data_2E9J # _entry.id 2E9J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2E9J pdb_00002e9j 10.2210/pdb2e9j/pdb RCSB RCSB026395 ? ? WWPDB D_1000026395 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003002600.13 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2E9J _pdbx_database_status.recvd_initial_deposition_date 2007-01-25 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tomizawa, T.' 1 'Koshiba, S.' 2 'Watanabe, S.' 3 'Harada, T.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structure of the 14th filamin domain from human Filamin-B' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tomizawa, T.' 1 ? primary 'Koshiba, S.' 2 ? primary 'Watanabe, S.' 3 ? primary 'Harada, T.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Filamin-B _entity.formula_weight 12423.787 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'filamin domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;FLN-B, Beta-filamin, Actin-binding-like protein, Thyroid autoantigen, Truncated actin-binding protein, Truncated ABP, ABP- 280 homolog, ABP-278, Filamin 3, Filamin homolog 1, Fh1 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGRSPFKVKVLPTYDASKVTASGPGLSSYGVPASLPVDFAIDARDAGEGLLAVQITDQEGKPKRAIVHDNKDGTY AVTYIPDKTGRYMIGVTYGGDDIPLSPYRIRATQTGDAS ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGRSPFKVKVLPTYDASKVTASGPGLSSYGVPASLPVDFAIDARDAGEGLLAVQITDQEGKPKRAIVHDNKDGTY AVTYIPDKTGRYMIGVTYGGDDIPLSPYRIRATQTGDAS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003002600.13 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ARG n 1 9 SER n 1 10 PRO n 1 11 PHE n 1 12 LYS n 1 13 VAL n 1 14 LYS n 1 15 VAL n 1 16 LEU n 1 17 PRO n 1 18 THR n 1 19 TYR n 1 20 ASP n 1 21 ALA n 1 22 SER n 1 23 LYS n 1 24 VAL n 1 25 THR n 1 26 ALA n 1 27 SER n 1 28 GLY n 1 29 PRO n 1 30 GLY n 1 31 LEU n 1 32 SER n 1 33 SER n 1 34 TYR n 1 35 GLY n 1 36 VAL n 1 37 PRO n 1 38 ALA n 1 39 SER n 1 40 LEU n 1 41 PRO n 1 42 VAL n 1 43 ASP n 1 44 PHE n 1 45 ALA n 1 46 ILE n 1 47 ASP n 1 48 ALA n 1 49 ARG n 1 50 ASP n 1 51 ALA n 1 52 GLY n 1 53 GLU n 1 54 GLY n 1 55 LEU n 1 56 LEU n 1 57 ALA n 1 58 VAL n 1 59 GLN n 1 60 ILE n 1 61 THR n 1 62 ASP n 1 63 GLN n 1 64 GLU n 1 65 GLY n 1 66 LYS n 1 67 PRO n 1 68 LYS n 1 69 ARG n 1 70 ALA n 1 71 ILE n 1 72 VAL n 1 73 HIS n 1 74 ASP n 1 75 ASN n 1 76 LYS n 1 77 ASP n 1 78 GLY n 1 79 THR n 1 80 TYR n 1 81 ALA n 1 82 VAL n 1 83 THR n 1 84 TYR n 1 85 ILE n 1 86 PRO n 1 87 ASP n 1 88 LYS n 1 89 THR n 1 90 GLY n 1 91 ARG n 1 92 TYR n 1 93 MET n 1 94 ILE n 1 95 GLY n 1 96 VAL n 1 97 THR n 1 98 TYR n 1 99 GLY n 1 100 GLY n 1 101 ASP n 1 102 ASP n 1 103 ILE n 1 104 PRO n 1 105 LEU n 1 106 SER n 1 107 PRO n 1 108 TYR n 1 109 ARG n 1 110 ILE n 1 111 ARG n 1 112 ALA n 1 113 THR n 1 114 GLN n 1 115 THR n 1 116 GLY n 1 117 ASP n 1 118 ALA n 1 119 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene FLNB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P060619-05 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FLNB_HUMAN _struct_ref.pdbx_db_accession O75369 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RSPFKVKVLPTYDASKVTASGPGLSSYGVPASLPVDFAIDARDAGEGLLAVQITDQEGKPKRAIVHDNKDGTYAVTYIPD