HEADER ISOMERASE 14-JAN-07 2E7U TITLE CRYSTAL STRUCTURE OF GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE FROM TITLE 2 THERMUS THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GSA, GLUTAMATE-1-SEMIALDEHYDE AMINOTRANSFERASE, GSA-AT; COMPND 5 EC: 5.4.3.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS PLP ENZYME, GSA, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.MIZUTANI,N.KUNISHIMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 4 25-OCT-23 2E7U 1 REMARK LINK REVDAT 3 13-JUL-11 2E7U 1 VERSN REVDAT 2 24-FEB-09 2E7U 1 VERSN REVDAT 1 17-JUL-07 2E7U 0 JRNL AUTH H.MIZUTANI,N.KUNISHIMA JRNL TITL CRYSTAL STRUCTURE OF GLUTAMATE-1-SEMIALDEHYDE JRNL TITL 2 2,1-AMINOMUTASE FROM THERMUS THERMOPHILUS HB8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 5261910.990 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 57792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2894 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9113 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE : 0.2140 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 453 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3255 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 427 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.74000 REMARK 3 B22 (A**2) : -5.74000 REMARK 3 B33 (A**2) : 11.48000 REMARK 3 B12 (A**2) : -2.81000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.880 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.090 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.560 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.000 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.050 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 66.96 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : PMP.PARAM REMARK 3 PARAMETER FILE 5 : GOL.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : PMP.TOP REMARK 3 TOPOLOGY FILE 5 : GOL.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : BENDING MAGNET REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57880 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : 0.35300 REMARK 200 FOR SHELL : 5.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4GSA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 3.0M NACL, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 90.33700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.15609 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 39.23333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 90.33700 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 52.15609 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 39.23333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 90.33700 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 52.15609 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 39.23333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 90.33700 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 52.15609 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 39.23333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 90.33700 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 52.15609 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 39.23333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 90.33700 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 52.15609 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.23333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 104.31218 