HEADER SIGNALING PROTEIN 15-FEB-07 2EE0 TITLE SOLUTION STRUCTURES OF THE CA DOMAIN OF HUMAN PROTOCADHERIN 9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTOCADHERIN-9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CA DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PCDH9; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060417-18; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS CA DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EE0 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EE0 1 VERSN REVDAT 1 21-AUG-07 2EE0 0 JRNL AUTH M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURES OF THE CA DOMAIN OF HUMAN PROTOCADHERIN JRNL TITL 2 9 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EE0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026547. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM CA DOMAIN U-15N, 13C; 20MM D REMARK 210 -TRIS HCL; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, MRVIEW 2.0.17, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -61.97 -99.45 REMARK 500 1 ALA A 27 143.29 -34.41 REMARK 500 1 ALA A 41 116.93 -34.85 REMARK 500 1 ASP A 112 170.27 -54.65 REMARK 500 2 SER A 2 -61.36 -101.32 REMARK 500 2 ASN A 8 140.03 -172.70 REMARK 500 2 ALA A 41 103.73 -41.40 REMARK 500 2 ASP A 42 -73.31 -57.28 REMARK 500 2 LYS A 62 -32.99 -37.63 REMARK 500 2 LEU A 64 -39.84 -39.19 REMARK 500 2 GLU A 84 -64.01 -102.69 REMARK 500 2 SER A 99 -71.99 -50.88 REMARK 500 3 ASP A 9 119.64 -174.26 REMARK 500 3 ASN A 10 97.82 -46.35 REMARK 500 3 ARG A 11 150.02 -38.20 REMARK 500 3 GLU A 16 53.78 34.79 REMARK 500 3 ASN A 46 38.18 -98.43 REMARK 500 3 VAL A 76 109.56 -57.96 REMARK 500 3 SER A 99 116.78 -173.67 REMARK 500 3 THR A 100 138.68 -36.71 REMARK 500 4 ALA A 41 97.07 -44.22 REMARK 500 4 ILE A 43 92.35 -56.11 REMARK 500 4 ASN A 46 36.20 -97.01 REMARK 500 4 ALA A 58 155.51 -42.80 REMARK 500 4 SER A 79 150.94 -40.32 REMARK 500 4 GLU A 84 -62.73 -101.45 REMARK 500 5 PRO A 12 97.88 -69.75 REMARK 500 5 ALA A 41 109.24 -52.46 REMARK 500 5 SER A 79 156.05 -46.68 REMARK 500 5 GLU A 83 -26.16 -39.25 REMARK 500 6 SER A 5 81.90 -64.08 REMARK 500 6 ASN A 10 55.61 -93.46 REMARK 500 6 LYS A 15 133.12 -38.84 REMARK 500 6 ALA A 41 -32.61 -34.45 REMARK 500 6 ASP A 42 47.79 -76.29 REMARK 500 6 ILE A 43 109.80 -58.26 REMARK 500 6 ASN A 46 93.40 -67.68 REMARK 500 6 SER A 79 162.96 -45.93 REMARK 500 6 GLU A 84 -62.26 -92.35 REMARK 500 6 THR A 100 142.60 -36.01 REMARK 500 7 VAL A 33 -73.05 -85.09 REMARK 500 7 ASP A 42 46.26 -102.16 REMARK 500 7 LYS A 62 -30.83 -39.21 REMARK 500 7 SER A 79 155.25 -44.11 REMARK 500 8 ASN A 10 54.65 -95.95 REMARK 500 8 ALA A 27 143.71 -36.51 REMARK 500 8 VAL A 33 -72.08 -72.77 REMARK 500 8 SER A 79 153.56 -47.11 REMARK 500 8 SER A 99 130.93 -34.48 REMARK 500 8 ASP A 112 179.67 -58.24 REMARK 500 REMARK 500 THIS ENTRY HAS 121 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000214.1 RELATED DB: TARGETDB DBREF 2EE0 A 8 114 UNP Q9HC56 PCDH9_HUMAN 246 352 SEQADV 2EE0 GLY A 1 UNP Q9HC56 EXPRESSION TAG SEQADV 2EE0 SER A 2 UNP Q9HC56 EXPRESSION TAG SEQADV 2EE0 SER A 3 UNP Q9HC56 EXPRESSION TAG SEQADV 2EE0 GLY A 4 UNP Q9HC56 EXPRESSION TAG SEQADV 2EE0 SER A 5 UNP Q9HC56 EXPRESSION TAG SEQADV 2EE0 SER A 6 UNP Q9HC56 EXPRESSION TAG SEQADV 2EE0 GLY A 7 UNP Q9HC56 EXPRESSION TAG SEQRES 1 A 114 GLY SER SER GLY SER SER GLY ASN ASP ASN ARG PRO VAL SEQRES 2 A 114 PHE LYS GLU GLY GLN VAL GLU VAL HIS ILE PRO GLU ASN SEQRES 3 A 114 ALA PRO VAL GLY THR SER VAL ILE GLN LEU HIS ALA THR SEQRES 4 A 114 ASP ALA ASP ILE GLY SER ASN ALA GLU ILE ARG TYR ILE SEQRES 5 A 114 PHE GLY ALA GLN VAL ALA PRO ALA THR LYS ARG LEU PHE SEQRES 6 A 114 ALA LEU ASN ASN THR THR GLY LEU ILE THR VAL GLN ARG SEQRES 7 A 114 SER LEU ASP ARG GLU GLU THR ALA ILE HIS LYS VAL THR SEQRES 8 A 114 VAL LEU ALA SER ASP GLY SER SER THR PRO ALA ARG ALA SEQRES 9 A 114 THR VAL THR ILE ASN VAL THR ASP VAL ASN HELIX 1 1 ALA A 58 LEU A 64 1 7 SHEET 1 A 4 GLN A 18 PRO A 24 0 SHEET 2 A 4 ALA A 102 THR A 111 1 O ASN A 109 N VAL A 21 SHEET 3 A 4 ILE A 87 SER A 95 -1 N HIS A 88 O ILE A 108 SHEET 4 A 4 ARG A 50 PHE A 53 -1 N ILE A 52 O LEU A 93 SHEET 1 B 3 SER A 32 GLN A 35 0 SHEET 2 B 3 LEU A 73 VAL A 76 -1 O ILE A 74 N ILE A 34 SHEET 3 B 3 PHE A 65 LEU A 67 -1 N ALA A 66 O THR A 75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1