HEADER STRUCTURAL PROTEIN 11-JAN-07 2E7M TITLE SOLUTION STRUCTURE OF THE PKD DOMAIN (329-428) FROM HUMAN KIAA0319 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KIAA0319; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PKD DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA0319; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P051121-06; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS PKD DOMAIN, PROTEIN KIAA0319 PRECURSOR, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL KEYWDS 4 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2E7M 1 REMARK REVDAT 3 09-MAR-22 2E7M 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E7M 1 VERSN REVDAT 1 17-JUL-07 2E7M 0 JRNL AUTH X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PKD DOMAIN (329-428) FROM HUMAN JRNL TITL 2 KIAA0319 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E7M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026326. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.16MM 13C,15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9816, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 28 105.53 -48.20 REMARK 500 1 PRO A 42 -165.66 -69.79 REMARK 500 1 GLU A 44 -69.37 -107.83 REMARK 500 1 LYS A 65 35.56 -99.32 REMARK 500 1 GLN A 66 26.89 39.48 REMARK 500 1 SER A 108 100.35 -53.33 REMARK 500 1 PRO A 110 -179.59 -69.72 REMARK 500 1 SER A 111 -59.58 -124.72 REMARK 500 2 SER A 5 123.83 -39.28 REMARK 500 2 PRO A 8 1.11 -69.71 REMARK 500 2 ASP A 28 103.07 -54.09 REMARK 500 2 PRO A 42 -173.94 -69.76 REMARK 500 2 GLU A 44 -69.00 -106.66 REMARK 500 2 TYR A 47 176.21 -59.28 REMARK 500 2 ALA A 106 107.36 -59.48 REMARK 500 3 SER A 2 -49.44 -130.72 REMARK 500 3 ASP A 28 102.82 -44.79 REMARK 500 3 PRO A 42 -167.64 -69.73 REMARK 500 3 GLN A 66 25.12 45.27 REMARK 500 3 GLN A 76 37.70 35.13 REMARK 500 3 VAL A 79 99.70 -65.93 REMARK 500 3 SER A 108 -50.89 -128.21 REMARK 500 4 ARG A 9 -41.31 -133.33 REMARK 500 4 ASP A 20 -179.61 -175.44 REMARK 500 4 LEU A 26 155.63 -47.69 REMARK 500 4 ASP A 28 96.17 -50.95 REMARK 500 4 PRO A 42 -173.41 -69.77 REMARK 500 4 GLU A 44 -73.87 -99.75 REMARK 500 4 GLN A 66 25.06 45.03 REMARK 500 5 PRO A 8 2.88 -69.75 REMARK 500 5 ASP A 28 96.13 -48.39 REMARK 500 5 PRO A 42 -174.03 -69.75 REMARK 500 5 GLN A 66 27.04 41.48 REMARK 500 5 GLN A 76 38.29 37.80 REMARK 500 5 ALA A 106 104.75 -58.37 REMARK 500 5 SER A 112 42.23 -98.91 REMARK 500 6 PRO A 8 80.63 -69.82 REMARK 500 6 ASP A 28 103.96 -45.64 REMARK 500 6 PRO A 42 -166.86 -69.78 REMARK 500 6 GLU A 44 -71.83 -73.29 REMARK 500 6 ARG A 107 34.97 -85.30 REMARK 500 7 ASP A 28 101.66 -41.91 REMARK 500 7 PRO A 42 -169.88 -69.78 REMARK 500 7 GLU A 44 -74.88 -80.70 REMARK 500 7 TYR A 47 179.38 -53.50 REMARK 500 7 GLN A 61 -32.24 -132.13 REMARK 500 7 GLN A 66 28.91 49.75 REMARK 500 7 VAL A 79 108.59 -49.25 REMARK 500 7 ALA A 106 106.12 -54.83 REMARK 500 7 SER A 111 41.28 36.71 REMARK 500 REMARK 500 THIS ENTRY HAS 145 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002100311.3 RELATED DB: TARGETDB DBREF 2E7M A 8 107 UNP Q5VV43 K0319_HUMAN 329 428 SEQADV 2E7M GLY A 1 UNP Q5VV43 CLONING ARTIFACT SEQADV 2E7M SER A 2 UNP Q5VV43 CLONING