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 78.46667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 104.31218 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 78.46667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 104.31218 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 78.46667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 104.31218 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 78.46667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 104.31218 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 78.46667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 104.31218 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 78.46667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED BY THE REMARK 300 OPERATION: Y, X, -Z+1. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 117.70000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1338 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1342 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 83 CD ARG A 83 NE -0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 147 32.62 -99.41 REMARK 500 ARG A 196 39.00 -157.07 REMARK 500 LYS A 266 -95.80 46.18 REMARK 500 PRO A 396 47.11 -77.36 REMARK 500 SER A 397 138.69 -172.52 REMARK 500 PHE A 399 52.94 -91.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1003 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 158 O REMARK 620 2 LEU A 160 O 97.3 REMARK 620 3 HOH A1053 O 86.1 92.5 REMARK 620 4 HOH A1078 O 172.7 75.9 96.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 211 O REMARK 620 2 PHE A 399 O 82.6 REMARK 620 3 HOH A1068 O 165.3 90.4 REMARK 620 4 HOH A1230 O 91.5 120.7 81.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003000223.1 RELATED DB: TARGETDB DBREF 2E7U A 1 424 UNP Q5SJS4 GSA_THET8 1 424 SEQRES 1 A 424 MET GLU ARG PRO ILE SER GLU ALA TYR PHE GLN GLU ALA SEQRES 2 A 424 LYS ARG HIS ILE PRO GLY GLY VAL SER SER PRO VAL ARG SEQRES 3 A 424 ALA PHE LYS ALA VAL GLY GLY THR PRO PRO PHE LEU VAL SEQRES 4 A 424 ARG GLY GLU GLY ALA TYR VAL TRP ASP ALA ASP GLY ASN SEQRES 5 A 424 ARG TYR LEU ASP TYR VAL MET SER TRP GLY PRO LEU ILE SEQRES 6 A 424 LEU GLY HIS ALA HIS PRO LYS VAL LEU ALA ARG VAL ARG SEQRES 7 A 424 GLU THR LEU GLU ARG GLY LEU THR PHE GLY ALA PRO SER SEQRES 8 A 424 PRO LEU GLU VAL ALA LEU ALA LYS LYS VAL LYS ARG ALA SEQRES 9 A 424 TYR PRO PHE VAL ASP LEU VAL ARG PHE VAL ASN SER GLY SEQRES 10 A 424 THR GLU ALA THR MET SER ALA LEU ARG LEU ALA ARG GLY SEQRES 11 A 424 TYR THR GLY ARG PRO TYR ILE VAL LYS PHE ARG GLY ASN SEQRES 12 A 424 TYR HIS GLY HIS ALA ASP GLY LEU LEU VAL GLU ALA GLY SEQRES 13 A 424 SER GLY ALA LEU THR LEU GLY VAL PRO SER SER ALA GLY SEQRES 14 A 424 VAL PRO GLU GLU TYR ALA LYS LEU THR LEU VAL LEU GLU SEQRES 15 A 424 TYR ASN ASP PRO GLU GLY LEU ARG GLU VAL LEU LYS ARG SEQRES 16 A 424 ARG GLY GLU GLU ILE ALA ALA ILE ILE PHE GLU PRO VAL SEQRES 17 A 424 VAL GLY ASN ALA GLY VAL LEU VAL PRO THR GLU ASP PHE SEQRES 18 A 424 LEU LYS ALA LEU HIS GLU ALA LYS ALA TYR GLY VAL LEU SEQRES 19 A 424 LEU ILE ALA ASP GLU VAL MET THR GLY PHE ARG LEU ALA SEQRES 20 A 424 PHE GLY GLY ALA THR GLU LEU LEU GLY LEU LYS PRO ASP SEQRES 21 A 424 LEU VAL THR LEU GLY LYS ILE LEU GLY GLY GLY LEU PRO SEQRES 22 A 424 ALA ALA ALA TYR ALA GLY ARG ARG GLU ILE MET GLU LYS SEQRES 23 A 424 VAL ALA PRO LEU GLY PRO VAL TYR GLN ALA GLY THR LEU SEQRES 24 A 424 SER GLY ASN PRO LEU ALA MET ALA ALA GLY LEU ALA THR SEQRES 25 A 424 LEU GLU LEU LEU GLU GLU