HEADER BLOOD CLOTTING 13-FEB-07 2EC9 TITLE CRYSTAL STRUCTURE ANALYSIS OF HUMAN FACTOR VIIA , SOULUBLE TISSUE TITLE 2 FACTOR COMPLEXED WITH BCX-3607 CAVEAT 2EC9 CGU L 16 HAS WRONG CHIRALITY AT ATOM CA CGU L 19 HAS WRONG CAVEAT 2 2EC9 CHIRALITY AT ATOM CA CGU L 29 HAS WRONG CHIRALITY AT ATOM CAVEAT 3 2EC9 CA ASO L 1052 HAS WRONG CHIRALITY AT ATOM C2 ASO L 1052 HAS CAVEAT 4 2EC9 WRONG CHIRALITY AT ATOM C4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR VII; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: RESIDUES 1-142; COMPND 5 SYNONYM: SERUM PROTHROMBIN CONVERSION ACCELERATOR, SPCA, COMPND 6 PROCONVERTIN, EPTACOG ALFA; COMPND 7 EC: 3.4.21.21; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: COAGULATION FACTOR VII; COMPND 11 CHAIN: H; COMPND 12 FRAGMENT: RESIDUES 16-257; COMPND 13 SYNONYM: SERUM PROTHROMBIN CONVERSION ACCELERATOR, SPCA, COMPND 14 PROCONVERTIN, EPTACOG ALFA; COMPND 15 EC: 3.4.21.21; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 3; COMPND 18 MOLECULE: TISSUE FACTOR; COMPND 19 CHAIN: T; COMPND 20 FRAGMENT: RESIDUES 38-112; COMPND 21 SYNONYM: TF, COAGULATION FACTOR III, THROMBOPLASTIN, CD142 ANTIGEN; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 4; COMPND 24 MOLECULE: TISSUE FACTOR; COMPND 25 CHAIN: U; COMPND 26 FRAGMENT: RESIDUES 91-210; COMPND 27 SYNONYM: TF, COAGULATION FACTOR III, THROMBOPLASTIN, CD142 ANTIGEN; COMPND 28 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BHK; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BHK; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: BHK; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: BHK KEYWDS PROTEIN-COFACTOR COMPLEX, FVIIA AND SOULUBLE TISSUE FACTOR, KEYWDS 2 INHIBITOR, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR K.RAMAN,B.YARLAGADDA REVDAT 7 15-NOV-23 2EC9 1 REMARK REVDAT 6 25-OCT-23 2EC9 1 HETSYN REVDAT 5 29-JUL-20 2EC9 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 05-SEP-12 2EC9 1 JRNL REVDAT 3 13-JUL-11 2EC9 1 VERSN REVDAT 2 24-FEB-09 2EC9 1 VERSN REVDAT 1 19-FEB-08 2EC9 0 JRNL AUTH R.KRISHNAN,P.L.KOTIAN,P.CHAND,S.BANTIA,S.ROWLAND,Y.S.BABU JRNL TITL PROBING THE S2 SITE OF FACTOR VIIA TO GENERATE POTENT AND JRNL TITL 2 SELECTIVE INHIBITORS: THE STRUCTURE OF BCX-3607 IN COMPLEX JRNL TITL 3 WITH TISSUE FACTOR-FACTOR VIIA. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 689 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17505107 JRNL DOI 10.1107/S0907444907014187 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,ACCELRYS REMARK 3 : SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA, REMARK 3 : YIP,DZAKULA) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 42984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4824 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 