HEADER LYASE 15-JAN-07 2E7Z TITLE ACETYLENE HYDRATASE FROM PELOBACTER ACETYLENICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLENE HYDRATASE AHY; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.1.71 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PELOBACTER ACETYLENICUS; SOURCE 3 ORGANISM_TAXID: 29542; SOURCE 4 STRAIN: WOACY KEYWDS TUNGSTOPROTEIN, DMSO REDUCTASE FAMILY, IRON-SULFUR-CLUSTER, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR O.EINSLE,P.M.H.KRONECK,G.B.SEIFFERT,A.MESSERSCHMIDT REVDAT 5 04-SEP-19 2E7Z 1 REMARK LINK ATOM REVDAT 4 11-OCT-17 2E7Z 1 REMARK REVDAT 3 24-FEB-09 2E7Z 1 VERSN REVDAT 2 27-MAR-07 2E7Z 1 JRNL REVDAT 1 27-FEB-07 2E7Z 0 JRNL AUTH G.B.SEIFFERT,G.M.ULLMANN,A.MESSERSCHMIDT,B.SCHINK, JRNL AUTH 2 P.M.H.KRONECK,O.EINSLE JRNL TITL STRUCTURE OF THE NON-REDOX-ACTIVE TUNGSTEN/[4FE:4S] ENZYME JRNL TITL 2 ACETYLENE HYDRATASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 3073 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17360611 JRNL DOI 10.1073/PNAS.0610407104 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH O.EINSLE,H.NIESSEN,D.J.ABT,G.SEIFFERT,B.SCHINK,R.HUBER, REMARK 1 AUTH 2 A.MESSERSCHMIDT,P.M.H.KRONECK REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF THE REMARK 1 TITL 2 TUNGSTEN-DEPENDENT ACETYLENE HYDRATASE FROM PELOBACTER REMARK 1 TITL 3 ACETYLENICUS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 61 299 2005 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 16511024 REMARK 1 DOI 10.1107/S174430910500374X REMARK 2 REMARK 2 RESOLUTION. 1.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 184521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9771 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 13041 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 688 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5738 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.66000 REMARK 3 B22 (A**2) : 1.20000 REMARK 3 B33 (A**2) : -0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.020 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8035 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10980 ; 1.412 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 991 ; 6.011 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 354 ;38.061 ;24.746 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1325 ;12.631 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;20.072 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1177 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6149 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3155 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4207 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 849 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.307 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 74 ; 0.252 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 52 ; 0.179 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.390 