data_2EF4 # _entry.id 2EF4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2EF4 pdb_00002ef4 10.2210/pdb2ef4/pdb RCSB RCSB026587 ? ? WWPDB D_1000026587 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2EF5 . unspecified TargetDB ttk003000367.3 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2EF4 _pdbx_database_status.recvd_initial_deposition_date 2007-02-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kumarevel, T.S.' 1 'Karthe, P.' 2 'Kuramitsu, S.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Crystal structure of the arginase from thermus thermophilus' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kumarevel, T.S.' 1 ? primary 'Karthe, P.' 2 ? primary 'Kuramitsu, S.' 3 ? primary 'Yokoyama, S.' 4 ? # _cell.entry_id 2EF4 _cell.length_a 121.572 _cell.length_b 121.572 _cell.length_c 121.572 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2EF4 _symmetry.space_group_name_H-M 'P 42 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 208 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Arginase 31138.951 1 3.5.3.1 ? ? ? 2 water nat water 18.015 100 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ERVAVVGVPMDLGANRRGVDMGPSALRYARLLEQLEDLGYTVEDLGDVPVSLARASRRRGRGLAYLEEIRAAALVLKERL AALPEGVFPIVLGGDHSLSMGSVAGAARGRRVGVVWVDAHADFNTPETSPSGNVHGMPLAVLSGLGHPRLTEVFRAVDPK DVVLVGVRSLDPGEKRLLKEAGVRVYTMHEVDRLGVARIAEEVLKHLQGLPLHVSLDADVLDPTLAPGVGTPVPGGLTYR EAHLLMEILAESGRVQSLDLVEVNPILDERNRTAEMLVGLALSLLGKRIF ; _entity_poly.pdbx_seq_one_letter_code_can ;ERVAVVGVPMDLGANRRGVDMGPSALRYARLLEQLEDLGYTVEDLGDVPVSLARASRRRGRGLAYLEEIRAAALVLKERL AALPEGVFPIVLGGDHSLSMGSVAGAARGRRVGVVWVDAHADFNTPETSPSGNVHGMPLAVLSGLGHPRLTEVFRAVDPK DVVLVGVRSLDPGEKRLLKEAGVRVYTMHEVDRLGVARIAEEVLKHLQGLPLHVSLDADVLDPTLAPGVGTPVPGGLTYR EAHLLMEILAESGRVQSLDLVEVNPILDERNRTAEMLVGLALSLLGKRIF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ttk003000367.3 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ARG n 1 3 VAL n 1 4 ALA n 1 5 VAL n 1 6 VAL n 1 7 GLY n 1 8 VAL n 1 9 PRO n 1 10 MET n 1 11 ASP n 1 12 LEU n 1 13 GLY n 1 14 ALA n 1 15 ASN n 1 16 ARG n 1 17 ARG n 1 18 GLY n 1 19 VAL n 1 20 ASP n 1 21 MET n 1 22 GLY n 1 23 PRO n 1 24 SER n 1 25 ALA n 1 26 LEU n 1 27 ARG n 1 28 TYR n 1 29 ALA n 1 30 ARG n 1 31 LEU n 1 32 LEU n 1 33 GLU n 1 34 GLN n 1 35 LEU n 1 36 GLU n 1 37 ASP n 1 38 LEU n 1 39 GLY n 1 40 TYR n 1 41 THR n 1 42 VAL n 1 43 GLU n 1 44 ASP n 1 45 LEU n 1 46 GLY n 1 47 ASP n 1 48 VAL n 1 49 PRO n 1 50 VAL n 1 51 SER n 1 52 LEU n 1 53 ALA n 1 54 ARG n 1 55 ALA n 1 56 SER n 1 57 ARG n 1 58 ARG n 1 59 ARG n 1 60 GLY n 1 61 ARG n 1 62 GLY n 1 63 LEU n 1 64 ALA n 1 65 TYR n 1 66 LEU n 1 67 GLU n 1 68 GLU n 1 69 ILE n 1 70 ARG n 1 71 ALA n 1 72 ALA n 1 73 ALA n 1 74 LEU n 1 75 VAL n 1 76 LEU n 1 77 LYS n 1 78 GLU n 1 79 ARG n 1 80 LEU n 1 81 ALA n 1 82 ALA n 1 83 LEU n 1 84 PRO n 1 85 GLU n 1 86 GLY n 1 87 VAL n 1 88 PHE n 1 89 PRO n 1 90 ILE n 1 91 VAL n 1 92 LEU n 1 93 GLY n 1 94 GLY n 1 95 ASP n 1 96 HIS n 1 97 SER n 1 98 LEU n 1 99 SER n 1 100 MET n 1 101 GLY n 1 102 SER n 