48596 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4663 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EC9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 98 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47808 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNX REMARK 200 STARTING MODEL: 1DAN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% (W/V)PEG 4K, 0.1M MGCL2, 0.1M ADA REMARK 280 BUFFER, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.89000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.67500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.70500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.67500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.89000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.70500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 10500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, T, U REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS U 159 REMARK 465 SER U 160 REMARK 465 SER U 161 REMARK 465 SER U 162 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG L 113 OE2 GLU H 125 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 15 O - C - N ANGL. DEV. = -11.0 DEGREES REMARK 500 HIS H 199 N - CA - C ANGL. DEV. = -20.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE L 4 118.00 5.90 REMARK 500 LEU L 5 -19.12 101.92 REMARK 500 SER L 12 111.48 -165.00 REMARK 500 ARG L 15 -100.55 -62.18 REMARK 500 CGU L 16 -99.79 63.54 REMARK 500 LYS L 18 -84.27 -73.83 REMARK 500 CGU L 19 -120.01 29.97 REMARK 500 ARG L 28 -92.87 -43.11 REMARK 500 CGU L 29 -3.75 46.50 REMARK 500 ILE L 30 -42.92 -155.74 REMARK 500 LYS L 32 -60.00 76.39 REMARK 500 ALA L 34 -89.19 -66.81 REMARK 500 CGU L 35 -90.85 33.76 REMARK 500 GLN L 49 -7.41 -57.45 REMARK 500 SER L 53 66.49 34.48 REMARK 500 GLN L 100 -94.02 -121.57 REMARK 500 ILE L 140 -5.83 -59.44 REMARK 500 SER H 54 -159.69 -140.82 REMARK 500 ASN H 60D 79.48 -102.05 REMARK 500 HIS H 71 -59.89 -146.82 REMARK 500 THR H 129C -58.97 -121.21 REMARK 500 ASP H 146 -52.98 -27.08 REMARK 500 ASP H 170G 53.28 -110.24 REMARK 500 PHE T 19 -6.11 77.77 REMARK 500 ASP T 66 91.33 -169.37 REMARK 500 ARG U 136 76.96 -118.76 REMARK 500 ASN U 137 73.59 62.27 REMARK 500 ASN U 138 70.20 61.32 REMARK 500 THR U 139 128.32 164.42 REMARK 500 THR U 172 -150.36 -119.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG L 15 CGU L 16 107.40 REMARK 500 LYS L 18 CGU L 19 119.72 REMARK 500 ARG L 28 CGU L 29 86.39 REMARK 500 ALA L 34 CGU L 35 126.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU L 5 -16.46 REMARK 500 LEU L 13 -13.06 REMARK 500 ARG L 15 19.10 REMARK 500 ARG L 28 12.94 REMARK 500 ALA L 34 10.