HEADER TRANSFERASE 06-FEB-07 2EB3 TITLE CRYSTAL STRUCTURE OF MUTATED EGFR KINASE DOMAIN (L858R) IN COMPLEX TITLE 2 WITH AMPPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, UNP RESIDUES 695-1022; COMPND 5 SYNONYM: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-1; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PFASTBAC_HT_C KEYWDS KINASE, TYROSINE-PROTEIN KINASE, RECEPTOR, TRANSFERASE, KEYWDS 2 PHOSPHORYLATION, ATP-BINDING, DISEASE MUTATION, TRANSMEMBRANE, CELL KEYWDS 3 CYCLE, EC 2.7.10.1, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 4 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 5 GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR S.YOSHIKAWA,M.KUKIMOTO-NIINO,M.SHIROUZU,K.SENBA,T.YAMAMOTO, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 25-OCT-23 2EB3 1 REMARK SEQADV REVDAT 3 07-MAR-12 2EB3 1 JRNL VERSN REVDAT 2 24-FEB-09 2EB3 1 VERSN REVDAT 1 12-FEB-08 2EB3 0 JRNL AUTH S.YOSHIKAWA,M.KUKIMOTO-NIINO,L.PARKER,N.HANDA,T.TERADA, JRNL AUTH 2 T.FUJIMOTO,Y.TERAZAWA,M.WAKIYAMA,M.SATO,S.SANO,T.KOBAYASHI, JRNL AUTH 3 T.TANAKA,L.CHEN,Z.J.LIU,B.C.WANG,M.SHIROUZU,S.KAWA,K.SEMBA, JRNL AUTH 4 T.YAMAMOTO,S.YOKOYAMA JRNL TITL STRUCTURAL BASIS FOR THE ALTERED DRUG SENSITIVITIES OF JRNL TITL 2 NON-SMALL CELL LUNG CANCER-ASSOCIATED MUTANTS OF HUMAN JRNL TITL 3 EPIDERMAL GROWTH FACTOR RECEPTOR JRNL REF ONCOGENE 2012 JRNL REFN ESSN 1476-5594 JRNL PMID 22349823 JRNL DOI 10.1038/ONC.2012.21 REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 58204.110 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 11733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1224 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1591 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 186 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2365 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.38 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.48 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.050 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 6.890 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 9.750 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 10.690; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 13.140; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 43.76 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ANP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ANP.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EB3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026451. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12050 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.840 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 29.42 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 53.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 29.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.81400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.833 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2GS2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 28% PEG 3000, PH 8.7, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 72.34300 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.34300 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 72.34300 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 72.34300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 72.34300 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 72.34300 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 72.34300 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 72.34300 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 72.34300 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 72.34300 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 72.34300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.34300 