KTGRYMIGVTYGGDDIPLSPYRIRATQTGDAS ; _struct_ref.pdbx_align_begin 1504 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2E9J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 119 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O75369 _struct_ref_seq.db_align_beg 1504 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1615 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 119 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2E9J GLY A 1 ? UNP O75369 ? ? 'cloning artifact' 1 1 1 2E9J SER A 2 ? UNP O75369 ? ? 'cloning artifact' 2 2 1 2E9J SER A 3 ? UNP O75369 ? ? 'cloning artifact' 3 3 1 2E9J GLY A 4 ? UNP O75369 ? ? 'cloning artifact' 4 4 1 2E9J SER A 5 ? UNP O75369 ? ? 'cloning artifact' 5 5 1 2E9J SER A 6 ? UNP O75369 ? ? 'cloning artifact' 6 6 1 2E9J GLY A 7 ? UNP O75369 ? ? 'cloning artifact' 7 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.19mM filamin domain U-15N, 13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE II' _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 900 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2E9J _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2E9J _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2E9J _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection TopSpin 1.3 Bruker 1 processing NMRPipe 20060524 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9747 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2E9J _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2E9J _struct.title 'Solution structure of the 14th filamin domain from human Filamin-B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2E9J _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text ;beta-sandwich, immunoglobulin-like fold, filamin, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, STRUCTURAL PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 20 ? SER A 22 ? ASP A 20 SER A 22 5 ? 3 HELX_P HELX_P2 2 GLY A 28 ? SER A 32 ? GLY A 28 SER A 32 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 1 -0.02 2 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 2 0.03 3 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 3 -0.05 4 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 4 0.03 5 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 5 0.06 6 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 6 -0.08 7 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 7 -0.06 8 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 8 0.07 9 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 9 0.05 10 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 10 -0.09 11 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 11 -0.04 12 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 12 0.03 13 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 13 -0.05 14 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 14 -0.06 15 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 15 -0.05 16 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 16 -0.06 17 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 