HEADER CELL ADHESION 14-FEB-07 2EDJ TITLE SOLUTION STRUCTURE OF THE FIFTH IG-LIKE DOMAIN FROM HUMAN ROUNDABOUT TITLE 2 HOMOLOG 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROUNDABOUT HOMOLOG 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: I-SET DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P060327-11; SOURCE 7 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS KIAA1568 PROTEIN, BETA SANDWICH, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.KUROSAKI,K.IZUMI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EDJ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EDJ 1 VERSN REVDAT 1 14-AUG-07 2EDJ 0 JRNL AUTH C.KUROSAKI,K.IZUMI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIFTH IG-LIKE DOMAIN FROM HUMAN JRNL TITL 2 ROUNDABOUT HOMOLOG 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DELTA NMR 4.3.2, CYANA 2.0.17 REMARK 3 AUTHORS : JEOL (DELTA NMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EDJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026530. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.13MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3, 90% REMARK 210 H2O; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : ECA REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9817, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 22 151.63 -41.79 REMARK 500 1 ASP A 23 30.88 71.27 REMARK 500 1 PRO A 36 -177.64 -69.69 REMARK 500 1 GLN A 61 45.40 -96.19 REMARK 500 1 LEU A 69 171.32 -45.72 REMARK 500 1 THR A 74 116.12 -38.77 REMARK 500 1 SER A 84 -33.64 -37.41 REMARK 500 1 SER A 85 -73.02 -69.10 REMARK 500 2 PRO A 36 -178.39 -69.85 REMARK 500 2 ARG A 52 67.92 -115.79 REMARK 500 2 GLN A 59 -176.56 -66.50 REMARK 500 2 GLN A 61 39.68 -90.54 REMARK 500 2 LEU A 69 161.16 -49.42 REMARK 500 2 GLU A 87 148.56 -170.41 REMARK 500 3 SER A 3 69.06 -113.92 REMARK 500 3 SER A 5 46.92 36.11 REMARK 500 3 PRO A 15 -179.17 -69.76 REMARK 500 3 ILE A 40 142.44 -37.43 REMARK 500 3 PHE A 49 140.29 -170.09 REMARK 500 3 GLN A 59 -177.14 -63.09 REMARK 500 3 GLN A 61 42.35 -92.72 REMARK 500 3 THR A 74 102.53 -44.16 REMARK 500 3 SER A 84 -34.28 -38.90 REMARK 500 3 SER A 85 -70.17 -70.00 REMARK 500 3 GLU A 87 140.11 -174.64 REMARK 500 4 PRO A 15 -166.80 -69.76 REMARK 500 4 ALA A 16 147.99 -171.65 REMARK 500 4 PHE A 49 139.75 -171.73 REMARK 500 4 GLN A 59 -175.17 -69.24 REMARK 500 4 GLN A 61 49.40 -95.76 REMARK 500 4 THR A 74 96.36 -61.14 REMARK 500 4 SER A 83 145.92 -170.03 REMARK 500 4 ALA A 92 149.58 -173.47 REMARK 500 5 SER A 6 155.07 -38.19 REMARK 500 5 PRO A 15 -165.76 -69.78 REMARK 500 5 VAL A 22 150.23 -48.55 REMARK 500 5 THR A 25 114.71 -163.72 REMARK 500 5 ILE A 40 107.55 -48.47 REMARK 500 5 ARG A 52 42.35 36.90 REMARK 500 5 GLU A 60 -34.31 -37.42 REMARK 500 5 THR A 63 104.83 -39.87 REMARK 500 5 LEU A 69 162.29 -49.53 REMARK 500 5 THR A 74 117.76 -39.26 REMARK 500 6 SER A 3 96.36 -58.23 REMARK 500 6 PRO A 15 -165.55 -69.74 REMARK 500 6 GLU A 60 28.32 46.69 REMARK 500 6 THR A 74 111.53 -37.94 REMARK 500 6 GLU A 87 125.16 -172.34 REMARK 500 7 GLN A 13 110.44 -162.83 