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 72.34300 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 72.34300 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 72.34300 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 72.34300 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 72.34300 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 72.34300 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 72.34300 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 72.34300 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 72.34300 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 72.34300 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 72.34300 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 72.34300 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 72.34300 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 72.34300 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 72.34300 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 72.34300 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 72.34300 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 72.34300 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 72.34300 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 72.34300 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 72.34300 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 72.34300 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 72.34300 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 72.34300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 72.34300 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -72.34300 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 -72.34300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 689 REMARK 465 ALA A 690 REMARK 465 MET A 691 REMARK 465 GLY A 692 REMARK 465 ILE A 693 REMARK 465 ARG A 694 REMARK 465 SER A 695 REMARK 465 GLY A 721 REMARK 465 LEU A 862 REMARK 465 GLY A 863 REMARK 465 ALA A 864 REMARK 465 GLU A 865 REMARK 465 GLU A 866 REMARK 465 LYS A 867 REMARK 465 GLU A 868 REMARK 465 TYR A 869 REMARK 465 HIS A 870 REMARK 465 ALA A 871 REMARK 465 GLU A 872 REMARK 465 GLY A 873 REMARK 465 GLY A 874 REMARK 465 LYS A 875 REMARK 465 SER A 991 REMARK 465 PRO A 992 REMARK 465 THR A 993 REMARK 465 ASP A 994 REMARK 465 SER A 995 REMARK 465 ASN A 996 REMARK 465 PHE A 997 REMARK 465 TYR A 998 REMARK 465 ARG A 999 REMARK 465 ALA A 1000 REMARK 465 LEU A 1001 REMARK 465 MET A 1002 REMARK 465 ASP A 1003 REMARK 465 GLU A 1004 REMARK 465 PRO A 1019 REMARK 465 GLN A 1020 REMARK 465 GLN A 1021 REMARK 465 GLY A 1022 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 932 O TRP A 951 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 697 -136.49 -116.00 REMARK 500 GLU A 709 -38.41 -35.69 REMARK 500 LYS A 716 148.47 -172.63 REMARK 500 PHE A 723 52.40 -154.85 REMARK 500 PRO A 733 139.22 -34.80 REMARK 500 GLU A 734 -100.41 -4.98 REMARK 500 ARG A 748 159.01 -48.48 REMARK 500 GLU A 749 2.46 -49.52 REMARK 500 THR A 751 72.30 173.58 REMARK 500 PRO A 753 -17.08 -38.25 REMARK 500 ASP A 770 88.36 -160.75 REMARK 500 LYS A 806 -70.94 -29.83 REMARK 500 ASP A 807 -3.30 -45.44 REMARK 500 ARG A 832 37.00 38.54 REMARK 500 ASP A 837 50.66 -155.09 REMARK 500 PHE A 856 44.19 -96.53 REMARK 500 ARG A 858 -3.76 -51.21 REMARK 500 ARG A 889 41.75 29.98 REMARK 500 ALA A 920 -35.32 -36.57 REMARK 500 ILE A 926 -70.46 -47.19 REMARK 500 ASP A 974 62.65 -158.