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 FUC L 1060 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA L1007 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU L 14 OE11 REMARK 620 2 CGU L 14 OE12 46.4 REMARK 620 3 CGU L 14 OE22 60.1 78.1 REMARK 620 4 CGU L 19 OE21 89.0 54.5 67.4 REMARK 620 5 CGU L 19 OE11 151.2 127.4 91.7 73.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA L1005 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU L 16 OE11 REMARK 620 2 CGU L 16 OE22 89.8 REMARK 620 3 CGU L 26 OE11 142.3 60.5 REMARK 620 4 CGU L 26 OE21 86.0 72.7 64.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA L1009 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU L 29 OE11 REMARK 620 2 HOH L1077 O 114.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA L1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP L 46 OD2 REMARK 620 2 GLY L 47 O 114.2 REMARK 620 3 GLN L 49 OE1 89.1 75.6 REMARK 620 4 ASP L 63 OD2 161.6 83.9 92.2 REMARK 620 5 GLN L 64 O 77.3 142.4 68.6 86.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA H1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU H 70 OE1 REMARK 620 2 GLU H 70 OE2 46.2 REMARK 620 3 GLU H 75 O 91.8 138.0 REMARK 620 4 HIS H 76 ND1 143.1 122.5 90.6 REMARK 620 5 GLU H 80 OE2 66.3 93.4 64.2 81.9 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DAN RELATED DB: PDB DBREF 2EC9 L 1 142 UNP P08709 FA7_HUMAN 61 202 DBREF 2EC9 H 16 257 UNP P08709 FA7_HUMAN 213 466 DBREF 2EC9 T 6 80 UNP P13726 TF_HUMAN 38 112 DBREF 2EC9 U 91 210 UNP P13726 TF_HUMAN 123 242 SEQRES 1 L 142 ALA ASN ALA PHE LEU CGU CGU LEU ARG PRO GLY SER LEU SEQRES 2 L 142 CGU ARG CGU CYS LYS CGU CGU GLN CYS SER PHE CGU CGU SEQRES 3 L 142 ALA ARG CGU ILE PHE LYS ASP ALA CGU ARG THR LYS LEU SEQRES 4 L 142 PHE TRP ILE SER TYR SER ASP GLY ASP GLN CYS ALA SER SEQRES 5 L 142 SER PRO CYS GLN ASN GLY GLY SER CYS LYS ASP GLN LEU SEQRES 6 L 142 GLN SER TYR ILE CYS PHE CYS LEU PRO ALA PHE GLU GLY SEQRES 7 L 142 ARG ASN CYS GLU THR HIS LYS ASP ASP GLN LEU ILE CYS SEQRES 8 L 142 VAL ASN GLU ASN GLY GLY CYS GLU GLN TYR CYS SER ASP SEQRES 9 L 142 HIS THR GLY THR LYS ARG SER CYS ARG CYS HIS GLU GLY SEQRES 10 L 142 TYR SER LEU LEU ALA ASP GLY VAL SER CYS THR PRO THR SEQRES 11 L 142 VAL GLU TYR PRO CYS GLY LYS ILE PRO ILE LEU GLU SEQRES 1 H 254 ILE VAL GLY GLY LYS VAL CYS PRO LYS GLY GLU CYS PRO SEQRES 2 H 254 TRP GLN VAL LEU LEU LEU VAL ASN GLY ALA GLN LEU CYS SEQRES 3 H 254 GLY GLY THR LEU ILE ASN THR ILE TRP VAL VAL SER ALA SEQRES 4 H 254 ALA HIS CYS PHE ASP LYS ILE LYS ASN TRP ARG ASN LEU SEQRES 5 H 254 ILE ALA VAL LEU GLY GLU HIS ASP LEU SER GLU HIS ASP SEQRES 6 H 254 GLY ASP GLU GLN SER ARG ARG VAL ALA GLN VAL ILE ILE SEQRES 7 H 254 PRO SER THR TYR VAL PRO GLY THR THR ASN HIS ASP ILE SEQRES 8 H 254 ALA LEU LEU ARG LEU HIS GLN PRO VAL VAL LEU THR ASP SEQRES 9 H 254 HIS VAL VAL PRO LEU CYS LEU PRO GLU ARG THR