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4865 ; 1.091 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7868 ; 1.663 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3334 ; 2.662 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3090 ; 3.796 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2E7Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-06; 02-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG; EMBL/DESY, REMARK 200 HAMBURG REMARK 200 BEAMLINE : BW6; X11 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.738; 1.05 REMARK 200 MONOCHROMATOR : GRAPHITE; GRAPHITE REMARK 200 OPTICS : MIRRORS; MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM; MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 194301 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.260 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 1.850 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.65 REMARK 200 R MERGE FOR SHELL (I) : 0.33300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 8000, 0.3M MGACETATE, 0.1M REMARK 280 NACACODYLATE, 0.04M NAAZIDE, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.38800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.98550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.38800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.98550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1467 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1635 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1614 O HOH A 1777 1.79 REMARK 500 O HOH A 1039 O HOH A 1663 1.91 REMARK 500 SG CYS A 680 O HOH A 1006 1.91 REMARK 500 CD2 HIS A 633 O HOH A 1608 1.91 REMARK 500 O HOH A 1193 O HOH A 1748 1.96 REMARK 500 O HOH A 1521 O HOH A 1752 1.98 REMARK 500 O HOH A 1490 O HOH A 1772 1.98 REMARK 500 O HOH A 1396 O HOH A 1880 2.08 REMARK 500 O HOH A 1021 O HOH A 1679 2.10 REMARK 500 NE2 HIS A 633 O HOH A 1608 2.15 REMARK 500 O HOH A 1396 O HOH A 1748 2.16 REMARK 500 O HOH A 1282 O HOH A 1286 2.16 REMARK 500 O HOH A 1193 O HOH A 1880 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1651 O HOH A 1777 2656 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 523 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 117 -6.76 -140.34 REMARK 500 CYS A 141 99.81 -161.60 REMARK 500 ILE A 142 -45.25 80.45 REMARK 500 ILE A 142 -45.25 79.88 REMARK 500 HIS A 153 24.83 -147.60 REMARK 500 LYS A 172 67.50 63.02 REMARK 500 LYS A 172 74.24 59.99 REMARK 500 ARG A 203 85.09 -50.85 REMARK 500 GLU A 286 57.10 -93.36 REMARK 500 MET A 299 42.18 -140.08 REMARK 500 THR A 359 -56.57 -126.20 REMARK 500 MET A 387 -74.06 70.84 REMARK 500 PHE A 390 68.07 62.09 REMARK 500 TYR A 423 -141.95 -132.85 REMARK 500 ASN A 425 62.01 39.26 REMARK 500 LEU A 605 95.77 75.79 REMARK 500 GLN A 612 -126.19 53.58 REMARK 500 ASP A 664 -68.99 -123.