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EB2 RELATED DB: PDB REMARK 900 MUTATED EGFR KINASE DOMAIN(G719S) REMARK 900 RELATED ID: 3VJO RELATED DB: PDB REMARK 900 WILD-TYPE EGFR KINASE DOMAIN IN COMPLEX WITH AMPPNP REMARK 900 RELATED ID: 3VJN RELATED DB: PDB REMARK 900 MUTATED EGFR KINASE DOMAIN (G719S/T790M) IN COMPLEX WITH AMPPNP REMARK 900 RELATED ID: 3UG1 RELATED DB: PDB REMARK 900 MUTATED EGFR KINASE DOMAIN (G719S/T790M) IN THE APO FORM REMARK 900 RELATED ID: 3UG2 RELATED DB: PDB REMARK 900 MUTATED EGFR KINASE DOMAIN (G719S/T790M) IN COMPLEX WITH GEFITINIB REMARK 900 RELATED ID: AR_001000562.2 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RESIDUE IS SOMATIC MUTATION IN LUNG CANCER. DBREF 2EB3 A 695 1022 UNP P00533 EGFR_HUMAN 695 1022 SEQADV 2EB3 GLY A 689 UNP P00533 EXPRESSION TAG SEQADV 2EB3 ALA A 690 UNP P00533 EXPRESSION TAG SEQADV 2EB3 MET A 691 UNP P00533 EXPRESSION TAG SEQADV 2EB3 GLY A 692 UNP P00533 EXPRESSION TAG SEQADV 2EB3 ILE A 693 UNP P00533 EXPRESSION TAG SEQADV 2EB3 ARG A 694 UNP P00533 EXPRESSION TAG SEQADV 2EB3 ARG A 858 UNP P00533 LEU 858 SEE REMARK 999 SEQRES 1 A 334 GLY ALA MET GLY ILE ARG SER GLY GLU ALA PRO ASN GLN SEQRES 2 A 334 ALA LEU LEU ARG ILE LEU LYS GLU THR GLU PHE LYS LYS SEQRES 3 A 334 ILE LYS VAL LEU GLY SER GLY ALA PHE GLY THR VAL TYR SEQRES 4 A 334 LYS GLY LEU TRP ILE PRO GLU GLY GLU LYS VAL LYS ILE SEQRES 5 A 334 PRO VAL ALA ILE LYS GLU LEU ARG GLU ALA THR SER PRO SEQRES 6 A 334 LYS ALA ASN LYS GLU ILE LEU ASP GLU ALA TYR VAL MET SEQRES 7 A 334 ALA SER VAL ASP ASN PRO HIS VAL CYS ARG LEU LEU GLY SEQRES 8 A 334 ILE CYS LEU THR SER THR VAL GLN LEU ILE THR GLN LEU SEQRES 9 A 334 MET PRO PHE GLY CYS LEU LEU ASP TYR VAL ARG GLU HIS SEQRES 10 A 334 LYS ASP ASN ILE GLY SER GLN TYR LEU LEU ASN TRP CYS SEQRES 11 A 334 VAL GLN ILE ALA LYS GLY MET ASN TYR LEU GLU ASP ARG SEQRES 12 A 334 ARG LEU VAL HIS ARG ASP LEU ALA ALA ARG ASN VAL LEU SEQRES 13 A 334 VAL LYS THR PRO GLN HIS VAL LYS ILE THR ASP PHE GLY SEQRES 14 A 334 ARG ALA LYS LEU LEU GLY ALA GLU GLU LYS GLU TYR HIS SEQRES 15 A 334 ALA GLU GLY GLY LYS VAL PRO ILE LYS TRP MET ALA LEU SEQRES 16 A 334 GLU SER ILE LEU HIS ARG ILE TYR THR HIS GLN SER ASP SEQRES 17 A 334 VAL TRP SER TYR GLY VAL THR VAL TRP GLU LEU MET THR SEQRES 18 A 334 PHE GLY SER LYS PRO TYR ASP GLY ILE PRO ALA SER GLU SEQRES 19 A 334 ILE SER SER ILE LEU GLU LYS GLY GLU ARG LEU PRO GLN SEQRES 20 A 334 PRO PRO ILE CYS THR ILE ASP VAL TYR MET ILE MET VAL SEQRES 21 A 334 LYS CYS TRP MET ILE ASP ALA ASP SER ARG PRO LYS PHE SEQRES 22 A 334 ARG GLU LEU ILE ILE GLU PHE SER LYS MET ALA ARG ASP SEQRES 23 A 334 PRO GLN ARG TYR LEU VAL ILE GLN GLY ASP GLU ARG MET SEQRES 24 A 334 HIS LEU PRO SER PRO THR ASP SER ASN PHE TYR ARG ALA SEQRES 25 A 334 LEU MET ASP GLU GLU ASP MET ASP ASP VAL VAL ASP ALA SEQRES 26 A 334 ASP GLU TYR LEU ILE PRO GLN GLN GLY HET ANP A2001 31 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 HOH *(H2 O) HELIX 1 1 LYS A 708 THR A 710 5 3 HELIX 2 2 LYS A 754 SER A 768 1 15 HELIX 3 3 CYS A 797 LYS A 806 1 10 HELIX 4 4 ASP A 807 ILE A 809 5 3 HELIX 5 5 GLY A 810 ARG A 831 1 22 HELIX 6 6 ALA A 839 ARG A 841 5 3 HELIX 7 7 PRO A 877 MET A 881 5 5 HELIX 8 8 ALA A 882 ARG A 889 1 8 HELIX 9 9 THR A 892 THR A 909 1 18 HELIX 10 10 GLU A 922 GLY A 930 1 9 HELIX 11 11 THR A 940 TRP A 951 1 12 HELIX 12 12 ASP A 954 ARG A 958 5 5 HELIX 13 13 LYS A 960 ARG A 973 1 14 HELIX 14 14 ASP A 974 LEU A 979 1 6 HELIX 15 15 GLY A 983 MET A 987 5 5 HELIX 16 16 ASP A 1012 TYR A 1016 5 5 SHEET 1 A 5 PHE A 712 GLY A 719 0 SHEET 2 A 5 GLY A 724 TRP A 731 -1 O LYS A 728 N LYS A 716 SHEET 3 A 5 ILE A 740 LEU A 747 -1 O VAL A 742 N GLY A 729 SHEET 4 A 5 VAL A 786 GLN A 791 -1 O THR A 790 N ALA A 743 SHEET 5 A 5 LEU A 777 LEU A 782 -1 N LEU A 778 O ILE A 789 SHEET 1 B 2 VAL A 843 THR A 847 0 SHEET 2 B 2 HIS A 850 ILE A 853 -1 O LYS A 852 N LEU A 844 SITE 1 AC1 8 VAL A 726 ALA A 743 LYS A 745 THR A 790 SITE 2 AC1 8 GLN A 791 MET A 793 LEU A 844 ASP A 855 CRYST1 144.686 144.686 144.686 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006912 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006912 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006912 0.00000