ASN PRO GLY TYR TYR ALA TYR SEQRES 26 A 424 LEU GLU ASP LEU GLY ALA ARG LEU GLU ALA GLY LEU LYS SEQRES 27 A 424 GLU VAL LEU LYS GLU LYS GLY LEU PRO HIS THR VAL ASN SEQRES 28 A 424 ARG VAL GLY SER MET ILE THR VAL PHE PHE THR GLU GLY SEQRES 29 A 424 PRO VAL VAL THR PHE GLN ASP ALA ARG ARG THR ASP THR SEQRES 30 A 424 GLU LEU PHE LYS ARG PHE PHE HIS GLY LEU LEU ASP ARG SEQRES 31 A 424 GLY ILE TYR TRP PRO PRO SER ASN PHE GLU ALA ALA PHE SEQRES 32 A 424 LEU SER VAL ALA HIS ARG GLU GLU ASP VAL GLU LYS THR SEQRES 33 A 424 LEU GLU ALA LEU ARG LYS ALA LEU HET NA A1002 1 HET NA A1003 1 HET PMP A1001 16 HET GOL A1004 6 HETNAM NA SODIUM ION HETNAM PMP 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE HETNAM GOL GLYCEROL HETSYN PMP PYRIDOXAMINE-5'-PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NA 2(NA 1+) FORMUL 4 PMP C8 H13 N2 O5 P FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *427(H2 O) HELIX 1 1 ARG A 3 ILE A 17 1 15 HELIX 2 2 PRO A 18 VAL A 21 5 4 HELIX 3 3 SER A 23 PHE A 28 5 6 HELIX 4 4 VAL A 58 GLY A 62 5 5 HELIX 5 5 HIS A 70 ARG A 83 1 14 HELIX 6 6 SER A 91 TYR A 105 1 15 HELIX 7 7 SER A 116 GLY A 133 1 18 HELIX 8 8 ALA A 148 LEU A 151 5 4 HELIX 9 9 PRO A 171 LYS A 176 1 6 HELIX 10 10 ASP A 185 GLY A 197 1 13 HELIX 11 11 THR A 218 ALA A 228 1 11 HELIX 12 12 LYS A 229 GLY A 232 5 4 HELIX 13 13 GLY A 249 GLY A 256 1 8 HELIX 14 14 GLY A 265 GLY A 270 5 6 HELIX 15 15 ARG A 280 GLU A 285 1 6 HELIX 16 16 ASN A 302 ASN A 319 1 18 HELIX 17 17 PRO A 320 LYS A 344 1 25 HELIX 18 18 THR A 368 ARG A 373 1 6 HELIX 19 19 ASP A 376 ASP A 389 1 14 HELIX 20 20 ARG A 409 LEU A 424 1 16 SHEET 1 A 4 LEU A 38 GLU A 42 0 SHEET 2 A 4 TYR A 45 ASP A 48 -1 O TYR A 45 N GLU A 42 SHEET 3 A 4 ARG A 53 ASP A 56 -1 O TYR A 54 N VAL A 46 SHEET 4 A 4 ILE A 392 TYR A 393 1 O TYR A 393 N LEU A 55 SHEET 1 B 7 LEU A 110 VAL A 114 0 SHEET 2 B 7 ALA A 275 GLY A 279 -1 O ALA A 275 N VAL A 114 SHEET 3 B 7 LEU A 261 LEU A 264 -1 N LEU A 264 O ALA A 276 SHEET 4 B 7 LEU A 234 ASP A 238 1 N ALA A 237 O LEU A 261 SHEET 5 B 7 ILE A 200 PHE A 205 1 N ILE A 203 O ILE A 236 SHEET 6 B 7 TYR A 136 PHE A 140 1 N TYR A 136 O ALA A 201 SHEET 7 B 7 THR A 178 LEU A 181 1 O LEU A 179 N ILE A 137 SHEET 1 C 2 VAL A 153 GLU A 154 0 SHEET 2 C 2 VAL A 164 PRO A 165 -1 O VAL A 164 N GLU A 154 SHEET 1 D 3 THR A 349 VAL A 353 0 SHEET 2 D 3 MET A 356 PHE A 360 -1 O PHE A 360 N THR A 349 SHEET 3 D 3 ALA A 402 PHE A 403 -1 O ALA A 402 N ILE A 357 LINK O GLY A 158 NA NA A1003 1555 1555 2.45 LINK O LEU A 160 NA NA A1003 1555 1555 2.23 LINK O ASN A 211 NA NA A1002 1555 1555 2.20 LINK O PHE A 399 NA NA A1002 1555 1555 2.34 LINK NA NA A1002 O HOH A1068 1555 1555 2.46 LINK NA NA A1002 O HOH A1230 1555 1555 2.55 LINK NA NA A1003 O HOH A1053 1555 1555 2.38 LINK NA NA A1003 O HOH A1078 1555 1555 2.58 CISPEP 1 ALA A 288 PRO A 289 0 0.42 CISPEP 2 GLY A 364 PRO A 365 0 -0.20 SITE 1 AC1 5 ASN A 211 PHE A 399 GLU A 400 HOH A1068 SITE 2 AC1 5 HOH A1230 SITE 1 AC2 6 GLY A 156 GLY A 158 LEU A 160 HOH A1053 SITE 2 AC2 6 HOH A1078 HOH A1210 SITE 1 AC3 12 SER A 116 GLY A 117 THR A 118 TYR A 144 SITE 2 AC3 12 HIS A 145 ASN A 211 ASP A 238 VAL A 240 SITE 3 AC3 12 MET A 241 GLY A 297 THR A 298 HOH A1071 SITE 1 AC4 4 ARG A 103 ALA A 104 GLU A 253 HOH A1214 CRYST1 180.674 180.674 117.700 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005535 0.003196 0.000000 0.00000 SCALE2 0.000000 0.006391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008496 0.00000