1 103 VAL n 1 104 ALA n 1 105 GLY n 1 106 ALA n 1 107 ALA n 1 108 ARG n 1 109 GLY n 1 110 ARG n 1 111 ARG n 1 112 VAL n 1 113 GLY n 1 114 VAL n 1 115 VAL n 1 116 TRP n 1 117 VAL n 1 118 ASP n 1 119 ALA n 1 120 HIS n 1 121 ALA n 1 122 ASP n 1 123 PHE n 1 124 ASN n 1 125 THR n 1 126 PRO n 1 127 GLU n 1 128 THR n 1 129 SER n 1 130 PRO n 1 131 SER n 1 132 GLY n 1 133 ASN n 1 134 VAL n 1 135 HIS n 1 136 GLY n 1 137 MET n 1 138 PRO n 1 139 LEU n 1 140 ALA n 1 141 VAL n 1 142 LEU n 1 143 SER n 1 144 GLY n 1 145 LEU n 1 146 GLY n 1 147 HIS n 1 148 PRO n 1 149 ARG n 1 150 LEU n 1 151 THR n 1 152 GLU n 1 153 VAL n 1 154 PHE n 1 155 ARG n 1 156 ALA n 1 157 VAL n 1 158 ASP n 1 159 PRO n 1 160 LYS n 1 161 ASP n 1 162 VAL n 1 163 VAL n 1 164 LEU n 1 165 VAL n 1 166 GLY n 1 167 VAL n 1 168 ARG n 1 169 SER n 1 170 LEU n 1 171 ASP n 1 172 PRO n 1 173 GLY n 1 174 GLU n 1 175 LYS n 1 176 ARG n 1 177 LEU n 1 178 LEU n 1 179 LYS n 1 180 GLU n 1 181 ALA n 1 182 GLY n 1 183 VAL n 1 184 ARG n 1 185 VAL n 1 186 TYR n 1 187 THR n 1 188 MET n 1 189 HIS n 1 190 GLU n 1 191 VAL n 1 192 ASP n 1 193 ARG n 1 194 LEU n 1 195 GLY n 1 196 VAL n 1 197 ALA n 1 198 ARG n 1 199 ILE n 1 200 ALA n 1 201 GLU n 1 202 GLU n 1 203 VAL n 1 204 LEU n 1 205 LYS n 1 206 HIS n 1 207 LEU n 1 208 GLN n 1 209 GLY n 1 210 LEU n 1 211 PRO n 1 212 LEU n 1 213 HIS n 1 214 VAL n 1 215 SER n 1 216 LEU n 1 217 ASP n 1 218 ALA n 1 219 ASP n 1 220 VAL n 1 221 LEU n 1 222 ASP n 1 223 PRO n 1 224 THR n 1 225 LEU n 1 226 ALA n 1 227 PRO n 1 228 GLY n 1 229 VAL n 1 230 GLY n 1 231 THR n 1 232 PRO n 1 233 VAL n 1 234 PRO n 1 235 GLY n 1 236 GLY n 1 237 LEU n 1 238 THR n 1 239 TYR n 1 240 ARG n 1 241 GLU n 1 242 ALA n 1 243 HIS n 1 244 LEU n 1 245 LEU n 1 246 MET n 1 247 GLU n 1 248 ILE n 1 249 LEU n 1 250 ALA n 1 251 GLU n 1 252 SER n 1 253 GLY n 1 254 ARG n 1 255 VAL n 1 256 GLN n 1 257 SER n 1 258 LEU n 1 259 ASP n 1 260 LEU n 1 261 VAL n 1 262 GLU n 1 263 VAL n 1 264 ASN n 1 265 PRO n 1 266 ILE n 1 267 LEU n 1 268 ASP n 1 269 GLU n 1 270 ARG n 1 271 ASN n 1 272 ARG n 1 273 THR n 1 274 ALA n 1 275 GLU n 1 276 MET n 1 277 LEU n 1 278 VAL n 1 279 GLY n 1 280 LEU n 1 281 ALA n 1 282 LEU n 1 283 SER n 1 284 LEU n 1 285 LEU n 1 286 GLY n 1 287 LYS n 1 288 ARG n 1 289 ILE n 1 290 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene tthh1496 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5SI78_THET8 _struct_ref.pdbx_db_accession Q5SI78 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ERVAVVGVPMDLGANRRGVDMGPSALRYARLLEQLEDLGYTVEDLGDVPVSLARASRRRGRGLAYLEEIRAAALVLKERL AALPEGVFPIVLGGDHSLSMGSVAGAARGRRVGVVWVDAHADFNTPETSPSGNVHGMPLAVLSGLGHPRLTEVFRAVDPK DVVLVGVRSLDPGEKRLLKEAGVRVYTMHEVDRLGVARIAEEVLKHLQGLPLHVSLDADVLDPTLAPGVGTPVPGGLTYR EAHLLMEILAESGRVQSLDLVEVNPILDERNRTAEMLVGLALSLLGKRIF ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2EF4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 290 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5SI78 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 291 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 291 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2EF4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_percent_sol 48.