data_2EDB # _entry.id 2EDB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2EDB pdb_00002edb 10.2210/pdb2edb/pdb RCSB RCSB026523 ? ? WWPDB D_1000026523 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002001052.4 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2EDB _pdbx_database_status.recvd_initial_deposition_date 2007-02-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tochio, N.' 1 'Koshiba, S.' 2 'Kigawa, T.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Solution structure of the fourth fibronectin type III domain of human Netrin receptor DCC' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tochio, N.' 1 ? primary 'Koshiba, S.' 2 ? primary 'Kigawa, T.' 3 ? primary 'Yokoyama, S.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Netrin receptor DCC' _entity.formula_weight 12474.644 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'fourth fn3 domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Tumor suppressor protein DCC, Colorectal cancer suppressor' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGPENDLDESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAETVRVDSKQRYYSIERLES SSHYVISLKAFNNAGEGVPLYESATTRSITSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGPENDLDESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAETVRVDSKQRYYSIERLES SSHYVISLKAFNNAGEGVPLYESATTRSITSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002001052.4 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 GLU n 1 10 ASN n 1 11 ASP n 1 12 LEU n 1 13 ASP n 1 14 GLU n 1 15 SER n 1 16 GLN n 1 17 VAL n 1 18 PRO n 1 19 ASP n 1 20 GLN n 1 21 PRO n 1 22 SER n 1 23 SER n 1 24 LEU n 1 25 HIS n 1 26 VAL n 1 27 ARG n 1 28 PRO n 1 29 GLN n 1 30 THR n 1 31 ASN n 1 32 CYS n 1 33 ILE n 1 34 ILE n 1 35 MET n 1 36 SER n 1 37 TRP n 1 38 THR n 1 39 PRO n 1 40 PRO n 1 41 LEU n 1 42 ASN n 1 43 PRO n 1 44 ASN n 1 45 ILE n 1 46 VAL n 1 47 VAL n 1 48 ARG n 1 49 GLY n 1 50 TYR n 1 51 ILE n 1 52 ILE n 1 53 GLY n 1 54 TYR n 1 55 GLY n 1 56 VAL n 1 57 GLY n 1 58 SER n 1 59 PRO n 1 60 TYR n 1 61 ALA n 1 62 GLU n 1 63 THR n 1 64 VAL n 1 65 ARG n 1 66 VAL n 1 67 ASP n 1 68 SER n 1 69 LYS n 1 70 GLN n 1 71 ARG n 1 72 TYR n 1 73 TYR n 1 74 SER n 1 75 ILE n 1 76 GLU n 1 77 ARG n 1 78 LEU n 1 79 GLU n 1 80 SER n 1 81 SER n 1 82 SER n 1 83 HIS n 1 84 TYR n 1 85 VAL n 1 86 ILE n 1 87 SER n 1 88 LEU n 1 89 LYS n 1 90 ALA n 1 91 PHE n 1 92 ASN n 1 93 ASN n 1 94 ALA n 1 95 GLY n 1 96 GLU n 1 97 GLY n 1 98 VAL n 1 99 PRO n 1 100 LEU n 1 101 TYR n 1 102 GLU n 1 103 SER n 1 104 ALA n 1 105 THR n 1 106 THR n 1 107 ARG n 1 108 SER n 1 109 ILE n 1 110 THR n 1 111 SER n 1 112 GLY n 1 113 PRO n 1 114 SER n 1 115 SER n 1 116 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene DCC _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050905-22 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCC_HUMAN _struct_ref.pdbx_db_accession P43146 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PENDLDESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAETVRVDSKQRYYSIERLESSSHYVIS LKAFNNAGEGVPLYESATTRSIT ; _struct_ref.pdbx_align_begin 716 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2EDB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 110 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P43146 _struct_ref_seq.db_align_beg 716 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 818 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 110 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2EDB GLY A 1 ? UNP P43146 ? ? 