PHE SER SEQRES 10 H 254 GLU ARG THR LEU ALA PHE VAL ARG PHE SER LEU VAL SER SEQRES 11 H 254 GLY TRP GLY GLN LEU LEU ASP ARG GLY ALA THR ALA LEU SEQRES 12 H 254 GLU LEU MET VAL LEU ASN VAL PRO ARG LEU MET THR GLN SEQRES 13 H 254 ASP CYS LEU GLN GLN SER ARG LYS VAL GLY ASP SER PRO SEQRES 14 H 254 ASN ILE THR GLU TYR MET PHE CYS ALA GLY TYR SER ASP SEQRES 15 H 254 GLY SER LYS ASP SER CYS LYS GLY ASP SER GLY GLY PRO SEQRES 16 H 254 HIS ALA THR HIS TYR ARG GLY THR TRP TYR LEU THR GLY SEQRES 17 H 254 ILE VAL SER TRP GLY GLN GLY CYS ALA THR VAL GLY HIS SEQRES 18 H 254 PHE GLY VAL TYR THR ARG VAL SER GLN TYR ILE GLU TRP SEQRES 19 H 254 LEU GLN LYS LEU MET ARG SER GLU PRO ARG PRO GLY VAL SEQRES 20 H 254 LEU LEU ARG ALA PRO PHE PRO SEQRES 1 T 75 THR VAL ALA ALA TYR ASN LEU THR TRP LYS SER THR ASN SEQRES 2 T 75 PHE LYS THR ILE LEU GLU TRP GLU PRO LYS PRO VAL ASN SEQRES 3 T 75 GLN VAL TYR THR VAL GLN ILE SER THR LYS SER GLY ASP SEQRES 4 T 75 TRP LYS SER LYS CYS PHE TYR THR THR ASP THR GLU CYS SEQRES 5 T 75 ASP LEU THR ASP GLU ILE VAL LYS ASP VAL LYS GLN THR SEQRES 6 T 75 TYR LEU ALA ARG VAL PHE SER TYR PRO ALA SEQRES 1 U 120 GLU PRO LEU TYR GLU ASN SER PRO GLU PHE THR PRO TYR SEQRES 2 U 120 LEU GLU THR ASN LEU GLY GLN PRO THR ILE GLN SER PHE SEQRES 3 U 120 GLU GLN VAL GLY THR LYS VAL ASN VAL THR VAL GLU ASP SEQRES 4 U 120 GLU ARG THR LEU VAL ARG ARG ASN ASN THR PHE LEU SER SEQRES 5 U 120 LEU ARG ASP VAL PHE GLY LYS ASP LEU ILE TYR THR LEU SEQRES 6 U 120 TYR TYR TRP LYS SER SER SER SER GLY LYS LYS THR ALA SEQRES 7 U 120 LYS THR ASN THR ASN GLU PHE LEU ILE ASP VAL ASP LYS SEQRES 8 U 120 GLY GLU ASN TYR CYS PHE SER VAL GLN ALA VAL ILE PRO SEQRES 9 U 120 SER ARG THR VAL ASN ARG LYS SER THR ASP SER PRO VAL SEQRES 10 U 120 GLU CYS MET MODRES 2EC9 CGU L 6 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 2EC9 CGU L 7 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 2EC9 CGU L 14 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 2EC9 CGU L 16 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 2EC9 CGU L 19 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 2EC9 CGU L 20 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 2EC9 CGU L 25 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 2EC9 CGU L 26 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 2EC9 CGU L 29 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 2EC9 CGU L 35 GLU GAMMA-CARBOXY-GLUTAMIC ACID HET CGU L 6 12 HET CGU L 7 12 HET CGU L 14 12 HET CGU L 16 12 HET CGU L 19 12 HET CGU L 20 12 HET CGU L 25 12 HET CGU L 26 12 HET CGU L 29 12 HET CGU L 35 12 HET ASO L1052 11 HET FUC L1060 10 HET CA L1002 1 HET CA L1003 1 HET CA L1004 1 HET CA L1005 1 HET CA L1006 1 HET CA L1007 1 HET CA L1008 1 HET CA L1009 1 HET CA H1001 1 HET 24X H 999 35 HETNAM CGU