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '50% PEG 200, 0.1M Citrate, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 180 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2006-10-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 2EF4 _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.3 _reflns.number_obs 14250 _reflns.number_all 14250 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 30.8 _reflns.pdbx_redundancy 40.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.3 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.474 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 42.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1384 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2EF4 _refine.ls_number_reflns_obs 13690 _refine.ls_number_reflns_all 14250 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 582402.50 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.99 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 96.3 _refine.ls_R_factor_obs 0.254 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.254 _refine.ls_R_factor_R_free 0.259 _refine.ls_R_factor_R_free_error 0.013 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 3.1 _refine.ls_number_reflns_R_free 421 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 41.3 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.365564 _refine.solvent_model_param_bsol 48.3647 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 5CEV _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2EF4 _refine_analyze.Luzzati_coordinate_error_obs 0.34 _refine_analyze.Luzzati_sigma_a_obs 0.34 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.43 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2117 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 100 _refine_hist.number_atoms_total 2217 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 19.99 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.1 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.90 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 0.00 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 0.00 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 0.00 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 0.00 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 0 _refine_ls_shell.R_factor_R_work 0.259 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 dna-rna_rep.param dna-rna_rep.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 2EF4 _struct.title 'Crystal structure of the arginase from thermus thermophilus' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2EF4 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Arginase, ttha1496, thermus thermophilus, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, HYDROLASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ;multimer. may form hexamer using y+1/2,x+1/2,-z+1/2; -x+1/2, -z+1/2, -y+1/2; z+1/2, -y+1/2, x+1/2; x, y+1, z+1; -z,-x+1, y+1; -y, z+1, -x+1 ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 18 ? ASP A 20 ? GLY A 19 ASP A 21 5 ? 