'expression tag' 1 1 1 2EDB SER A 2 ? UNP P43146 ? ? 'expression tag' 2 2 1 2EDB SER A 3 ? UNP P43146 ? ? 'expression tag' 3 3 1 2EDB GLY A 4 ? UNP P43146 ? ? 'expression tag' 4 4 1 2EDB SER A 5 ? UNP P43146 ? ? 'expression tag' 5 5 1 2EDB SER A 6 ? UNP P43146 ? ? 'expression tag' 6 6 1 2EDB GLY A 7 ? UNP P43146 ? ? 'expression tag' 7 7 1 2EDB SER A 111 ? UNP P43146 ? ? 'expression tag' 111 8 1 2EDB GLY A 112 ? UNP P43146 ? ? 'expression tag' 112 9 1 2EDB PRO A 113 ? UNP P43146 ? ? 'expression tag' 113 10 1 2EDB SER A 114 ? UNP P43146 ? ? 'expression tag' 114 11 1 2EDB SER A 115 ? UNP P43146 ? ? 'expression tag' 115 12 1 2EDB GLY A 116 ? UNP P43146 ? ? 'expression tag' 116 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;1.2mM sample U-15N,13C; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 900 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2EDB _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2EDB _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations,target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2EDB _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMNMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.955 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2EDB _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2EDB _struct.title 'Solution structure of the fourth fibronectin type III domain of human Netrin receptor DCC' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2EDB _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text ;Tumor suppressor protein DCC, Colorectal cancer suppressor, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, APOPTOSIS ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 24 ? PRO A 28 ? LEU A 24 PRO A 28 A 2 ILE A 33 ? TRP A 37 ? ILE A 33 TRP A 37 A 3 TYR A 72 ? ILE A 75 ? TYR A 72 ILE A 75 B 1 GLU A 62 ? ASP A 67 ? GLU A 62 ASP A 67 B 2 GLY A 49 ? VAL A 56 ? GLY A 49 VAL A 56 B 3 TYR A 84 ? ASN A 92 ? TYR A 84 ASN A 92 B 4 GLY A 95 ? GLU A 96 ? GLY A 95 GLU A 96 C 1 GLU A 62 ? ASP A 67 ? GLU A 62 ASP A 67 C 2 GLY A 49 ? VAL A 56 ? GLY A 49 VAL A 56 C 3 TYR A 84 ? ASN A 92 ? TYR A 84 ASN A 92 C 4 LEU A 100 ? GLU A 102 ? LEU A 100 GLU A 102 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 27 ? N ARG A 27 O ILE A 34 ? O ILE A 34 A 2 3 N ILE A 33 ? N ILE A 33 O ILE A 75 ? O ILE A 75 B 1 2 O VAL A 64 ? O VAL A 64 N ILE A 52 ? N ILE A 52 B 2 3 N ILE A 51 ? N ILE A 51 O LYS A 89 ? O LYS A 89 B 3 4 N ASN A 92 ? N ASN A 92 O GLY A 95 ? O GLY A 95 C 1 2 O VAL A 64 ? O VAL A 64 N ILE A 52 ? N ILE A 52 C 2 3 N ILE A 51 ? N ILE A 51 O LYS A 89 ? O LYS A 89 C 3 4 N LEU A 88 ? N LEU A 88 O LEU A 100 ? O LEU A 100 # _database_PDB_matrix.entry_id 2EDB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2EDB _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 HIS 25 25 25 HIS HIS A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 CYS 32 32 32 CYS CYS A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 MET 35 35 35 MET MET