ARTIFACT SEQADV 2E7M SER A 3 UNP Q5VV43 CLONING ARTIFACT SEQADV 2E7M GLY A 4 UNP Q5VV43 CLONING ARTIFACT SEQADV 2E7M SER A 5 UNP Q5VV43 CLONING ARTIFACT SEQADV 2E7M SER A 6 UNP Q5VV43 CLONING ARTIFACT SEQADV 2E7M GLY A 7 UNP Q5VV43 CLONING ARTIFACT SEQADV 2E7M SER A 108 UNP Q5VV43 CLONING ARTIFACT SEQADV 2E7M GLY A 109 UNP Q5VV43 CLONING ARTIFACT SEQADV 2E7M PRO A 110 UNP Q5VV43 CLONING ARTIFACT SEQADV 2E7M SER A 111 UNP Q5VV43 CLONING ARTIFACT SEQADV 2E7M SER A 112 UNP Q5VV43 CLONING ARTIFACT SEQADV 2E7M GLY A 113 UNP Q5VV43 CLONING ARTIFACT SEQRES 1 A 113 GLY SER SER GLY SER SER GLY PRO ARG THR VAL LYS GLU SEQRES 2 A 113 LEU THR VAL SER ALA GLY ASP ASN LEU ILE ILE THR LEU SEQRES 3 A 113 PRO ASP ASN GLU VAL GLU LEU LYS ALA PHE VAL ALA PRO SEQRES 4 A 113 ALA PRO PRO VAL GLU THR THR TYR ASN TYR GLU TRP ASN SEQRES 5 A 113 LEU ILE SER HIS PRO THR ASP TYR GLN GLY GLU ILE LYS SEQRES 6 A 113 GLN GLY HIS LYS GLN THR LEU ASN LEU SER GLN LEU SER SEQRES 7 A 113 VAL GLY LEU TYR VAL PHE LYS VAL THR VAL SER SER GLU SEQRES 8 A 113 ASN ALA PHE GLY GLU GLY PHE VAL ASN VAL THR VAL LYS SEQRES 9 A 113 PRO ALA ARG SER GLY PRO SER SER GLY SHEET 1 A 3 LYS A 12 GLU A 13 0 SHEET 2 A 3 ALA A 93 GLU A 96 1 O PHE A 94 N LYS A 12 SHEET 3 A 3 THR A 87 SER A 90 -1 N VAL A 88 O GLY A 95 SHEET 1 B 2 THR A 15 SER A 17 0 SHEET 2 B 2 PHE A 36 ALA A 38 -1 O PHE A 36 N SER A 17 SHEET 1 C 4 LEU A 22 THR A 25 0 SHEET 2 C 4 VAL A 99 LYS A 104 1 O LYS A 104 N ILE A 24 SHEET 3 C 4 GLY A 80 PHE A 84 -1 N TYR A 82 O VAL A 101 SHEET 4 C 4 LEU A 53 SER A 55 -1 N SER A 55 O VAL A 83 SHEET 1 D 2 VAL A 31 LYS A 34 0 SHEET 2 D 2 THR A 71 LEU A 74 -1 O LEU A 72 N LEU A 33 CISPEP 1 LEU A 26 PRO A 27 1 -0.14 CISPEP 2 ALA A 38 PRO A 39 1 0.03 CISPEP 3 LEU A 26 PRO A 27 2 -0.06 CISPEP 4 ALA A 38 PRO A 39 2 -0.02 CISPEP 5 LEU A 26 PRO A 27 3 -0.20 CISPEP 6 ALA A 38 PRO A 39 3 -0.02 CISPEP 7 LEU A 26 PRO A 27 4 -0.11 CISPEP 8 ALA A 38 PRO A 39 4 0.06 CISPEP 9 LEU A 26 PRO A 27 5 -0.14 CISPEP 10 ALA A 38 PRO A 39 5 0.02 CISPEP 11 LEU A 26 PRO A 27 6 -0.07 CISPEP 12 ALA A 38 PRO A 39 6 0.00 CISPEP 13 LEU A 26 PRO A 27 7 -0.16 CISPEP 14 ALA A 38 PRO A 39 7 0.09 CISPEP 15 LEU A 26 PRO A 27 8 -0.13 CISPEP 16 ALA A 38 PRO A 39 8 0.08 CISPEP 17 LEU A 26 PRO A 27 9 -0.12 CISPEP 18 ALA A 38 PRO A 39 9 -0.01 CISPEP 19 LEU A 26 PRO A 27 10 -0.16 CISPEP 20 ALA A 38 PRO A 39 10 0.01 CISPEP 21 LEU A 26 PRO A 27 11 0.00 CISPEP 22 ALA A 38 PRO A 39 11 0.03 CISPEP 23 LEU A 26 PRO A 27 12 -0.13 CISPEP 24 ALA A 38 PRO A 39 12 -0.02 CISPEP 25 LEU A 26 PRO A 27 13 -0.10 CISPEP 26 ALA A 38 PRO A 39 13 0.01 CISPEP 27 LEU A 26 PRO A 27 14 -0.18 CISPEP 28 ALA A 38 PRO A 39 14 -0.01 CISPEP 29 LEU A 26 PRO A 27 15 -0.09 CISPEP 30 ALA A 38 PRO A 39 15 0.03 CISPEP 31 LEU A 26 PRO A 27 16 -0.12 CISPEP 32 ALA A 38 PRO A 39 16 -0.01 CISPEP 33 LEU A 26 PRO A 27 17 -0.15 CISPEP 34 ALA A 38 PRO A 39 17 -0.01 CISPEP 35 LEU A 26 PRO A 27 18 -0.16 CISPEP 36 ALA A 38 PRO A 39 18 0.05 CISPEP 37 LEU A 26 PRO A 27 19 -0.14 CISPEP 38 ALA A 38 PRO A 39 19 0.03 CISPEP 39 LEU A 26 PRO A 27 20 -0.14 CISPEP 40 ALA A 38 PRO A 39 20 -0.10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1