3 HELX_P HELX_P2 2 MET A 21 ? ALA A 29 ? MET A 22 ALA A 30 1 ? 9 HELX_P HELX_P3 3 ARG A 30 ? GLY A 39 ? ARG A 31 GLY A 40 1 ? 10 HELX_P HELX_P4 4 TYR A 65 ? ALA A 82 ? TYR A 66 ALA A 83 1 ? 18 HELX_P HELX_P5 5 ASP A 95 ? SER A 97 ? ASP A 96 SER A 98 5 ? 3 HELX_P HELX_P6 6 LEU A 98 ? ALA A 107 ? LEU A 99 ALA A 108 1 ? 10 HELX_P HELX_P7 7 ASN A 133 ? GLY A 136 ? ASN A 134 GLY A 137 5 ? 4 HELX_P HELX_P8 8 MET A 137 ? SER A 143 ? MET A 138 SER A 144 1 ? 7 HELX_P HELX_P9 9 HIS A 147 ? ARG A 155 ? HIS A 148 ARG A 156 1 ? 9 HELX_P HELX_P10 10 ASP A 158 ? LYS A 160 ? ASP A 159 LYS A 161 5 ? 3 HELX_P HELX_P11 11 ASP A 171 ? GLY A 182 ? ASP A 172 GLY A 183 1 ? 12 HELX_P HELX_P12 12 MET A 188 ? GLY A 195 ? MET A 189 GLY A 196 1 ? 8 HELX_P HELX_P13 13 GLY A 195 ? LEU A 207 ? GLY A 196 LEU A 208 1 ? 13 HELX_P HELX_P14 14 ASP A 219 ? LEU A 221 ? ASP A 220 LEU A 222 5 ? 3 HELX_P HELX_P15 15 THR A 238 ? GLY A 253 ? THR A 239 GLY A 254 1 ? 16 HELX_P HELX_P16 16 ASN A 271 ? LEU A 285 ? ASN A 272 LEU A 286 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 41 ? ASP A 47 ? THR A 42 ASP A 48 A 2 ARG A 2 ? VAL A 8 ? ARG A 3 VAL A 9 A 3 VAL A 87 ? GLY A 93 ? VAL A 88 GLY A 94 A 4 VAL A 255 ? VAL A 261 ? VAL A 256 VAL A 262 A 5 LEU A 212 ? ASP A 217 ? LEU A 213 ASP A 218 A 6 GLY A 113 ? VAL A 117 ? GLY A 114 VAL A 118 A 7 VAL A 162 ? VAL A 167 ? VAL A 163 VAL A 168 A 8 ARG A 184 ? THR A 187 ? ARG A 185 THR A 188 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 45 ? O LEU A 46 N VAL A 5 ? N VAL A 6 A 2 3 N ARG A 2 ? N ARG A 3 O PHE A 88 ? O PHE A 89 A 3 4 N VAL A 91 ? N VAL A 92 O LEU A 260 ? O LEU A 261 A 4 5 O GLN A 256 ? O GLN A 257 N LEU A 212 ? N LEU A 213 A 5 6 O HIS A 213 ? O HIS A 214 N GLY A 113 ? N GLY A 114 A 6 7 N VAL A 114 ? N VAL A 115 O VAL A 163 ? O VAL A 164 A 7 8 N LEU A 164 ? N LEU A 165 O TYR A 186 ? O TYR A 187 # _database_PDB_matrix.entry_id 2EF4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2EF4 _atom_sites.fract_transf_matrix[1][1] 0.008226 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008226 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008226 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 2 2 GLU GLU A . n A 1 2 ARG 2 3 3 ARG ARG A . n A 1 3 VAL 3 4 4 VAL VAL A . n A 1 4 ALA 4 5 5 ALA ALA A . n A 1 5 VAL 5 6 6 VAL VAL A . n A 1 6 VAL 6 7 7 VAL VAL A . n A 1 7 GLY 7 8 8 GLY GLY A . n A 1 8 VAL 8 9 9 VAL VAL A . n A 1 9 PRO 9 10 10 PRO PRO A . n A 1 10 MET 10 11 11 MET MET A . n A 1 11 ASP 11 12 12 ASP ASP A . n A 1 12 LEU 12 13 13 LEU LEU A . n A 1 13 GLY 13 14 14 GLY GLY A . n A 1 14 ALA 14 15 15 ALA ALA A . n A 1 15 ASN 15 16 16 ASN ASN A . n A 1 16 ARG 16 17 17 ARG ARG A . n A 1 17 ARG 17 18 18 ARG ARG A . n A 1 18 GLY 18 19 19 GLY GLY A . n A 1 19 VAL 19 20 20 VAL VAL A . n A 1 20 ASP 20 21 21 ASP ASP A . n A 