A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 TRP 37 37 37 TRP TRP A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 HIS 83 83 83 HIS HIS A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 PHE 91 91 91 PHE PHE A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 TYR 101 101 101 TYR TYR A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 ARG 107 107 107 ARG ARG A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 GLY 116 116 116 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 9 ? ? -58.01 107.40 2 1 ASN A 10 ? ? -102.05 -65.14 3 1 SER A 22 ? ? -31.60 -37.07 4 1 THR A 30 ? ? -53.67 -70.75 5 1 PRO A 59 ? ? -69.82 14.44 6 1 VAL A 98 ? ? -32.81 102.98 7 1 ALA A 104 ? ? -163.91 107.85 8 1 THR A 106 ? ? -45.21 171.32 9 1 SER A 111 ? ? -46.88 151.17 10 2 SER A 2 ? ? -101.67 42.11 11 2 SER A 3 ? ? -81.26 42.15 12 2 PRO A 8 ? ? -69.73 -173.53 13 2 GLU A 9 ? ? -68.92 87.68 14 2 ASP A 19 ? ? -49.71 173.76 15 2 SER A 22 ? ? -32.92 -34.68 16 2 THR A 30 ? ? -47.60 -71.04 17 2 LEU A 41 ? ? -47.57 -19.92 18 2 PRO A 59 ? ? -69.74 14.61 19 2 VAL A 98 ? ? -33.90 103.37 20 2 ALA A 104 ? ? -164.36 114.71 21 2 THR A 106 ? ? -44.20 168.05 22 2 SER A 114 ? ? -68.97 71.89 23 3 SER A 2 ? ? -160.89 119.09 24 3 SER A 6 ? ? -92.44 40.21 25 3 PRO A 8 ? ? -69.78 -171.92 26 3 ASP A 11 ? ? 73.34 46.51 27 3 SER A 22 ? ? -31.53 -38.58 28 3 PRO A 59 ? ? -69.83 13.49 29 3 VAL A 98 ? ? -34.21 103.38 30 3 ALA A 104 ? ? -163.53 112.39 31 3 THR A 106 ? ? -45.77 172.47 32 4 SER A 5 ? ? -83.18 41.71 33 4 PRO A 8 ? ? -69.80 -168.44 34 4 ASP A 11 ? ? 74.95 38.60 35 4 SER A 22 ? ? -34.17 -38.00 36 4 PRO A 28 ? ? -69.77 92.85 37 4 PRO A 59 ? ? -69.74 15.63 38 4 SER A 81 ? ? 73.98 52.29 39 4 VAL A 98 ? ? -35.51 102.79 40 4 SER A 115 ? ? -34.72 131.88 41 5 GLU A 9 ? ? -54.79 84.52 42 5 ASN A 10 ? ? -127.52 -58.67 43 5 SER A 22 ? ? -31.81 -36.49 44 5 THR A 30 ? ? -48.64 -70.71 45 5 PRO A 59 ? ? -69.82 15.80 46 5 VAL A 98 ? ? -35.13 101.92 47 5 THR A 106 ? ? -43.34 158.83 48 6 SER A 5 ? ? -81.60 42.23 49 6 PRO A 8 ? ? -69.77 -165.28 50 6 ASP A 19 ? ? -56.19 172.93 51 6 SER A 22 ? ? -38.29 -33.55 52 6 PRO A 59 ? ? -69.76 14.86 53 6 VAL A 98 ? ? -33.67 104.69 54 6 THR A 106 ? ? -43.57 168.48 55 7 SER A 2 ? ? -87.11 42.45 56 7 SER A 6 ? ? -53.35 171.81 57 7 PRO A 8 ? ? -69.77 2.16 58 7 GLU A 9 ? ? -42.65 92.10 59 7 SER A 22 ? ? -30.79 -38.56 60 7 THR A 30 ? ? -45.38 -70.93 61 7 PRO A 59 ? ? -69.78 13.93 62 7 VAL A 98 ? ? -33.52 103.38 63 7 ALA A 104 ? ? -160.21 105.18 64 7 THR A 106 ? ? -41.52 157.82 65 8 SER A 2 ? ? -123.68 -56.13 66 8 SER A 6 ? ? -45.77 158.51 67 8 PRO A 8 ? ? -69.77 -177.57 68 8 ASN A 10 ? ? -124.82 -68.13 69 8 ASP A 19 ? ? -51.85 175.58 70 8 PRO A 59 ? ? -69.77 13.49 71 8 SER A 68 ? ? -79.67 22.62 72 8 ASN A 92 ? ? -171.08 -175.06 73 8 VAL A 98 ? ? -35.96 104.16 74 8 THR A 106 ? ? -45.26 167.88 75 9 SER A 5 ? ? -106.95 45.53 76 9 PRO A 8 ? ? -69.77 0.28 77 9 GLU A 9 ? ? -41.39 91.44 78 9 SER A 15 ? ? -39.94 -25.34 79 9 SER A 22 ? ? -31.99 -39.38 80 9 PRO A 59 ? ? -69.76 13.35 81 9 SER A 68 ? ? -68.88 1.04 82 9 VAL A 98 ? ? -33.80 103.71 83 9 ALA A 104 ? ? -161.96 108.58 84 9 THR A 106 ? ? -47.49 167.54 85 10 PRO A 8 ? ? -69.81 -174.84 86 10 SER A 22 ? ? -32.67 -35.46 87 10 THR A 30 ? ? -58.14 -70.87 88 10 PRO A 43 ? ? -69.72 0.34 89 10 PRO A 59 ? ? -69.77 15.17 90 10 SER A 81 ? ? 