17 -0.05 18 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 18 0.01 19 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 19 -0.13 20 SER 106 A . ? SER 106 A PRO 107 A ? PRO 107 A 20 -0.02 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 24 ? SER A 27 ? VAL A 24 SER A 27 A 2 VAL A 42 ? ALA A 48 ? VAL A 42 ALA A 48 A 3 THR A 79 ? TYR A 84 ? THR A 79 TYR A 84 A 4 ALA A 70 ? ASP A 74 ? ALA A 70 ASP A 74 B 1 VAL A 36 ? PRO A 37 ? VAL A 36 PRO A 37 B 2 TYR A 108 ? THR A 113 ? TYR A 108 THR A 113 B 3 ARG A 91 ? ILE A 94 ? ARG A 91 ILE A 94 B 4 ILE A 60 ? THR A 61 ? ILE A 60 THR A 61 C 1 LEU A 56 ? ALA A 57 ? LEU A 56 ALA A 57 C 2 THR A 97 ? TYR A 98 ? THR A 97 TYR A 98 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 27 ? N SER A 27 O ALA A 45 ? O ALA A 45 A 2 3 N VAL A 42 ? N VAL A 42 O TYR A 84 ? O TYR A 84 A 3 4 O ALA A 81 ? O ALA A 81 N HIS A 73 ? N HIS A 73 B 1 2 N VAL A 36 ? N VAL A 36 O THR A 113 ? O THR A 113 B 2 3 O ILE A 110 ? O ILE A 110 N TYR A 92 ? N TYR A 92 B 3 4 O MET A 93 ? O MET A 93 N THR A 61 ? N THR A 61 C 1 2 N ALA A 57 ? N ALA A 57 O THR A 97 ? O THR A 97 # _database_PDB_matrix.entry_id 2E9J _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2E9J _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 HIS 73 73 73 HIS HIS A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 ARG 91 91 91 ARG ARG A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 MET 93 93 93 MET MET A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 PRO 104 104 104 PRO PRO A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 GLN 114 114 114 GLN GLN A . n A 1 115 THR 115 115 115 THR THR A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 SER 119 119 119 SER SER A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-07-31 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 14 ? ? -109.04 42.23 2 1 ASP A 20 ? ? -168.66 106.67 3 1 LYS A 23 ? ? -89.76 30.47 4 1 PRO A 41 ? ? -69.77 97.58 5 1 LEU A 55 ? ? -47.14 108.41 6 1 PRO A 86 ? ? -69.71 97.32 7 1 THR A 89 ? ? -49.12 172.98 8 1 PRO A 104 ? ? -69.78 1.28 9 2 PRO A 41 ? ? -69.75 98.48 10 2 PRO A 104 ? ? -69.74 2.94 11 2 PRO A 107 ? ? -69.77 -177.39 12 2 GLN A 114 ? ? -92.90 44.20 13 3 LYS A 23 ? ? -87.98 33.59 14 3 PRO A 41 ? ? -69.72 97.17 15 3 PRO A 86 ? ? -69.81 97.73 16 3 PRO A 104 ? ? -69.79 3.41 17 3 PRO A 107 ? ? -69.75 -179.32 18 3 GLN A 114 ? ? -78.27 46.57 19 4 SER A 2 ? ? -172.99 142.66 20 4 PRO A 41 ? ? -69.71 97.81 21 4 LEU A 55 ? ? -59.25 106.62 22 4 PRO A 86 ? ? -69.75 91.14 23 4 ASP A 87 ? ? -93.84 33.33 24 4 PRO A 104 ? ? -69.74 3.07 25 5 SER A 9 ? ? -172.73 143.39 26 5 PRO A 10 ? ? -69.77 -165.74 27 5 SER A 39 ? ? 36.21 37.76 28 5 PRO A 41 ? ? -69.77 98.01 29 5 LEU A 55 ? ? -51.55 105.99 30 5 PRO A 86 ? ? -69.79 88.14 31 5 PRO A 104 ? ? -69.75 3.01 32 5 PRO A 107 ? ? -69.79 -176.94 33 6 SER A 2 ? ? -168.82 118.68 34 6 ARG A 8 ? ? -172.75 107.13 35 6 PHE A 11 ? ? 38.25 41.54 36 6 LYS A 12 ? ? -84.10 41.79 37 6 SER A 39 ? ? 