1 21 MET 21 22 22 MET MET A . n A 1 22 GLY 22 23 23 GLY GLY A . n A 1 23 PRO 23 24 24 PRO PRO A . n A 1 24 SER 24 25 25 SER SER A . n A 1 25 ALA 25 26 26 ALA ALA A . n A 1 26 LEU 26 27 27 LEU LEU A . n A 1 27 ARG 27 28 28 ARG ARG A . n A 1 28 TYR 28 29 29 TYR TYR A . n A 1 29 ALA 29 30 30 ALA ALA A . n A 1 30 ARG 30 31 31 ARG ARG A . n A 1 31 LEU 31 32 32 LEU LEU A . n A 1 32 LEU 32 33 33 LEU LEU A . n A 1 33 GLU 33 34 34 GLU GLU A . n A 1 34 GLN 34 35 35 GLN GLN A . n A 1 35 LEU 35 36 36 LEU LEU A . n A 1 36 GLU 36 37 37 GLU GLU A . n A 1 37 ASP 37 38 38 ASP ASP A . n A 1 38 LEU 38 39 39 LEU LEU A . n A 1 39 GLY 39 40 40 GLY GLY A . n A 1 40 TYR 40 41 41 TYR TYR A . n A 1 41 THR 41 42 42 THR THR A . n A 1 42 VAL 42 43 43 VAL VAL A . n A 1 43 GLU 43 44 44 GLU GLU A . n A 1 44 ASP 44 45 45 ASP ASP A . n A 1 45 LEU 45 46 46 LEU LEU A . n A 1 46 GLY 46 47 47 GLY GLY A . n A 1 47 ASP 47 48 48 ASP ASP A . n A 1 48 VAL 48 49 49 VAL VAL A . n A 1 49 PRO 49 50 50 PRO PRO A . n A 1 50 VAL 50 51 51 VAL VAL A . n A 1 51 SER 51 52 52 SER SER A . n A 1 52 LEU 52 53 53 LEU LEU A . n A 1 53 ALA 53 54 54 ALA ALA A . n A 1 54 ARG 54 55 55 ARG ARG A . n A 1 55 ALA 55 56 ? ? ? A . n A 1 56 SER 56 57 ? ? ? A . n A 1 57 ARG 57 58 ? ? ? A . n A 1 58 ARG 58 59 ? ? ? A . n A 1 59 ARG 59 60 ? ? ? A . n A 1 60 GLY 60 61 ? ? ? A . n A 1 61 ARG 61 62 ? ? ? A . n A 1 62 GLY 62 63 ? ? ? A . n A 1 63 LEU 63 64 64 LEU LEU A . n A 1 64 ALA 64 65 65 ALA ALA A . n A 1 65 TYR 65 66 66 TYR TYR A . n A 1 66 LEU 66 67 67 LEU LEU A . n A 1 67 GLU 67 68 68 GLU GLU A . n A 1 68 GLU 68 69 69 GLU GLU A . n A 1 69 ILE 69 70 70 ILE ILE A . n A 1 70 ARG 70 71 71 ARG ARG A . n A 1 71 ALA 71 72 72 ALA ALA A . n A 1 72 ALA 72 73 73 ALA ALA A . n A 1 73 ALA 73 74 74 ALA ALA A . n A 1 74 LEU 74 75 75 LEU LEU A . n A 1 75 VAL 75 76 76 VAL VAL A . n A 1 76 LEU 76 77 77 LEU LEU A . n A 1 77 LYS 77 78 78 LYS LYS A . n A 1 78 GLU 78 79 79 GLU GLU A . n A 1 79 ARG 79 80 80 ARG ARG A . n A 1 80 LEU 80 81 81 LEU LEU A . n A 1 81 ALA 81 82 82 ALA ALA A . n A 1 82 ALA 82 83 83 ALA ALA A . n A 1 83 LEU 83 84 84 LEU LEU A . n A 1 84 PRO 84 85 85 PRO PRO A . n A 1 85 GLU 85 86 86 GLU GLU A . n A 1 86 GLY 86 87 87 GLY GLY A . n A 1 87 VAL 87 88 88 VAL VAL A . n A 1 88 PHE 88 89 89 PHE PHE A . n A 1 89 PRO 89 90 90 PRO PRO A . n A 1 90 ILE 90 91 91 ILE ILE A . n A 1 91 VAL 91 92 92 VAL VAL A . n A 1 92 LEU 92 93 93 LEU LEU A . n A 1 93 GLY 93 94 94 GLY GLY A . n A 1 94 GLY 94 95 95 GLY GLY A . n A 1 95 ASP 95 96 96 ASP ASP A . n A 1 96 HIS 96 97 97 HIS HIS A . n A 1 97 SER 97 98 98 SER SER A . n A 1 98 LEU 98 99 99 LEU LEU A . n A 1 99 SER 99 100 100 SER SER A . n A 1 100 MET 100 101 101 MET MET A . n A 1 101 GLY 101 102 102 GLY GLY A . n A 1 102 SER 102 103 103 SER SER A . n A 1 103 VAL 103 104 104 VAL VAL A . n A 1 104 ALA 104 105 105 ALA ALA A . n A 1 105 GLY 105 106 106 GLY GLY A . n A 1 106 ALA 106 107 107 ALA ALA A . n A 1 107 ALA 107 108 108 ALA ALA A . n A 1 108 ARG 108 109 109 ARG ARG A . n A 1 109 GLY 109 110 