73.33 48.00 91 10 ASN A 92 ? ? -170.31 -175.01 92 10 VAL A 98 ? ? -34.55 103.17 93 10 ALA A 104 ? ? -166.43 112.35 94 10 THR A 106 ? ? -45.61 171.52 95 10 PRO A 113 ? ? -69.77 2.09 96 11 SER A 5 ? ? -101.20 41.52 97 11 PRO A 8 ? ? -69.72 3.39 98 11 SER A 22 ? ? -32.05 -36.54 99 11 PRO A 59 ? ? -69.72 12.70 100 11 SER A 81 ? ? 73.62 52.35 101 11 VAL A 98 ? ? -33.12 105.83 102 11 ALA A 104 ? ? -166.10 112.20 103 11 THR A 106 ? ? -44.89 170.61 104 11 ILE A 109 ? ? -37.42 134.52 105 11 PRO A 113 ? ? -69.74 85.52 106 12 PRO A 8 ? ? -69.76 0.96 107 12 SER A 15 ? ? -39.60 -24.76 108 12 SER A 22 ? ? -33.05 -34.93 109 12 PRO A 59 ? ? -69.71 17.51 110 12 SER A 68 ? ? -78.43 20.46 111 12 SER A 81 ? ? 74.96 54.91 112 12 VAL A 98 ? ? -34.25 102.89 113 12 THR A 106 ? ? -46.18 173.02 114 13 PRO A 8 ? ? -69.76 -175.94 115 13 SER A 22 ? ? -32.95 -33.92 116 13 LEU A 41 ? ? -47.13 -19.04 117 13 PRO A 59 ? ? -69.82 15.74 118 13 VAL A 98 ? ? -37.23 104.34 119 13 THR A 106 ? ? -45.47 170.93 120 13 SER A 111 ? ? -39.65 120.85 121 14 PRO A 8 ? ? -69.79 1.28 122 14 SER A 22 ? ? -34.14 -33.03 123 14 PRO A 28 ? ? -69.83 95.41 124 14 THR A 30 ? ? -57.41 -70.52 125 14 PRO A 59 ? ? -69.73 11.65 126 14 SER A 81 ? ? 74.62 55.00 127 14 VAL A 98 ? ? -34.16 102.87 128 14 THR A 106 ? ? -49.08 166.30 129 14 ILE A 109 ? ? -37.52 114.78 130 14 SER A 111 ? ? 35.56 44.96 131 15 ASN A 10 ? ? -101.55 -60.23 132 15 ASP A 19 ? ? -56.25 171.77 133 15 SER A 22 ? ? -36.90 -28.77 134 15 THR A 30 ? ? -53.92 -71.35 135 15 PRO A 59 ? ? -69.82 16.07 136 15 SER A 68 ? ? -82.04 30.46 137 15 VAL A 98 ? ? -35.69 104.80 138 15 ALA A 104 ? ? -163.62 113.19 139 15 THR A 106 ? ? -44.32 169.75 140 16 PRO A 8 ? ? -69.75 -166.41 141 16 SER A 22 ? ? -33.49 -34.09 142 16 PRO A 59 ? ? -69.77 16.98 143 16 SER A 68 ? ? -78.70 20.11 144 16 VAL A 98 ? ? -35.31 102.69 145 16 THR A 106 ? ? -44.08 165.68 146 16 THR A 110 ? ? -63.29 73.32 147 16 SER A 115 ? ? -172.01 113.51 148 17 SER A 2 ? ? -121.33 -53.88 149 17 SER A 6 ? ? 36.59 40.27 150 17 PRO A 8 ? ? -69.78 -168.46 151 17 ASN A 10 ? ? -60.33 80.39 152 17 SER A 15 ? ? -49.65 -18.69 153 17 SER A 22 ? ? -30.32 -38.62 154 17 LEU A 41 ? ? -47.05 -18.42 155 17 PRO A 59 ? ? -69.73 14.49 156 17 VAL A 98 ? ? -32.17 106.29 157 17 ALA A 104 ? ? -163.38 106.11 158 17 THR A 106 ? ? -42.34 162.21 159 18 SER A 6 ? ? 38.35 37.62 160 18 ASN A 10 ? ? -168.80 106.97 161 18 PRO A 28 ? ? -69.79 92.77 162 18 THR A 30 ? ? -58.83 -70.78 163 18 PRO A 59 ? ? -69.73 16.34 164 18 SER A 81 ? ? 72.72 48.86 165 18 VAL A 98 ? ? -31.54 103.43 166 18 THR A 106 ? ? -42.44 154.93 167 19 SER A 22 ? ? -29.74 -40.78 168 19 PRO A 59 ? ? -69.79 13.05 169 19 VAL A 98 ? ? -32.81 106.07 170 19 ALA A 104 ? ? -163.07 111.40 171 19 THR A 106 ? ? -45.24 172.15 172 19 SER A 114 ? ? -39.06 126.78 173 20 SER A 3 ? ? 70.81 40.83 174 20 ASN A 10 ? ? -164.03 109.82 175 20 ASP A 11 ? ? 72.08 38.11 176 20 ASP A 19 ? ? -48.14 177.32 177 20 SER A 22 ? ? -34.02 -34.27 178 20 PRO A 59 ? ? -69.76 14.26 179 20 SER A 68 ? ? -67.53 0.72 180 20 ALA A 104 ? ? -162.73 106.01 181 20 THR A 106 ? ? -45.41 171.62 182 20 THR A 110 ? ? -37.86 139.93 183 20 SER A 115 ? ? -34.80 142.52 #