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 800 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 SF4 A 800 S2 121.4 REMARK 620 3 SF4 A 800 S3 96.3 105.7 REMARK 620 4 SF4 A 800 S4 120.1 105.4 105.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 800 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 9 SG REMARK 620 2 SF4 A 800 S1 110.6 REMARK 620 3 SF4 A 800 S3 113.8 105.2 REMARK 620 4 SF4 A 800 S4 114.8 106.1 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 800 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 16 SG REMARK 620 2 SF4 A 800 S1 110.2 REMARK 620 3 SF4 A 800 S2 117.9 105.8 REMARK 620 4 SF4 A 800 S4 111.5 105.5 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 800 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 12 SG REMARK 620 2 SF4 A 800 S1 117.3 REMARK 620 3 SF4 A 800 S2 105.5 106.2 REMARK 620 4 SF4 A 800 S3 116.4 104.7 105.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 W A 803 W REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MGD A 801 S12 REMARK 620 2 MGD A 802 S12 147.2 REMARK 620 3 MGD A 802 S12 165.3 18.7 REMARK 620 4 MGD A 802 S13 92.5 77.0 85.5 REMARK 620 5 CYS A 141 SG 104.6 95.0 81.4 157.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 404 OE2 REMARK 620 2 HOH A1144 O 89.7 REMARK 620 3 HOH A1550 O 88.5 90.9 REMARK 620 4 ACT A1003 O 93.8 176.2 87.7 REMARK 620 5 HOH A1551 O 178.0 90.8 89.5 85.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MGD A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MGD A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1005 DBREF 2E7Z A 4 730 UNP Q71EW5 Q71EW5_9DELT 4 730 SEQRES 1 A 727 LYS LYS HIS VAL VAL CYS GLN SER CYS ASP ILE ASN CYS SEQRES 2 A 727 VAL VAL GLU ALA GLU VAL LYS ALA ASP GLY LYS ILE GLN SEQRES 3 A 727 THR LYS SER ILE SER GLU PRO HIS PRO THR THR PRO PRO SEQRES 4 A 727 ASN SER ILE CYS MET LYS SER VAL ASN ALA ASP THR ILE SEQRES 5 A 727 ARG THR HIS LYS ASP ARG VAL LEU TYR PRO LEU LYS ASN SEQRES 6 A 727 VAL GLY SER LYS ARG GLY GLU GLN ARG TRP GLU ARG ILE SEQRES 7 A 727 SER TRP ASP GLN ALA LEU ASP GLU ILE ALA GLU LYS LEU SEQRES 8 A 727 LYS LYS ILE ILE ALA LYS TYR GLY PRO GLU SER LEU GLY SEQRES 9 A 727 VAL SER GLN THR GLU ILE ASN GLN GLN SER GLU TYR GLY SEQRES 10 A 727 THR LEU ARG ARG PHE MET ASN LEU LEU GLY SER PRO ASN SEQRES 11 A 727 TRP THR SER ALA MET TYR MET CYS ILE GLY ASN THR ALA SEQRES 12 A 727 GLY VAL HIS ARG VAL THR HIS GLY SER TYR SER PHE ALA SEQRES 13 A 727 SER PHE ALA ASP SER ASN CYS LEU LEU PHE ILE GLY LYS SEQRES 14 A 727 ASN LEU SER ASN HIS ASN TRP VAL SER GLN PHE ASN ASP SEQRES 15 A 727 LEU LYS ALA ALA LEU LYS ARG GLY CYS LYS LEU ILE VAL SEQRES 16 A 727 LEU ASP PRO ARG ARG THR LYS VAL ALA GLU MET ALA ASP SEQRES 17 A 727 ILE TRP LEU PRO LEU ARG TYR GLY THR ASP ALA ALA LEU SEQRES 18 A 727 PHE LEU GLY MET ILE ASN VAL ILE ILE ASN GLU GLN LEU SEQRES 19 A 727 TYR ASP LYS GLU PHE VAL GLU ASN TRP CYS VAL GLY PHE SEQRES 20 A 727 GLU GLU LEU LYS GLU ARG VAL GLN GLU TYR PRO LEU ASP SEQRES 21 A 727 LYS VAL ALA GLU ILE THR GLY CYS