110 GLY GLY A . n A 1 110 ARG 110 111 111 ARG ARG A . n A 1 111 ARG 111 112 112 ARG ARG A . n A 1 112 VAL 112 113 113 VAL VAL A . n A 1 113 GLY 113 114 114 GLY GLY A . n A 1 114 VAL 114 115 115 VAL VAL A . n A 1 115 VAL 115 116 116 VAL VAL A . n A 1 116 TRP 116 117 117 TRP TRP A . n A 1 117 VAL 117 118 118 VAL VAL A . n A 1 118 ASP 118 119 119 ASP ASP A . n A 1 119 ALA 119 120 120 ALA ALA A . n A 1 120 HIS 120 121 121 HIS HIS A . n A 1 121 ALA 121 122 122 ALA ALA A . n A 1 122 ASP 122 123 123 ASP ASP A . n A 1 123 PHE 123 124 124 PHE PHE A . n A 1 124 ASN 124 125 125 ASN ASN A . n A 1 125 THR 125 126 126 THR THR A . n A 1 126 PRO 126 127 127 PRO PRO A . n A 1 127 GLU 127 128 128 GLU GLU A . n A 1 128 THR 128 129 129 THR THR A . n A 1 129 SER 129 130 130 SER SER A . n A 1 130 PRO 130 131 131 PRO PRO A . n A 1 131 SER 131 132 132 SER SER A . n A 1 132 GLY 132 133 133 GLY GLY A . n A 1 133 ASN 133 134 134 ASN ASN A . n A 1 134 VAL 134 135 135 VAL VAL A . n A 1 135 HIS 135 136 136 HIS HIS A . n A 1 136 GLY 136 137 137 GLY GLY A . n A 1 137 MET 137 138 138 MET MET A . n A 1 138 PRO 138 139 139 PRO PRO A . n A 1 139 LEU 139 140 140 LEU LEU A . n A 1 140 ALA 140 141 141 ALA ALA A . n A 1 141 VAL 141 142 142 VAL VAL A . n A 1 142 LEU 142 143 143 LEU LEU A . n A 1 143 SER 143 144 144 SER SER A . n A 1 144 GLY 144 145 145 GLY GLY A . n A 1 145 LEU 145 146 146 LEU LEU A . n A 1 146 GLY 146 147 147 GLY GLY A . n A 1 147 HIS 147 148 148 HIS HIS A . n A 1 148 PRO 148 149 149 PRO PRO A . n A 1 149 ARG 149 150 150 ARG ARG A . n A 1 150 LEU 150 151 151 LEU LEU A . n A 1 151 THR 151 152 152 THR THR A . n A 1 152 GLU 152 153 153 GLU GLU A . n A 1 153 VAL 153 154 154 VAL VAL A . n A 1 154 PHE 154 155 155 PHE PHE A . n A 1 155 ARG 155 156 156 ARG ARG A . n A 1 156 ALA 156 157 157 ALA ALA A . n A 1 157 VAL 157 158 158 VAL VAL A . n A 1 158 ASP 158 159 159 ASP ASP A . n A 1 159 PRO 159 160 160 PRO PRO A . n A 1 160 LYS 160 161 161 LYS LYS A . n A 1 161 ASP 161 162 162 ASP ASP A . n A 1 162 VAL 162 163 163 VAL VAL A . n A 1 163 VAL 163 164 164 VAL VAL A . n A 1 164 LEU 164 165 165 LEU LEU A . n A 1 165 VAL 165 166 166 VAL VAL A . n A 1 166 GLY 166 167 167 GLY GLY A . n A 1 167 VAL 167 168 168 VAL VAL A . n A 1 168 ARG 168 169 169 ARG ARG A . n A 1 169 SER 169 170 170 SER SER A . n A 1 170 LEU 170 171 171 LEU LEU A . n A 1 171 ASP 171 172 172 ASP ASP A . n A 1 172 PRO 172 173 173 PRO PRO A . n A 1 173 GLY 173 174 174 GLY GLY A . n A 1 174 GLU 174 175 175 GLU GLU A . n A 1 175 LYS 175 176 176 LYS LYS A . n A 1 176 ARG 176 177 177 ARG ARG A . n A 1 177 LEU 177 178 178 LEU LEU A . n A 1 178 LEU 178 179 179 LEU LEU A . n A 1 179 LYS 179 180 180 LYS LYS A . n A 1 180 GLU 180 181 181 GLU GLU A . n A 1 181 ALA 181 182 182 ALA ALA A . n A 1 182 GLY 182 183 183 GLY GLY A . n A 1 183 VAL 183 184 184 VAL VAL A . n A 1 184 ARG 184 185 185 ARG ARG A . n A 1 185 VAL 185 186 186 VAL VAL A . n A 1 186 TYR 186 187 187 TYR TYR A . n A 1 187 THR 187 188 188 THR THR A . n A 1 188 MET 188 189 189 MET