GAMMA-CARBOXY-GLUTAMIC ACID HETNAM ASO 1,5-ANHYDRO-D-GLUCITOL HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM 24X 2'-((5-CARBAMIMIDOYLPYRIDIN-2-YLAMINO)METHYL)-4- HETNAM 2 24X (ISOBUTYLCARBAMOYL)-4'-VINYLBIPHENYL-2-CARBOXYLIC ACID HETSYN ASO 1,5-ANHYDROSORBITOL HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 1 CGU 10(C6 H9 N O6) FORMUL 5 ASO C6 H12 O5 FORMUL 6 FUC C6 H12 O5 FORMUL 7 CA 9(CA 2+) FORMUL 16 24X C27 H29 N5 O3 FORMUL 17 HOH *224(H2 O) HELIX 1 1 SER L 12 CYS L 17 1 6 HELIX 2 2 SER L 23 LYS L 32 1 10 HELIX 3 3 ASP L 33 SER L 45 1 13 HELIX 4 4 ASP L 86 GLN L 88 5 3 HELIX 5 5 ASN L 93 CYS L 98 5 6 HELIX 6 6 ALA H 55 ASP H 60 5 6 HELIX 7 7 GLU H 125 THR H 129C 1 8 HELIX 8 8 LEU H 129D VAL H 129G 5 4 HELIX 9 9 MET H 164 SER H 170B 1 9 HELIX 10 10 TYR H 234 ARG H 243 1 10 HELIX 11 11 LEU T 59 VAL T 64 1 6 HELIX 12 12 THR U 101 THR U 106 1 6 HELIX 13 13 LEU U 143 GLY U 148 1 6 HELIX 14 14 LYS U 149 LEU U 151 5 3 SHEET 1 A 2 SER L 60 GLN L 64 0 SHEET 2 A 2 SER L 67 PHE L 71 -1 O PHE L 71 N SER L 60 SHEET 1 B 2 PHE L 76 GLU L 77 0 SHEET 2 B 2 THR L 83 HIS L 84 -1 O THR L 83 N GLU L 77 SHEET 1 C 2 TYR L 101 SER L 103 0 SHEET 2 C 2 SER L 111 ARG L 113 -1 O SER L 111 N SER L 103 SHEET 1 D 2 TYR L 118 LEU L 120 0 SHEET 2 D 2 CYS L 127 PRO L 129 -1 O THR L 128 N SER L 119 SHEET 1 E 8 LYS H 20 VAL H 21 0 SHEET 2 E 8 MET H 156 LEU H 163 -1 O VAL H 157 N LYS H 20 SHEET 3 E 8 MET H 180 ALA H 183 -1 O CYS H 182 N LEU H 163 SHEET 4 E 8 GLY H 226 ARG H 230 -1 O TYR H 228 N PHE H 181 SHEET 5 E 8 THR H 206 TRP H 215 -1 N TRP H 215 O VAL H 227 SHEET 6 E 8 PRO H 198 TYR H 203 -1 N THR H 201 O TYR H 208 SHEET 7 E 8 PHE H 135 GLY H 140 -1 N LEU H 137 O ALA H 200 SHEET 8 E 8 MET H 156 LEU H 163 -1 O VAL H 160 N SER H 136 SHEET 1 F 8 LEU H 251 ALA H 254 0 SHEET 2 F 8 GLN H 81 PRO H 91 1 N VAL H 88 O LEU H 252 SHEET 3 F 8 ALA H 104 LEU H 108 -1 O LEU H 105 N ILE H 89 SHEET 4 F 8 TRP H 51 SER H 54 -1 N VAL H 52 O LEU H 106 SHEET 5 F 8 ALA H 39 LEU H 46 -1 N THR H 45 O VAL H 53 SHEET 6 F 8 GLN H 30 VAL H 35 -1 N LEU H 33 O LEU H 41 SHEET 7 F 8 LEU H 64 LEU H 68 -1 O ILE H 65 N LEU H 34 SHEET 8 F 8 GLN H 81 PRO H 91 -1 O GLN H 81 N LEU H 68 SHEET 1 G 3 TYR T 10 THR T 17 0 SHEET 2 G 3 LYS T 20 GLU T 26 -1 O ILE T 22 N LYS T 15 SHEET 3 G 3 GLU T 56 ASP T 58 -1 O CYS T 57 N LEU T 23 SHEET 1 H 4 LYS T 46 THR T 52 0 SHEET 2 H 4 GLN T 32 THR T 40 -1 N VAL T 36 O LYS T 48 SHEET 3 H 4 TYR T 71 PRO T 79 -1 O TYR T 78 N VAL T 33 SHEET 4 H 4 LEU U 93 ASN U 96 -1 O LEU U 93 N SER T 77 SHEET 1 I 3 ILE U 113 VAL U 119 0 SHEET 2 I 3 LYS U 122 VAL U 127 -1 O LYS U 122 N VAL U 119 SHEET 3 I 3 GLU U 174 ASP U 178 -1 O PHE U 175 N VAL U 125 SHEET 1 J 2 ARG U 131 ARG U 135 0 SHEET 2 J 2 PHE U 140 SER U 142 -1 O LEU U 141 N THR U 132 SHEET 1 K 4 LYS U 