HEADER TRANSFERASE, SIGNALING PROTEIN 10-JAN-07 2E7H TITLE SOLUTION STRUCTURE OF THE SECOND FN3 DOMAIN FROM HUMAN EPHRIN TYPE-B TITLE 2 RECEPTOR 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-B RECEPTOR 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FN3 DOMAIN; COMPND 5 SYNONYM: TYROSINE-PROTEIN KINASE RECEPTOR HTK; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHB4, HTK; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050919-21; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS FN3 DOMAIN, EPHRIN TYPE-B RECEPTOR 4 PRECURSOR, TYROSINE-PROTEIN KEYWDS 2 KINASE RECEPTOR HTK, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 3 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2E7H 1 REMARK REVDAT 3 09-MAR-22 2E7H 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E7H 1 VERSN REVDAT 1 10-JUL-07 2E7H 0 JRNL AUTH X.R.QIN,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND FN3 DOMAIN FROM HUMAN JRNL TITL 2 EPHRIN TYPE-B RECEPTOR 4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E7H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026321. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.80MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9816, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 23 147.71 -174.70 REMARK 500 1 VAL A 30 97.34 -34.39 REMARK 500 1 GLU A 47 155.56 -38.86 REMARK 500 1 LYS A 48 51.20 -90.03 REMARK 500 1 GLU A 95 143.79 -34.56 REMARK 500 1 THR A 100 32.15 37.99 REMARK 500 1 GLN A 101 170.97 -47.03 REMARK 500 2 SER A 19 84.50 -68.27 REMARK 500 2 ALA A 27 125.92 -173.93 REMARK 500 2 VAL A 30 98.95 -36.69 REMARK 500 2 LEU A 39 -63.60 -97.08 REMARK 500 2 SER A 54 -37.34 -36.83 REMARK 500 2 SER A 55 60.90 -104.89 REMARK 500 2 ARG A 73 46.60 -77.82 REMARK 500 2 GLN A 94 107.83 -49.97 REMARK 500 2 GLU A 95 147.58 -35.23 REMARK 500 2 PRO A 106 -179.07 -69.77 REMARK 500 2 SER A 108 43.42 34.36 REMARK 500 3 VAL A 30 98.44 -35.94 REMARK 500 3 VAL A 38 157.14 -42.81 REMARK 500 3 ALA A 50 109.05 -47.52 REMARK 500 3 ARG A 73 88.68 -60.40 REMARK 500 3 PRO A 106 -179.87 -69.75 REMARK 500 4 SER A 19 101.67 -56.27 REMARK 500 4 VAL A 30 98.07 -35.42 REMARK 500 4 LEU A 39 -63.07 -105.43 REMARK 500 4 SER A 62 42.63 -90.35 REMARK 500 4 GLU A 95 140.15 -36.34 REMARK 500 4 GLN A 99 50.61 -94.59 REMARK 500 5 VAL A 11 123.70 -37.78 REMARK 500 5 VAL A 30 98.11 -35.44 REMARK 500 5 PRO A 31 -178.42 -69.82 REMARK 500 5 ASP A 40 151.31 -36.97 REMARK 500 5 LYS A 48 -70.10 -38.41 REMARK 500 5 ALA A 50 146.22 -174.02 REMARK 500 5 ASN A 64 31.05 -84.05 REMARK 500 5 SER A 76 137.61 -35.83 REMARK 500 5 GLN A 99 44.11 -96.64 REMARK 500 5 LEU A 102 28.40 48.22 REMARK 500 6 VAL A 30 99.52 -37.53 REMARK 500 6 ASP A 40 159.00 -40.21 REMARK 500 6 ALA A 50 157.28 -45.34 REMARK 500 6 SER A 62 41.15 -88.12 REMARK 500 6 ASN A 64 30.67 -84.01 REMARK 500 6 ARG A 73 156.58 -45.30 REMARK 500 7 SER A 2 149.17 -34.89 REMARK 500 7 VAL A 11 137.41 -36.48 REMARK 500 7 VAL A 30 100.20 -37.25 REMARK 500 7 ASP A 40 160.36 -43.71 REMARK 500 7 GLU A 47 157.03 -49.87 REMARK 500 REMARK 500 THIS ENTRY HAS 163 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002002342.2 RELATED DB: TARGETDB DBREF 2E7H A 8 103 UNP P54760 EPHB4_HUMAN 434 529 SEQADV 2E7H GLY A 1 UNP P54760 CLONING ARTIFACT SEQADV 2E7H SER A 2 UNP P54760 CLONING ARTIFACT SEQADV 2E7H SER A 3 UNP P54760 CLONING ARTIFACT SEQADV 2E7H GLY A 4 UNP P54760 CLONING ARTIFACT SEQADV 2E7H SER A 5 UNP P54760 CLONING ARTIFACT SEQADV 2E7H SER A 6 UNP P54760 CLONING ARTIFACT SEQADV 2E7H GLY A 7 UNP P54760 CLONING ARTIFACT SEQADV 2E7H SER A 104 UNP P54760 CLONING ARTIFACT SEQADV 2E7H GLY A 105 UNP P54760 CLONING ARTIFACT SEQADV 2E7H PRO A 106 UNP P54760 CLONING ARTIFACT SEQADV 2E7H SER A 107 UNP P54760 CLONING ARTIFACT SEQADV 2E7H SER A 108 UNP P54760 CLONING ARTIFACT SEQADV 2E7H GLY A 109 UNP P54760 CLONING ARTIFACT SEQRES 1 A 109 GLY SER SER GLY SER SER GLY PRO PRO ALA VAL SER ASP SEQRES 2 A 109 ILE ARG VAL THR ARG SER SER PRO SER SER LEU SER LEU SEQRES 3 A 109 ALA TRP ALA VAL PRO ARG ALA PRO SER GLY ALA VAL LEU SEQRES 4 A 109 ASP TYR GLU VAL LYS TYR HIS GLU LYS GLY ALA GLU GLY SEQRES 5 A 109 PRO SER SER VAL ARG PHE LEU LYS THR SER GLU ASN ARG SEQRES 6 A 109 ALA GLU LEU ARG GLY LEU LYS ARG GLY ALA SER TYR LEU SEQRES 7 A 109 VAL GLN VAL ARG ALA ARG SER GLU ALA GLY TYR GLY PRO SEQRES 8 A 109 PHE GLY GLN GLU HIS HIS SER GLN THR GLN LEU ASP SER SEQRES 9 A 109 GLY PRO SER SER GLY SHEET 1 A 3 ARG A 15 SER A 20 0 SHEET 2 A 3 SER A 23 ALA A 27 -1 O ALA A 27 N ARG A 15 SHEET 3 A 3 ARG A 65 ARG A 69 -1 O ALA A 66 N LEU A 26 SHEET 1 B 4 ARG A 57 THR A 61 0 SHEET 2 B 4 ASP A 40 GLU A 47 -1 N TYR A 41 O THR A 61 SHEET 3 B 4 TYR A 77 ARG A 84 -1 O ARG A 84 N ASP A 40 SHEET 4 B 4 HIS A 96 HIS A 97 -1 O HIS A 96 N VAL A 79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1