MET A . n A 1 189 HIS 189 190 190 HIS HIS A . n A 1 190 GLU 190 191 191 GLU GLU A . n A 1 191 VAL 191 192 192 VAL VAL A . n A 1 192 ASP 192 193 193 ASP ASP A . n A 1 193 ARG 193 194 194 ARG ARG A . n A 1 194 LEU 194 195 195 LEU LEU A . n A 1 195 GLY 195 196 196 GLY GLY A . n A 1 196 VAL 196 197 197 VAL VAL A . n A 1 197 ALA 197 198 198 ALA ALA A . n A 1 198 ARG 198 199 199 ARG ARG A . n A 1 199 ILE 199 200 200 ILE ILE A . n A 1 200 ALA 200 201 201 ALA ALA A . n A 1 201 GLU 201 202 202 GLU GLU A . n A 1 202 GLU 202 203 203 GLU GLU A . n A 1 203 VAL 203 204 204 VAL VAL A . n A 1 204 LEU 204 205 205 LEU LEU A . n A 1 205 LYS 205 206 206 LYS LYS A . n A 1 206 HIS 206 207 207 HIS HIS A . n A 1 207 LEU 207 208 208 LEU LEU A . n A 1 208 GLN 208 209 209 GLN GLN A . n A 1 209 GLY 209 210 210 GLY GLY A . n A 1 210 LEU 210 211 211 LEU LEU A . n A 1 211 PRO 211 212 212 PRO PRO A . n A 1 212 LEU 212 213 213 LEU LEU A . n A 1 213 HIS 213 214 214 HIS HIS A . n A 1 214 VAL 214 215 215 VAL VAL A . n A 1 215 SER 215 216 216 SER SER A . n A 1 216 LEU 216 217 217 LEU LEU A . n A 1 217 ASP 217 218 218 ASP ASP A . n A 1 218 ALA 218 219 219 ALA ALA A . n A 1 219 ASP 219 220 220 ASP ASP A . n A 1 220 VAL 220 221 221 VAL VAL A . n A 1 221 LEU 221 222 222 LEU LEU A . n A 1 222 ASP 222 223 223 ASP ASP A . n A 1 223 PRO 223 224 224 PRO PRO A . n A 1 224 THR 224 225 225 THR THR A . n A 1 225 LEU 225 226 226 LEU LEU A . n A 1 226 ALA 226 227 227 ALA ALA A . n A 1 227 PRO 227 228 228 PRO PRO A . n A 1 228 GLY 228 229 229 GLY GLY A . n A 1 229 VAL 229 230 230 VAL VAL A . n A 1 230 GLY 230 231 231 GLY GLY A . n A 1 231 THR 231 232 232 THR THR A . n A 1 232 PRO 232 233 233 PRO PRO A . n A 1 233 VAL 233 234 234 VAL VAL A . n A 1 234 PRO 234 235 235 PRO PRO A . n A 1 235 GLY 235 236 236 GLY GLY A . n A 1 236 GLY 236 237 237 GLY GLY A . n A 1 237 LEU 237 238 238 LEU LEU A . n A 1 238 THR 238 239 239 THR THR A . n A 1 239 TYR 239 240 240 TYR TYR A . n A 1 240 ARG 240 241 241 ARG ARG A . n A 1 241 GLU 241 242 242 GLU GLU A . n A 1 242 ALA 242 243 243 ALA ALA A . n A 1 243 HIS 243 244 244 HIS HIS A . n A 1 244 LEU 244 245 245 LEU LEU A . n A 1 245 LEU 245 246 246 LEU LEU A . n A 1 246 MET 246 247 247 MET MET A . n A 1 247 GLU 247 248 248 GLU GLU A . n A 1 248 ILE 248 249 249 ILE ILE A . n A 1 249 LEU 249 250 250 LEU LEU A . n A 1 250 ALA 250 251 251 ALA ALA A . n A 1 251 GLU 251 252 252 GLU GLU A . n A 1 252 SER 252 253 253 SER SER A . n A 1 253 GLY 253 254 254 GLY GLY A . n A 1 254 ARG 254 255 255 ARG ARG A . n A 1 255 VAL 255 256 256 VAL VAL A . n A 1 256 GLN 256 257 257 GLN GLN A . n A 1 257 SER 257 258 258 SER SER A . n A 1 258 LEU 258 259 259 LEU LEU A . n A 1 259 ASP 259 260 260 ASP ASP A . n A 1 260 LEU 260 261 261 LEU LEU A . n A 1 261 VAL 261 262 262 VAL VAL A . n A 1 262 GLU 262 263 263 GLU GLU A . n A 1 263 VAL 263 264 264 VAL VAL A . n A 1 264 ASN 264 265 265 ASN ASN A . n A 1 265 PRO 265 266 266 PRO PRO A . n A 1 266 ILE 266 267 267 ILE ILE A . n A 1 267 LEU 267 268 268 LEU LEU