155 1 O ASN B1153 N LEU B1122 SHEET 7 B 9 PHE B1176 SER B1179 1 O PHE B1176 N TYR B1154 SHEET 8 B 9 ALA B1198 VAL B1201 1 O ILE B1200 N SER B1179 SHEET 9 B 9 LEU B1015 MET B1019 1 N ILE B1016 O ILE B1199 LINK NZ LYS A 72 C6 U5P A 301 1555 1555 1.41 LINK C6 U5P B 302 NZ LYS B1072 1555 1555 1.42 SITE 1 AC1 18 ASP A 20 LYS A 42 LYS A 72 MET A 126 SITE 2 AC1 18 SER A 127 PRO A 180 GLN A 185 GLY A 202 SITE 3 AC1 18 ARG A 203 HOH A 402 HOH A 403 HOH A 406 SITE 4 AC1 18 HOH A 407 HOH A 408 HOH A 411 ASP B1075 SITE 5 AC1 18 ILE B1076 THR B1079 SITE 1 AC2 19 ASP A 75 ILE A 76 THR A 79 HOH A 607 SITE 2 AC2 19 HOH B 422 HOH B 423 HOH B 426 HOH B 427 SITE 3 AC2 19 HOH B 428 HOH B 431 ASP B1020 LYS B1042 SITE 4 AC2 19 LYS B1072 MET B1126 SER B1127 PRO B1180 SITE 5 AC2 19 GLN B1185 GLY B1202 ARG B1203 SITE 1 AC3 6 ASN A 210 HOH A 536 HOH A 539 THR B1159 SITE 2 AC3 6 PRO B1161 GLY B1186 SITE 1 AC4 7 THR A 159 PRO A 161 GLY A 186 HOH B 535 SITE 2 AC4 7 HOH B 540 HOH B 769 ASN B1210 SITE 1 AC5 6 GLU A 162 ALA B1208 ASP B1209 ASN B1210 SITE 2 AC5 6 ALA B1213 ALA B1214 SITE 1 AC6 5 ALA A 208 ASP A 209 ASN A 210 ALA A 213 SITE 2 AC6 5 ALA A 214 CRYST1 58.163 74.063 59.243 90.00 119.39 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017193 0.000000 0.009684 0.00000 SCALE2 0.000000 0.013502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019373 0.00000