HEADER HYDROLASE 25-JAN-07 2E9L TITLE CRYSTAL STRUCTURE OF HUMAN CYTOSOLIC NEUTRAL BETA-GLYCOSYLCERAMIDASE TITLE 2 (KLOTHO-RELATED PROTE:KLRP) COMPLEX WITH GLUCOSE AND FATTY ACIDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSOLIC BETA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOSOLIC NEUTRAL BETA-GLYCOSYLCERAMIDASE, KLOTHO-RELATED COMPND 5 PROTEIN, KLRP, CYTOSOLIC BETA-GLUCOSIDASE- LIKE PROTEIN 1; COMPND 6 EC: 3.2.1.21; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23B KEYWDS NOVEL CYTOSOLIC NEUTRAL BETA-GLYCOSYLCERAMIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KAKUTA,Y.HAYASHI,N.OKINO,M.ITO REVDAT 6 25-OCT-23 2E9L 1 HETSYN REVDAT 5 29-JUL-20 2E9L 1 COMPND REMARK HETNAM SITE REVDAT 4 13-JUL-11 2E9L 1 VERSN REVDAT 3 24-FEB-09 2E9L 1 VERSN REVDAT 2 16-SEP-08 2E9L 1 JRNL REVDAT 1 11-SEP-07 2E9L 0 JRNL AUTH Y.HAYASHI,N.OKINO,Y.KAKUTA,T.SHIKANAI,M.TANI,H.NARIMATSU, JRNL AUTH 2 M.ITO JRNL TITL KLOTHO-RELATED PROTEIN IS A NOVEL CYTOSOLIC NEUTRAL JRNL TITL 2 BETA-GLYCOSYLCERAMIDASE. JRNL REF J.BIOL.CHEM. V. 282 30889 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17595169 JRNL DOI 10.1074/JBC.M700832200 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 3 NUMBER OF REFLECTIONS : 59292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3201 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4585 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 259 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3778 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.530 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4118 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5591 ; 1.228 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 505 ;10.947 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;35.672 ;24.532 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 668 ;13.134 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.216 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 570 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3177 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2165 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2816 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 390 ; 0.110 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.240 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.093 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2429 ; 0.609 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3859 ; 0.818 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1952 ; 1.357 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1712 ; 2.055 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2E9L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026397. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 446923 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : 0.13300 REMARK 200 FOR THE DATA SET : 44.