ASP ALA GLY GLU ILE SEQRES 22 A 727 ARG LYS ALA ALA VAL MET PHE ALA THR GLU SER PRO ALA SEQRES 23 A 727 SER ILE PRO TRP ALA VAL SER THR ASP MET GLN LYS ASN SEQRES 24 A 727 SER CYS SER ALA ILE ARG ALA GLN CYS ILE LEU ARG ALA SEQRES 25 A 727 ILE VAL GLY SER PHE VAL ASN GLY ALA GLU ILE LEU GLY SEQRES 26 A 727 ALA PRO HIS SER ASP LEU VAL PRO ILE SER LYS ILE GLN SEQRES 27 A 727 MET HIS GLU ALA LEU PRO GLU GLU LYS LYS LYS LEU GLN SEQRES 28 A 727 LEU GLY THR GLU THR TYR PRO PHE LEU THR TYR THR GLY SEQRES 29 A 727 MET SER ALA LEU GLU GLU PRO SER GLU ARG VAL TYR GLY SEQRES 30 A 727 VAL LYS TYR PHE HIS ASN MET GLY ALA PHE MET ALA ASN SEQRES 31 A 727 PRO THR ALA LEU PHE THR ALA MET ALA THR GLU LYS PRO SEQRES 32 A 727 TYR PRO VAL LYS ALA PHE PHE ALA LEU ALA SER ASN ALA SEQRES 33 A 727 LEU MET GLY TYR ALA ASN GLN GLN ASN ALA LEU LYS GLY SEQRES 34 A 727 LEU MET ASN GLN ASP LEU VAL VAL CYS TYR ASP GLN PHE SEQRES 35 A 727 MET THR PRO THR ALA GLN LEU ALA ASP TYR VAL LEU PRO SEQRES 36 A 727 GLY ASP HIS TRP LEU GLU ARG PRO VAL VAL GLN PRO ASN SEQRES 37 A 727 TRP GLU GLY ILE PRO PHE GLY ASN THR SER GLN GLN VAL SEQRES 38 A 727 VAL GLU PRO ALA GLY GLU ALA LYS ASP GLU TYR TYR PHE SEQRES 39 A 727 ILE ARG GLU LEU ALA VAL ARG MET GLY LEU GLU GLU HIS SEQRES 40 A 727 PHE PRO TRP LYS ASP ARG LEU GLU LEU ILE ASN TYR ARG SEQRES 41 A 727 ILE SER PRO THR GLY MET GLU TRP GLU GLU TYR GLN LYS SEQRES 42 A 727 GLN TYR THR TYR MET SER LYS LEU PRO ASP TYR PHE GLY SEQRES 43 A 727 PRO GLU GLY VAL GLY VAL ALA THR PRO SER GLY LYS VAL SEQRES 44 A 727 GLU LEU TYR SER SER VAL PHE GLU LYS LEU GLY TYR ASP SEQRES 45 A 727 PRO LEU PRO TYR TYR HIS GLU PRO LEU GLN THR GLU ILE SEQRES 46 A 727 SER ASP PRO GLU LEU ALA LYS GLU TYR PRO LEU ILE LEU SEQRES 47 A 727 PHE ALA GLY LEU ARG GLU ASP SER ASN PHE GLN SER CYS SEQRES 48 A 727 TYR HIS GLN PRO GLY ILE LEU ARG ASP ALA GLU PRO ASP SEQRES 49 A 727 PRO VAL ALA LEU LEU HIS PRO LYS THR ALA GLN SER LEU SEQRES 50 A 727 GLY LEU PRO SER GLY GLU TRP ILE TRP VAL GLU THR THR SEQRES 51 A 727 HIS GLY ARG LEU LYS LEU LEU LEU LYS HIS ASP GLY ALA SEQRES 52 A 727 GLN PRO GLU GLY THR ILE ARG ILE PRO HIS GLY ARG TRP SEQRES 53 A 727 CYS PRO GLU GLN GLU GLY GLY PRO GLU THR GLY PHE SER SEQRES 54 A 727 GLY ALA MET LEU HIS ASN ASP ALA MET VAL LEU SER ASP SEQRES 55 A 727 ASP ASP TRP ASN LEU ASP PRO GLU GLN GLY LEU PRO ASN SEQRES 56 A 727 LEU ARG GLY GLY ILE LEU ALA LYS ALA TYR LYS CYS HET NA A1001 1 HET ACT A1003 4 HET SF4 A 800 8 HET MGD A 801 47 HET MGD A 802 94 HET W A 803 1 HET MPD A1004 8 HET MPD A1005 8 HETNAM NA SODIUM ION HETNAM ACT ACETATE ION HETNAM SF4 IRON/SULFUR CLUSTER HETNAM MGD 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8- HETNAM 2 MGD OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE HETNAM 3 MGD DINUCLEOTIDE HETNAM W TUNGSTEN ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN MGD MOLYBDOPTERIN GUANOSINE DINUCLEOTIDE FORMUL 2 NA NA 1+ FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 