38.93 45.81 38 6 PRO A 41 ? ? -69.77 98.40 39 6 LEU A 55 ? ? -67.01 99.37 40 6 PRO A 86 ? ? -69.82 98.44 41 6 PRO A 104 ? ? -69.72 2.74 42 6 PRO A 107 ? ? -69.71 -177.25 43 7 SER A 6 ? ? -103.50 -64.14 44 7 PRO A 10 ? ? -69.75 92.73 45 7 PHE A 11 ? ? -174.28 118.64 46 7 LYS A 23 ? ? -91.24 33.45 47 7 SER A 39 ? ? 38.58 43.74 48 7 PRO A 41 ? ? -69.79 97.42 49 7 PRO A 86 ? ? -69.75 93.43 50 7 PRO A 104 ? ? -69.81 3.20 51 8 SER A 2 ? ? -170.21 130.28 52 8 SER A 5 ? ? -172.18 106.68 53 8 VAL A 13 ? ? -37.91 117.12 54 8 PRO A 41 ? ? -69.72 98.05 55 8 PRO A 104 ? ? -69.74 4.07 56 8 PRO A 107 ? ? -69.80 -176.37 57 8 THR A 115 ? ? -130.53 -43.20 58 9 PRO A 41 ? ? -69.76 96.16 59 9 PRO A 86 ? ? -69.80 98.24 60 9 PRO A 104 ? ? -69.76 5.56 61 9 PRO A 107 ? ? -69.81 -179.04 62 9 ALA A 118 ? ? -131.00 -58.15 63 10 SER A 9 ? ? -48.02 158.62 64 10 LYS A 23 ? ? -87.52 34.79 65 10 PRO A 41 ? ? -69.74 98.49 66 10 PRO A 86 ? ? -69.77 88.58 67 10 PRO A 104 ? ? -69.75 2.73 68 10 PRO A 107 ? ? -69.70 -179.28 69 11 SER A 3 ? ? -104.99 -61.78 70 11 LYS A 23 ? ? -85.91 32.00 71 11 PRO A 41 ? ? -69.74 98.10 72 11 THR A 89 ? ? -48.18 160.93 73 11 PRO A 104 ? ? -69.74 2.77 74 11 PRO A 107 ? ? -69.74 -179.12 75 12 SER A 39 ? ? 37.28 38.98 76 12 PRO A 41 ? ? -69.77 96.35 77 12 PRO A 86 ? ? -69.72 95.05 78 12 PRO A 104 ? ? -69.76 3.03 79 12 PRO A 107 ? ? -69.80 -176.67 80 12 ALA A 118 ? ? -43.37 157.76 81 13 SER A 3 ? ? -108.95 -61.22 82 13 SER A 9 ? ? -163.56 111.87 83 13 VAL A 13 ? ? -39.21 125.13 84 13 LEU A 55 ? ? -52.66 109.53 85 13 PRO A 104 ? ? -69.69 3.38 86 13 PRO A 107 ? ? -69.72 -179.08 87 13 THR A 115 ? ? -170.62 149.62 88 14 SER A 39 ? ? 35.28 39.69 89 14 PRO A 41 ? ? -69.75 96.55 90 14 PRO A 86 ? ? -69.73 93.11 91 14 PRO A 104 ? ? -69.79 6.36 92 14 PRO A 107 ? ? -69.76 -176.58 93 15 PHE A 11 ? ? -53.56 175.29 94 15 VAL A 13 ? ? -173.53 126.32 95 15 LEU A 55 ? ? -58.41 106.59 96 15 PRO A 86 ? ? -69.76 89.86 97 15 PRO A 104 ? ? -69.78 2.26 98 16 PRO A 10 ? ? -69.73 -171.88 99 16 LYS A 23 ? ? -88.20 30.13 100 16 SER A 39 ? ? 35.55 42.97 101 16 PRO A 41 ? ? -69.74 99.33 102 16 PRO A 107 ? ? -69.72 -177.25 103 17 SER A 32 ? ? -34.09 117.64 104 17 ALA A 38 ? ? -59.57 173.31 105 17 SER A 39 ? ? 34.82 41.48 106 17 PRO A 41 ? ? -69.78 99.31 107 17 LEU A 55 ? ? -56.72 107.63 108 17 PRO A 86 ? ? -69.78 81.82 109 17 PRO A 104 ? ? -69.76 4.65 110 17 PRO A 107 ? ? -69.75 -176.07 111 18 PRO A 10 ? ? -69.77 -169.27 112 18 LYS A 14 ? ? -102.88 75.28 113 18 SER A 39 ? ? 44.76 29.23 114 18 PRO A 41 ? ? -69.73 98.31 115 18 LYS A 76 ? ? 31.20 38.29 116 18 PRO A 107 ? ? -69.79 -177.66 117 18 ASP A 117 ? ? 37.08 41.05 118 18 ALA A 118 ? ? -90.85 -62.16 119 19 PRO A 10 ? ? -69.77 -172.52 120 19 PHE A 11 ? ? -163.52 116.10 121 19 LYS A 14 ? ? -68.77 84.10 122 19 ASP A 20 ? ? -160.28 119.64 123 19 PRO A 41 ? ? -69.75 97.73 124 19 PRO A 104 ? ? -69.79 3.90 125 19 PRO A 107 ? ? -69.65 -179.64 126 19 THR A 113 ? ? -59.87 103.68 127 19 THR A 115 ? ? -125.33 -57.31 128 20 PRO A 10 ? ? -69.77 -172.29 129 20 LEU A 16 ? ? -34.91 144.92 130 20 LYS A 23 ? ? -83.91 33.17 131 20 SER A 39 ? ? 39.69 40.06 132 20 PRO A 41 ? ? -69.76 97.68 133 20 PRO A 104 ? ? -69.77 5.96 134 20 PRO A 107 ? ? -69.78 -176.92 #