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.42100 REMARK 200 R SYM FOR SHELL (I) : 0.42100 REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1WCG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27.5% PEG3350, 0.1M TRIS-HCL BUFFER, REMARK 280 PH 8.5, 0.2M MAGNESIUM CHLORIDE, 5% GLYCEROL, 0.5M GLUCOSE , PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.4K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.01750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.44100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.98800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.44100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.01750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.98800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 467 REMARK 465 HIS A 468 REMARK 465 LEU A 469 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 466 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 3478 O HOH A 3649 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 182 N - CA - C ANGL. DEV. = -20.6 DEGREES REMARK 500 ALA A 382 N - CA - C ANGL. DEV. = -21.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 44 125.15 -39.97 REMARK 500 ALA A 52 -125.99 49.30 REMARK 500 GLU A 165 64.68 36.74 REMARK 500 THR A 188 -52.16 -124.40 REMARK 500 ASP A 261 12.65 -145.93 REMARK 500 ASP A 344 -129.43 48.45 REMARK 500 ASP A 344 -127.49 45.19 REMARK 500 TRP A 425 -126.98 45.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 181 GLY A 182 105.31 REMARK 500 PRO A 381 ALA A 382 -112.01 REMARK 500 SER A 418 LEU A 419 139.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2E9M RELATED DB: PDB DBREF 2E9L A 1 469 UNP Q9H227 GBA3_HUMAN 1 469 SEQRES 1 A 469 MET ALA PHE PRO ALA GLY PHE GLY TRP ALA ALA ALA THR SEQRES 2 A 469 ALA ALA TYR GLN VAL GLU GLY GLY TRP ASP ALA ASP GLY SEQRES 3 A 469 LYS GLY PRO CYS VAL TRP ASP THR PHE THR HIS GLN GLY SEQRES 4 A 469 GLY GLU ARG VAL PHE LYS ASN GLN THR GLY ASP VAL ALA SEQRES 5 A 469 CYS GLY SER TYR THR LEU TRP GLU GLU ASP LEU LYS CYS SEQRES 6 A 469 ILE LYS GLN LEU GLY LEU THR HIS TYR ARG PHE SER LEU SEQRES 7 A 469 SER TRP SER ARG LEU LEU PRO ASP GLY THR THR GLY PHE SEQRES 8 A 469 ILE ASN GLN LYS GLY ILE ASP TYR TYR ASN LYS ILE ILE SEQRES 9 A 469 ASP ASP LEU LEU LYS ASN GLY VAL THR PRO ILE VAL THR SEQRES 10 A 469 LEU TYR HIS PHE ASP LEU PRO GLN THR LEU GLU ASP GLN SEQRES 11 A 469 GLY GLY TRP LEU SER GLU ALA ILE ILE GLU SER PHE ASP SEQRES 12 A 469 LYS TYR ALA GLN PHE CYS PHE SER THR PHE GLY ASP ARG SEQRES 13 A 469 VAL LYS GLN TRP ILE THR ILE ASN GLU ALA ASN VAL LEU SEQRES 14 A 469 SER VAL MET SER TYR ASP LEU GLY MET PHE PRO PRO GLY SEQRES 15 A 469 ILE PRO HIS PHE GLY THR GLY GLY TYR GLN ALA ALA HIS SEQRES 16 A 469 ASN LEU ILE LYS ALA HIS ALA ARG SER TRP HIS SER TYR SEQRES 17 A 469 ASP SER LEU PHE ARG LYS LYS GLN LYS GLY MET VAL SER SEQRES 18 A 469 LEU SER LEU PHE ALA VAL TRP LEU GLU PRO ALA ASP PRO SEQRES 19 A 469 ASN SER VAL SER ASP GLN GLU ALA ALA LYS ARG ALA ILE SEQRES 20 A 469 THR PHE HIS LEU ASP LEU PHE ALA LYS PRO ILE PHE ILE SEQRES 21 A 469 ASP GLY ASP TYR PRO GLU VAL VAL LYS SER GLN ILE ALA SEQRES 22 A 469 SER MET SER GLN LYS GLN GLY TYR PRO SER SER ARG LEU SEQRES 23 A 469 PRO GLU PHE THR GLU GLU GLU LYS LYS MET ILE LYS GLY SEQRES 24 A 469 THR ALA ASP PHE PHE ALA VAL GLN TYR TYR THR THR ARG SEQRES 25 A 469 LEU ILE LYS TYR GLN GLU ASN LYS LYS GLY GLU LEU GLY SEQRES 26 A 469 ILE LEU GLN ASP ALA GLU ILE GLU PHE PHE PRO ASP PRO SEQRES 27 A 469 SER TRP LYS ASN VAL ASP TRP ILE TYR VAL VAL PRO TRP SEQRES 28 A 469 GLY VAL CYS LYS LEU LEU LYS TYR ILE LYS ASP THR TYR SEQRES 29 A 469 ASN ASN