SF4 FE4 S4 FORMUL 5 MGD 2(C20 H26 N10 O13 P2 S2) FORMUL 7 W W 6+ FORMUL 8 MPD 2(C6 H14 O2) FORMUL 10 HOH *880(H2 O) HELIX 1 1 CYS A 46 ASN A 51 1 6 HELIX 2 2 ASN A 51 THR A 57 1 7 HELIX 3 3 SER A 82 GLY A 102 1 21 HELIX 4 4 GLU A 112 GLN A 115 5 4 HELIX 5 5 GLY A 120 GLY A 130 1 11 HELIX 6 6 SER A 136 CYS A 141 5 6 HELIX 7 7 ILE A 142 GLY A 154 1 13 HELIX 8 8 TRP A 179 ARG A 192 1 14 HELIX 9 9 THR A 204 ALA A 210 1 7 HELIX 10 10 THR A 220 GLU A 235 1 16 HELIX 11 11 ASP A 239 TRP A 246 1 8 HELIX 12 12 GLY A 249 GLN A 258 1 10 HELIX 13 13 PRO A 261 GLY A 270 1 10 HELIX 14 14 ASP A 272 GLU A 286 1 15 HELIX 15 15 VAL A 295 MET A 299 5 5 HELIX 16 16 ASN A 302 GLY A 318 1 17 HELIX 17 17 PRO A 336 GLN A 341 1 6 HELIX 18 18 MET A 342 LEU A 346 5 5 HELIX 19 19 PRO A 347 GLN A 354 1 8 HELIX 20 20 TYR A 360 LEU A 363 5 4 HELIX 21 21 THR A 364 SER A 369 1 6 HELIX 22 22 LEU A 371 GLY A 380 1 10 HELIX 23 23 ASN A 393 GLU A 404 1 12 HELIX 24 24 ASN A 418 GLY A 422 5 5 HELIX 25 25 ASN A 425 ASN A 435 1 11 HELIX 26 26 THR A 449 ALA A 453 5 5 HELIX 27 27 HIS A 461 ARG A 465 5 5 HELIX 28 28 ASP A 493 MET A 505 1 13 HELIX 29 29 LEU A 507 PHE A 511 5 5 HELIX 30 30 ASP A 515 ILE A 524 1 10 HELIX 31 31 SER A 525 GLY A 528 5 4 HELIX 32 32 GLU A 530 GLN A 535 1 6 HELIX 33 33 SER A 566 GLY A 573 1 8 HELIX 34 34 ASP A 590 TYR A 597 1 8 HELIX 35 35 GLY A 619 GLU A 625 1 7 HELIX 36 36 HIS A 633 GLY A 641 1 9 HELIX 37 37 GLY A 686 GLY A 690 5 5 HELIX 38 38 GLY A 693 ASN A 698 1 6 HELIX 39 39 ASP A 699 LEU A 703 5 5 HELIX 40 40 ASP A 706 LEU A 710 5 5 SHEET 1 A 3 LYS A 5 VAL A 8 0 SHEET 2 A 3 VAL A 17 VAL A 22 -1 O VAL A 18 N VAL A 7 SHEET 3 A 3 ILE A 28 SER A 32 -1 O LYS A 31 N GLU A 19 SHEET 1 B 7 TRP A 78 ARG A 80 0 SHEET 2 B 7 LEU A 66 ASN A 68 -1 N LYS A 67 O GLU A 79 SHEET 3 B 7 TYR A 455 PRO A 458 -1 O VAL A 456 N LEU A 66 SHEET 4 B 7 LEU A 438 ASP A 443 1 N CYS A 441 O LEU A 457 SHEET 5 B 7 ALA A 411 LEU A 415 1 N ALA A 414 O TYR A 442 SHEET 6 B 7 LEU A 106 GLN A 110 1 N GLY A 107 O ALA A 411 SHEET 7 B 7 TRP A 134 THR A 135 1 O THR A 135 N VAL A 108 SHEET 1 C 2 SER A 157 ALA A 159 0 SHEET 2 C 2 GLU A 325 LEU A 327 -1 O ILE A 326 N PHE A 158 SHEET 1 D 4 ILE A 212 LEU A 214 0 SHEET 2 D 4 LYS A 195 LEU A 199 1 N VAL A 198 O LEU A 214 SHEET 3 D 4 CYS A 166 ILE A 170 1 N PHE A 169 O ILE A 197 SHEET 4 D 4 ALA A 289 SER A 290 1 O SER A 290 N CYS A 166 SHEET 1 E 2 CYS A 247 VAL A 248 0 SHEET 2 E 2 VAL A 562 GLU A 563 1 O VAL A 562 N VAL A 248 SHEET 1 F 2 PHE A 477 ASN A 479 0 SHEET 2 F 2 THR A 539 MET A 541 -1 O TYR A 540 N GLY A 478 SHEET 1 G 7 LEU A 599 ALA A 603 0 SHEET 2 G 7 THR A 671 ILE A 674 1 O ILE A 672 N PHE A 602 SHEET 3 G 7 VAL A 629 LEU A 632 -1 N LEU A 631 O ARG A 673 SHEET 4 G 7 ARG A 656 HIS A 663 1 O LEU A 660 N ALA A 630 SHEET 5 G 7 TRP A 647 GLU A 651 -1 N ILE A 648 O LEU A 659 SHEET 6 G 7 ARG A 720 LYS A 729 -1 O TYR A 728 N TRP A 649 SHEET 7 G 7 LEU A 599 