166 THR U 170 0 SHEET 2 K 4 ILE U 152 TRP U 158 -1 N LEU U 155 O ALA U 168 SHEET 3 K 4 CYS U 186 VAL U 192 -1 O SER U 188 N TYR U 156 SHEET 4 K 4 GLU U 208 CYS U 209 -1 O GLU U 208 N PHE U 187 SSBOND 1 CYS L 17 CYS L 22 1555 1555 2.03 SSBOND 2 CYS L 50 CYS L 61 1555 1555 2.03 SSBOND 3 CYS L 55 CYS L 70 1555 1555 2.03 SSBOND 4 CYS L 72 CYS L 81 1555 1555 2.03 SSBOND 5 CYS L 91 CYS L 102 1555 1555 2.03 SSBOND 6 CYS L 98 CYS L 112 1555 1555 2.04 SSBOND 7 CYS L 114 CYS L 127 1555 1555 2.03 SSBOND 8 CYS L 135 CYS H 122 1555 1555 2.03 SSBOND 9 CYS H 22 CYS H 27 1555 1555 2.04 SSBOND 10 CYS H 42 CYS H 58 1555 1555 2.03 SSBOND 11 CYS H 168 CYS H 182 1555 1555 2.02 SSBOND 12 CYS H 191 CYS H 220 1555 1555 2.03 SSBOND 13 CYS T 49 CYS T 57 1555 1555 2.03 SSBOND 14 CYS U 186 CYS U 209 1555 1555 2.03 LINK C LEU L 5 N CGU L 6 1555 1555 1.38 LINK C CGU L 6 N CGU L 7 1555 1555 1.37 LINK C CGU L 7 N LEU L 8 1555 1555 1.40 LINK C LEU L 13 N CGU L 14 1555 1555 1.39 LINK C CGU L 14 N ARG L 15 1555 1555 1.38 LINK C ARG L 15 N CGU L 16 1555 1555 1.39 LINK C CGU L 16 N CYS L 17 1555 1555 1.37 LINK C LYS L 18 N CGU L 19 1555 1555 1.40 LINK C CGU L 19 N CGU L 20 1555 1555 1.36 LINK C CGU L 20 N GLN L 21 1555 1555 1.39 LINK C PHE L 24 N CGU L 25 1555 1555 1.41 LINK C CGU L 25 N CGU L 26 1555 1555 1.35 LINK C CGU L 26 N ALA L 27 1555 1555 1.38 LINK C ARG L 28 N CGU L 29 1555 1555 1.41 LINK C CGU L 29 N ILE L 30 1555 1555 1.41 LINK C ALA L 34 N CGU L 35 1555 1555 1.39 LINK C CGU L 35 N ARG L 36 1555 1555 1.39 LINK O ARG L 9 CA CA L1004 1555 1555 2.87 LINK OE11 CGU L 14 CA CA L1007 1555 1555 2.94 LINK OE12 CGU L 14 CA CA L1007 1555 1555 2.73 LINK OE22 CGU L 14 CA CA L1007 1555 1555 2.84 LINK OE11 CGU L 16 CA CA L1005 1555 1555 2.59 LINK OE22 CGU L 16 CA CA L1005 1555 1555 2.68 LINK OE21 CGU L 19 CA CA L1007 1555 1555 2.98 LINK OE11 CGU L 19 CA CA L1007 1555 1555 3.20 LINK OE22 CGU L 19 CA CA L1008 1555 1555 2.71 LINK OE11 CGU L 26 CA CA L1005 1555 1555 2.68 LINK OE21 CGU L 26 CA CA L1005 1555 1555 2.75 LINK OE11 CGU L 29 CA CA L1009 1555 1555 3.15 LINK OD2 ASP L 46 CA CA L1002 1555 1555 2.42 LINK O GLY L 47 CA CA L1002 1555 1555 2.37 LINK OE1 GLN L 49 CA CA L1002 1555 1555 2.87 LINK OD2 ASP L 63 CA CA L1002 1555 1555 2.49 LINK O GLN L 64 CA CA L1002 1555 1555 2.65 LINK CA CA L1009 O HOH L1077 1555 1555 2.82 LINK OE1 GLU H 70 CA CA H1001 1555 1555 2.95 LINK OE2 GLU H 70 CA CA H1001 1555 1555 2.60 LINK O GLU H 75 CA CA H1001 1555 1555 2.90 LINK ND1 HIS H 76 CA CA H1001 1555 1555 2.99 LINK OE2 GLU H 80 CA CA H1001 1555 1555 3.00 CISPEP 1 PHE H 256 PRO H 257 0 0.03 CISPEP 2 GLU T 26 PRO T 27 0 0.04 CRYST1 69.780 81.410 125.350 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014331 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007978 0.00000