REMARK 500 7 PRO A 15 -169.87 -69.72 REMARK 500 REMARK 500 THIS ENTRY HAS 156 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002101540.2 RELATED DB: TARGETDB DBREF 2EDJ A 8 100 UNP Q9HCK4 ROBO2_HUMAN 417 509 SEQADV 2EDJ GLY A 1 UNP Q9HCK4 CLONING ARTIFACT SEQADV 2EDJ SER A 2 UNP Q9HCK4 CLONING ARTIFACT SEQADV 2EDJ SER A 3 UNP Q9HCK4 CLONING ARTIFACT SEQADV 2EDJ GLY A 4 UNP Q9HCK4 CLONING ARTIFACT SEQADV 2EDJ SER A 5 UNP Q9HCK4 CLONING ARTIFACT SEQADV 2EDJ SER A 6 UNP Q9HCK4 CLONING ARTIFACT SEQADV 2EDJ GLY A 7 UNP Q9HCK4 CLONING ARTIFACT SEQRES 1 A 100 GLY SER SER GLY SER SER GLY PRO PRO ILE ILE LEU GLN SEQRES 2 A 100 GLY PRO ALA ASN GLN THR LEU ALA VAL ASP GLY THR ALA SEQRES 3 A 100 LEU LEU LYS CYS LYS ALA THR GLY ASP PRO LEU PRO VAL SEQRES 4 A 100 ILE SER TRP LEU LYS GLU GLY PHE THR PHE PRO GLY ARG SEQRES 5 A 100 ASP PRO ARG ALA THR ILE GLN GLU GLN GLY THR LEU GLN SEQRES 6 A 100 ILE LYS ASN LEU ARG ILE SER ASP THR GLY THR TYR THR SEQRES 7 A 100 CYS VAL ALA THR SER SER SER GLY GLU THR SER TRP SER SEQRES 8 A 100 ALA VAL LEU ASP VAL THR GLU SER GLY SHEET 1 A 2 ILE A 10 GLN A 13 0 SHEET 2 A 2 LYS A 31 THR A 33 -1 O LYS A 31 N GLN A 13 SHEET 1 B 5 GLN A 18 ALA A 21 0 SHEET 2 B 5 ALA A 92 THR A 97 1 O THR A 97 N LEU A 20 SHEET 3 B 5 THR A 76 THR A 82 -1 N TYR A 77 O ALA A 92 SHEET 4 B 5 VAL A 39 LYS A 44 -1 N SER A 41 O VAL A 80 SHEET 5 B 5 THR A 48 PHE A 49 -1 O PHE A 49 N TRP A 42 SHEET 1 C 3 THR A 25 LEU A 28 0 SHEET 2 C 3 LEU A 64 LYS A 67 -1 O ILE A 66 N ALA A 26 SHEET 3 C 3 THR A 57 ILE A 58 -1 N THR A 57 O GLN A 65 SSBOND 1 CYS A 30 CYS A 79 1555 1555 2.02 CISPEP 1 ASP A 35 PRO A 36 1 -0.01 CISPEP 2 PHE A 49 PRO A 50 1 0.06 CISPEP 3 ASP A 35 PRO A 36 2 0.14 CISPEP 4 PHE A 49 PRO A 50 2 -0.01 CISPEP 5 ASP A 35 PRO A 36 3 0.07 CISPEP 6 PHE A 49 PRO A 50 3 0.03 CISPEP 7 ASP A 35 PRO A 36 4 0.03 CISPEP 8 PHE A 49 PRO A 50 4 -0.03 CISPEP 9 ASP A 35 PRO A 36 5 0.01 CISPEP 10 PHE A 49 PRO A 50 5 0.08 CISPEP 11 ASP A 35 PRO A 36 6 0.01 CISPEP 12 PHE A 49 PRO A 50 6 0.01 CISPEP 13 ASP A 35 PRO A 36 7 -0.01 CISPEP 14 PHE A 49 PRO A 50 7 0.05 CISPEP 15 ASP A 35 PRO A 36 8 0.05 CISPEP 16 PHE A 49 PRO A 50 8 0.04 CISPEP 17 ASP A 35 PRO A 36 9 0.04 CISPEP 18 PHE A 49 PRO A 50 9 0.05 CISPEP 19 ASP A 35 PRO A 36 10 0.08 CISPEP 20 PHE A 49 PRO A 50 10 0.05 CISPEP 21 ASP A 35 PRO A 36 11 -0.01 CISPEP 22 PHE A 49 PRO A 50 11 -0.01 CISPEP 23 ASP A 35 PRO A 36 12 0.11 CISPEP 24 PHE A 49 PRO A 50 12 -0.07 CISPEP 25 ASP A 35 PRO A 36 13 0.11 CISPEP 26 PHE A 49 PRO A 50 13 0.02 CISPEP 27 ASP A 35 PRO A 36 14 0.00 CISPEP 28 PHE A 49 PRO A 50 14 0.02 CISPEP 29 ASP A 35 PRO A 36 15 0.01 CISPEP 30 PHE A 49 PRO A 50 15 -0.02 CISPEP 31 ASP A 35 PRO A 36 16 0.02 CISPEP 32 PHE A 49 PRO A 50 16 0.06 CISPEP 33 ASP A 35 PRO A 36 17 0.03 CISPEP 34 PHE A 49 PRO A 50 17 0.01 CISPEP 35 ASP A 35 PRO A 36 18 -0.03 CISPEP 36 PHE A 49 PRO A 50 18 0.01 CISPEP 37 ASP A 35 PRO A 36 19 0.08 CISPEP 38 PHE A 49 PRO A 50 19 -0.01 CISPEP 39 ASP A 35 PRO A 36 20 -0.01 CISPEP 40 PHE A 49 PRO A 50 20 -0.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1