PRO VAL ILE TYR ILE THR GLU ASN GLY PHE PRO SEQRES 30 A 469 GLN SER ASP PRO ALA PRO LEU ASP ASP THR GLN ARG TRP SEQRES 31 A 469 GLU TYR PHE ARG GLN THR PHE GLN GLU LEU PHE LYS ALA SEQRES 32 A 469 ILE GLN LEU ASP LYS VAL ASN LEU GLN VAL TYR CYS ALA SEQRES 33 A 469 TRP SER LEU LEU ASP ASN PHE GLU TRP ASN GLN GLY TYR SEQRES 34 A 469 SER SER ARG PHE GLY LEU PHE HIS VAL ASP PHE GLU ASP SEQRES 35 A 469 PRO ALA ARG PRO ARG VAL PRO TYR THR SER ALA LYS GLU SEQRES 36 A 469 TYR ALA LYS ILE ILE ARG ASN ASN GLY LEU GLU ALA HIS SEQRES 37 A 469 LEU HET BGC A1401 12 HET PLM A1001 36 HET OLA A2001 20 HET PLM A1101 18 HET GOL A3001 6 HET GOL A3101 6 HET GOL A3201 6 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM PLM PALMITIC ACID HETNAM OLA OLEIC ACID HETNAM GOL GLYCEROL HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 BGC C6 H12 O6 FORMUL 3 PLM 2(C16 H32 O2) FORMUL 4 OLA C18 H34 O2 FORMUL 6 GOL 3(C3 H8 O3) FORMUL 9 HOH *450(H2 O) HELIX 1 1 ALA A 14 GLU A 19 1 6 HELIX 2 2 ASP A 23 LYS A 27 5 5 HELIX 3 3 CYS A 30 GLY A 39 1 10 HELIX 4 4 VAL A 43 GLN A 47 5 5 HELIX 5 5 LEU A 58 GLY A 70 1 13 HELIX 6 6 SER A 79 LEU A 84 1 6 HELIX 7 7 ASN A 93 ASN A 110 1 18 HELIX 8 8 PRO A 124 GLN A 130 1 7 HELIX 9 9 GLY A 131 GLU A 136 5 6 HELIX 10 10 ALA A 137 GLY A 154 1 18 HELIX 11 11 GLU A 165 ASP A 175 1 11 HELIX 12 12 THR A 188 PHE A 212 1 25 HELIX 13 13 PHE A 212 LYS A 217 1 6 HELIX 14 14 SER A 236 LEU A 251 1 16 HELIX 15 15 LEU A 251 ILE A 260 1 10 HELIX 16 16 PRO A 265 GLN A 279 1 15 HELIX 17 17 THR A 290 LYS A 298 1 9 HELIX 18 18 GLY A 325 GLU A 331 1 7 HELIX 19 19 PRO A 350 TYR A 364 1 15 HELIX 20 20 ASP A 386 LEU A 406 1 21 HELIX 21 21 GLU A 424 TYR A 429 5 6 HELIX 22 22 TYR A 450 ASN A 463 1 14 SHEET 1 A 9 MET A 219 SER A 221 0 SHEET 2 A 9 GLN A 159 ILE A 163 1 N THR A 162 O SER A 221 SHEET 3 A 9 THR A 113 TYR A 119 1 N VAL A 116 O ILE A 161 SHEET 4 A 9 HIS A 73 SER A 77 1 N PHE A 76 O THR A 117 SHEET 5 A 9 GLY A 8 ALA A 12 1 N ALA A 11 O ARG A 75 SHEET 6 A 9 LEU A 411 TRP A 417 1 O TYR A 414 N ALA A 10 SHEET 7 A 9 ILE A 369 ASN A 374 1 N ILE A 371 O VAL A 413 SHEET 8 A 9 PHE A 304 TYR A 316 1 N PHE A 304 O TYR A 370 SHEET 9 A 9 SER A 223 PRO A 231 1 N GLU A 230 O ILE A 314 SHEET 1 B 9 MET A 219 SER A 221 0 SHEET 2 B 9 GLN A 159 ILE A 163 1 N THR A 162 O SER A 221 SHEET 3 B 9 THR A 113 TYR A 119 1 N VAL A 116 O ILE A 161 SHEET 4 B 9 HIS A 73 SER A 77 1 N PHE A 76 O THR A 117 SHEET 5 B 9 GLY A 8 ALA A 12 1 N ALA A 11 O ARG A 75 SHEET 6 B 9 LEU A 411 TRP A 417 1 O TYR A 414 N ALA A 10 SHEET 7 B 9 ILE A 369 ASN A 374 1 N ILE A 371 O VAL A 413 SHEET 8 B 9 PHE A 304 TYR A 316 1 N PHE A 304 O TYR A 370 SHEET 9 B 9 ILE A 332 PHE A 335 -1 O PHE A 335 N LEU A 313 SHEET 1 C 2 ASN A 342 VAL A 343 0 SHEET 2 C 2 ILE A 346 TYR A 347 -1 O ILE A 346 N VAL A 343 SHEET 1 D 2 GLN A 378 SER A 379 0 SHEET 2 D 2 SER A 431 ARG A 432 -1 O ARG A 432 N GLN A 378 SHEET 1 E 2 PHE A 436 VAL A 438 0 SHEET 2 E 2 ARG A 447 PRO A 449 -1 O VAL A 448 N HIS A 437 CISPEP 1 PRO A 180 PRO A 181 0 9.51 CISPEP 2 ASP A 380 PRO A 381 0 1.23 CISPEP 3 TRP A 417 SER A 418 0 8.62 CRYST1 66.035 83.976 94.882 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015143 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010539 0.00000