HEADER METAL BINDING PROTEIN 15-FEB-07 2EEG TITLE SOLUTION STRUCTURE OF PDZ DOMAIN OF PDZ AND LIM DOMAIN PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PDZ AND LIM DOMAIN PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: LIM PROTEIN RIL, REVERSION-INDUCED LIM PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDLIM4; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050627-04; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN, PDZ AND LIM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, METAL BINDING KEYWDS 4 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.N.NIRAULA,T.TOMIZAWA,K.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EEG 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EEG 1 VERSN REVDAT 1 21-AUG-07 2EEG 0 JRNL AUTH T.N.NIRAULA,T.TOMIZAWA,K.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF PDZ DOMAIN OF PDZ AND LIM DOMAIN JRNL TITL 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EEG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026563. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.64MM PDZ DOMAIN U-13C,15N; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D20, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 17 -163.50 -69.74 REMARK 500 2 PRO A 17 -163.15 -69.76 REMARK 500 2 PRO A 19 -178.18 -69.75 REMARK 500 2 HIS A 40 173.90 -54.28 REMARK 500 2 ASP A 81 -68.25 -96.41 REMARK 500 3 PRO A 17 -166.86 -69.76 REMARK 500 3 PRO A 19 -178.81 -69.74 REMARK 500 4 PRO A 17 -163.47 -69.74 REMARK 500 4 HIS A 80 -68.17 -96.34 REMARK 500 4 ASP A 81 -66.79 -94.83 REMARK 500 5 PRO A 17 -163.51 -69.71 REMARK 500 5 PRO A 19 -178.37 -69.71 REMARK 500 5 HIS A 80 -61.67 -91.47 REMARK 500 5 ASP A 81 177.16 -59.55 REMARK 500 6 PRO A 17 -165.56 -69.81 REMARK 500 6 GLU A 65 -71.01 -56.22 REMARK 500 6 HIS A 80 -64.77 -96.98 REMARK 500 6 ASP A 81 -66.47 -91.94 REMARK 500 7 PRO A 19 -178.21 -69.78 REMARK 500 7 HIS A 40 170.66 -52.11 REMARK 500 7 PRO A 91 2.68 -69.75 REMARK 500 8 PRO A 17 -163.38 -69.76 REMARK 500 8 PRO A 19 -176.40 -69.74 REMARK 500 8 SER A 43 173.12 -54.30 REMARK 500 9 PRO A 17 -164.08 -69.70 REMARK 500 9 PRO A 91 -178.88 -69.76 REMARK 500 10 PRO A 17 -164.38 -69.82 REMARK 500 10 PRO A 19 -174.80 -69.78 REMARK 500 10 HIS A 80 -68.19 -97.46 REMARK 500 10 ASP A 81 -66.00 -97.70 REMARK 500 11 PRO A 17 -171.12 -69.78 REMARK 500 11 SER A 43 171.29 -58.94 REMARK 500 12 PRO A 17 -163.77 -69.74 REMARK 500 12 PRO A 19 -177.65 -69.78 REMARK 500 12 SER A 43 170.98 -54.65 REMARK 500 12 GLU A 65 -70.48 -62.67 REMARK 500 12 HIS A 80 -60.57 -97.45 REMARK 500 12 ASP A 81 -63.05 -98.01 REMARK 500 13 ASP A 81 178.09 -58.38 REMARK 500 14 PRO A 17 -168.26 -69.73 REMARK 500 14 PRO A 19 -178.17 -69.80 REMARK 500 15 PRO A 17 -164.50 -69.78 REMARK 500 15 PRO A 19 -178.25 -69.82 REMARK 500 15 ASN A 74 -38.35 -38.73 REMARK 500 15 PRO A 91 -172.45 -69.79 REMARK 500 16 PRO A 17 -168.69 -69.81 REMARK 500 16 PRO A 19 -173.14 -69.77 REMARK 500 16 HIS A 40 172.75 -57.97 REMARK 500 17 PRO A 17 -164.31 -69.74 REMARK 500 17 PRO A 91 90.19 -69.81 