ALA A 603 -1 N LEU A 599 O ALA A 725 LINK FE1 SF4 A 800 SG CYS A 46 1555 1555 2.30 LINK FE2 SF4 A 800 SG CYS A 9 1555 1555 2.31 LINK FE3 SF4 A 800 SG CYS A 16 1555 1555 2.30 LINK FE4 SF4 A 800 SG CYS A 12 1555 1555 2.28 LINK O3'BMGD A 802 OD2AASP A 200 1555 1555 1.80 LINK O2'AMGD A 802 CD BARG A 202 1555 1555 2.17 LINK O6 BMGD A 802 NE2AGLN A 300 1555 1555 1.60 LINK N1 BMGD A 802 OD1AASP A 221 1555 1555 1.53 LINK N2 BMGD A 802 OD2AASP A 221 1555 1555 1.46 LINK S12 MGD A 801 W W A 803 1555 1555 2.34 LINK S12AMGD A 802 W W A 803 1555 1555 2.49 LINK S12BMGD A 802 W W A 803 1555 1555 2.34 LINK S13BMGD A 802 W W A 803 1555 1555 2.15 LINK W W A 803 SG ACYS A 141 1555 1555 2.34 LINK OE2 GLU A 404 NA NA A1001 1555 1555 2.06 LINK NA NA A1001 O HOH A1144 1555 1555 2.07 LINK NA NA A1001 O HOH A1550 1555 1555 2.17 LINK NA NA A1001 O ACT A1003 1555 1555 2.12 LINK NA NA A1001 O HOH A1551 1555 1555 2.11 CISPEP 1 SER A 287 PRO A 288 0 -4.69 CISPEP 2 SER A 287 PRO A 288 0 -5.28 CISPEP 3 LYS A 405 PRO A 406 0 2.75 CISPEP 4 GLN A 469 PRO A 470 0 1.53 SITE 1 AC1 6 GLU A 404 ASP A 706 ACT A1003 HOH A1144 SITE 2 AC1 6 HOH A1550 HOH A1551 SITE 1 AC2 8 GLU A 404 THR A 653 ASP A 706 TRP A 708 SITE 2 AC2 8 NA A1001 HOH A1492 HOH A1550 HOH A1551 SITE 1 AC3 10 CYS A 9 SER A 11 CYS A 12 ILE A 14 SITE 2 AC3 10 ASN A 15 CYS A 16 CYS A 46 SER A 49 SITE 3 AC3 10 TRP A 179 VAL A 180 SITE 1 AC4 39 THR A 111 ASN A 114 ALA A 137 MET A 140 SITE 2 AC4 39 CYS A 141 VAL A 295 MET A 299 ALA A 416 SITE 3 AC4 39 SER A 417 ASN A 418 GLY A 422 TYR A 423 SITE 4 AC4 39 TYR A 442 ASP A 443 GLN A 444 THR A 447 SITE 5 AC4 39 ASP A 460 ARG A 465 ARG A 606 GLN A 612 SITE 6 AC4 39 SER A 613 CYS A 614 HIS A 676 ASP A 699 SITE 7 AC4 39 LEU A 703 LEU A 719 MGD A 802 W A 803 SITE 8 AC4 39 HOH A1048 HOH A1051 HOH A1054 HOH A1055 SITE 9 AC4 39 HOH A1079 HOH A1155 HOH A1209 HOH A1224 SITE 10 AC4 39 HOH A1251 HOH A1496 HOH A1862 SITE 1 AC5 42 ASP A 13 LYS A 48 CYS A 141 ILE A 170 SITE 2 AC5 42 GLY A 171 LYS A 172 ASN A 173 HIS A 177 SITE 3 AC5 42 ASN A 178 TRP A 179 LEU A 199 ASP A 200 SITE 4 AC5 42 PRO A 201 ARG A 202 THR A 204 LEU A 216 SITE 5 AC5 42 TYR A 218 GLY A 219 ASP A 221 TRP A 293 SITE 6 AC5 42 VAL A 295 SER A 296 GLN A 300 PHE A 602 SITE 7 AC5 42 GLY A 604 LEU A 605 ARG A 606 GLU A 607 SITE 8 AC5 42 ASP A 608 ASN A 610 PHE A 611 GLN A 612 SITE 9 AC5 42 ARG A 720 MGD A 801 W A 803 HOH A1044 SITE 10 AC5 42 HOH A1110 HOH A1136 HOH A1146 HOH A1150 SITE 11 AC5 42 HOH A1250 HOH A1862 SITE 1 AC6 4 CYS A 141 MGD A 801 MGD A 802 HOH A1862 SITE 1 AC7 8 ILE A 14 ASN A 15 THR A 39 THR A 40 SITE 2 AC7 8 SER A 181 GLN A 182 ASP A 185 PHE A 477 SITE 1 AC8 5 ILE A 14 PHE A 158 HOH A1192 HOH A1502 SITE 2 AC8 5 HOH A1627 CRYST1 120.776 71.971 106.760 90.00 124.26 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008280 0.000000 0.005640 0.00000 SCALE2 0.000000 0.013894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011333 0.00000