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002004534.1 RELATED DB: TARGETDB DBREF 2EEG A 8 88 UNP P50479 PDLI4_HUMAN 1 81 SEQADV 2EEG GLY A 1 UNP P50479 EXPRESSION TAG SEQADV 2EEG SER A 2 UNP P50479 EXPRESSION TAG SEQADV 2EEG SER A 3 UNP P50479 EXPRESSION TAG SEQADV 2EEG GLY A 4 UNP P50479 EXPRESSION TAG SEQADV 2EEG SER A 5 UNP P50479 EXPRESSION TAG SEQADV 2EEG SER A 6 UNP P50479 EXPRESSION TAG SEQADV 2EEG GLY A 7 UNP P50479 EXPRESSION TAG SEQADV 2EEG SER A 89 UNP P50479 EXPRESSION TAG SEQADV 2EEG GLY A 90 UNP P50479 EXPRESSION TAG SEQADV 2EEG PRO A 91 UNP P50479 EXPRESSION TAG SEQADV 2EEG SER A 92 UNP P50479 EXPRESSION TAG SEQADV 2EEG SER A 93 UNP P50479 EXPRESSION TAG SEQADV 2EEG GLY A 94 UNP P50479 EXPRESSION TAG SEQRES 1 A 94 GLY SER SER GLY SER SER GLY MET PRO HIS SER VAL THR SEQRES 2 A 94 LEU ARG GLY PRO SER PRO TRP GLY PHE ARG LEU VAL GLY SEQRES 3 A 94 GLY ARG ASP PHE SER ALA PRO LEU THR ILE SER ARG VAL SEQRES 4 A 94 HIS ALA GLY SER LYS ALA ALA LEU ALA ALA LEU CYS PRO SEQRES 5 A 94 GLY ASP LEU ILE GLN ALA ILE ASN GLY GLU SER THR GLU SEQRES 6 A 94 LEU MET THR HIS LEU GLU ALA GLN ASN ARG ILE LYS GLY SEQRES 7 A 94 CYS HIS ASP HIS LEU THR LEU SER VAL SER SER GLY PRO SEQRES 8 A 94 SER SER GLY HELIX 1 1 SER A 43 ALA A 48 1 6 HELIX 2 2 THR A 68 GLY A 78 1 11 SHEET 1 A 4 HIS A 10 LEU A 14 0 SHEET 2 A 4 LEU A 83 SER A 88 -1 O LEU A 85 N VAL A 12 SHEET 3 A 4 LEU A 55 ILE A 59 -1 N GLN A 57 O SER A 86 SHEET 4 A 4 GLU A 62 SER A 63 -1 O GLU A 62 N ILE A 59 SHEET 1 B 2 LEU A 24 VAL A 25 0 SHEET 2 B 2 THR A 35 ILE A 36 -1 O THR A 35 N VAL A 25 CISPEP 1 GLY A 16 PRO A 17 1 0.05 CISPEP 2 SER A 18 PRO A 19 1 -0.04 CISPEP 3 GLY A 16 PRO A 17 2 0.02 CISPEP 4 SER A 18 PRO A 19 2 -0.07 CISPEP 5 GLY A 16 PRO A 17 3 0.00 CISPEP 6 SER A 18 PRO A 19 3 -0.08 CISPEP 7 GLY A 16 PRO A 17 4 0.03 CISPEP 8 SER A 18 PRO A 19 4 -0.14 CISPEP 9 GLY A 16 PRO A 17 5 0.01 CISPEP 10 SER A 18 PRO A 19 5 -0.05 CISPEP 11 GLY A 16 PRO A 17 6 0.09 CISPEP 12 SER A 18 PRO A 19 6 -0.03 CISPEP 13 GLY A 16 PRO A 17 7 0.05 CISPEP 14 SER A 18 PRO A 19 7 0.04 CISPEP 15 GLY A 16 PRO A 17 8 0.01 CISPEP 16 SER A 18 PRO A 19 8 -0.05 CISPEP 17 GLY A 16 PRO A 17 9 0.00 CISPEP 18 SER A 18 PRO A 19 9 -0.07 CISPEP 19 GLY A 16 PRO A 17 10 0.10 CISPEP 20 SER A 18 PRO A 19 10 0.04 CISPEP 21 GLY A 16 PRO A 17 11 0.07 CISPEP 22 SER A 18 PRO A 19 11 0.03 CISPEP 23 GLY A 16 PRO A 17 12 0.04 CISPEP 24 SER A 18 PRO A 19 12 0.00 CISPEP 25 GLY A 16 PRO A 17 13 0.02 CISPEP 26 SER A 18 PRO A 19 13 -0.04 CISPEP 27 GLY A 16 PRO A 17 14 0.05 CISPEP 28 SER A 18 PRO A 19 14 0.04 CISPEP 29 GLY A 16 PRO A 17 15 0.07 CISPEP 30 SER A 18 PRO A 19 15 0.04 CISPEP 31 GLY A 16 PRO A 17 16 0.09 CISPEP 32 SER A 18 PRO A 19 16 -0.06 CISPEP 33 GLY A 16 PRO A 17 17 0.04 CISPEP 34 SER A 18 PRO A 19 17 -0.07 CISPEP 35 GLY A 16 PRO A 17 18 0.05 CISPEP 36 SER A 18 PRO A 19 18 -0.01 CISPEP 37 GLY A 16 PRO A 17 19 0.07 CISPEP 38 SER A 18 PRO A 19 19 0.00 CISPEP 39 GLY A 16 PRO A 17 20 0.05 CISPEP 40 SER A 18 PRO A 19 20 0.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1