A . n A 1 268 ASP 268 269 269 ASP ASP A . n A 1 269 GLU 269 270 270 GLU GLU A . n A 1 270 ARG 270 271 271 ARG ARG A . n A 1 271 ASN 271 272 272 ASN ASN A . n A 1 272 ARG 272 273 273 ARG ARG A . n A 1 273 THR 273 274 274 THR THR A . n A 1 274 ALA 274 275 275 ALA ALA A . n A 1 275 GLU 275 276 276 GLU GLU A . n A 1 276 MET 276 277 277 MET MET A . n A 1 277 LEU 277 278 278 LEU LEU A . n A 1 278 VAL 278 279 279 VAL VAL A . n A 1 279 GLY 279 280 280 GLY GLY A . n A 1 280 LEU 280 281 281 LEU LEU A . n A 1 281 ALA 281 282 282 ALA ALA A . n A 1 282 LEU 282 283 283 LEU LEU A . n A 1 283 SER 283 284 284 SER SER A . n A 1 284 LEU 284 285 285 LEU LEU A . n A 1 285 LEU 285 286 286 LEU LEU A . n A 1 286 GLY 286 287 287 GLY GLY A . n A 1 287 LYS 287 288 288 LYS LYS A . n A 1 288 ARG 288 289 289 ARG ARG A . n A 1 289 ILE 289 290 290 ILE ILE A . n A 1 290 PHE 290 291 291 PHE PHE A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 292 1 HOH HOH A . B 2 HOH 2 293 2 HOH HOH A . B 2 HOH 3 294 3 HOH HOH A . B 2 HOH 4 295 4 HOH HOH A . B 2 HOH 5 296 5 HOH HOH A . B 2 HOH 6 297 6 HOH HOH A . B 2 HOH 7 298 7 HOH HOH A . B 2 HOH 8 299 8 HOH HOH A . B 2 HOH 9 300 9 HOH HOH A . B 2 HOH 10 301 10 HOH HOH A . B 2 HOH 11 302 11 HOH HOH A . B 2 HOH 12 303 12 HOH HOH A . B 2 HOH 13 304 13 HOH HOH A . B 2 HOH 14 305 14 HOH HOH A . B 2 HOH 15 306 15 HOH HOH A . B 2 HOH 16 307 16 HOH HOH A . B 2 HOH 17 308 17 HOH HOH A . B 2 HOH 18 309 18 HOH HOH A . B 2 HOH 19 310 19 HOH HOH A . B 2 HOH 20 311 20 HOH HOH A . B 2 HOH 21 312 21 HOH HOH A . B 2 HOH 22 313 22 HOH HOH A . B 2 HOH 23 314 23 HOH HOH A . B 2 HOH 24 315 24 HOH HOH A . B 2 HOH 25 316 25 HOH HOH A . B 2 HOH 26 317 26 HOH HOH A . B 2 HOH 27 318 27 HOH HOH A . B 2 HOH 28 319 28 HOH HOH A . B 2 HOH 29 320 29 HOH HOH A . B 2 HOH 30 321 30 HOH HOH A . B 2 HOH 31 322 31 HOH HOH A . B 2 HOH 32 323 32 HOH HOH A . B 2 HOH 33 324 33 HOH HOH A . B 2 HOH 34 325 34 HOH HOH A . B 2 HOH 35 326 35 HOH HOH A . B 2 HOH 36 327 36 HOH HOH A . B 2 HOH 37 328 37 HOH HOH A . B 2 HOH 38 329 38 HOH HOH A . B 2 HOH 39 330 39 HOH HOH A . B 2 HOH 40 331 40 HOH HOH A . B 2 HOH 41 332 41 HOH HOH A . B 2 HOH 42 333 42 HOH HOH A . B 2 HOH 43 334 43 HOH HOH A . B 2 HOH 44 335 44 HOH HOH A . B 2 HOH 45 336 45 HOH HOH A . B 2 HOH 46 337 46 HOH HOH A . B 2 HOH 47 338 47 HOH HOH A . B 2 HOH 48 339 48 HOH HOH A . B 2 HOH 49 340 49 HOH HOH A . B 2 HOH 50 341 50 HOH HOH A . B 2 HOH 51 342 51 HOH HOH A . B 2 HOH 52 343 52 HOH HOH A . B 2 HOH 53 344 53 HOH HOH A . B 2 HOH 54 345 54 HOH HOH A . B 2 HOH 55 346 55 HOH HOH A . B 2 HOH 56 347 56 HOH HOH A . B 2 HOH 57 348 60 HOH HOH A . B 2 HOH 58 349 61 HOH HOH A . B 2 HOH 59 350 62 HOH HOH A . B 2 HOH 60 351 63 HOH HOH A . B 2 HOH 61 352 66 HOH HOH A . B 2 HOH 62 353 67 HOH HOH A . B 2 HOH 63 354 68 HOH HOH A . B 2 HOH 64 355 69 HOH HOH A . B 2 HOH 65 356 70 HOH HOH A . B 2 HOH 66 357 71 HOH HOH A . B 2 HOH 67 358 72 HOH HOH A . B 2 HOH 68 359 73 HOH HOH A . B 2 HOH 69 360 74 HOH HOH A . B 2 HOH 70 361 75 HOH HOH A . B 2 HOH 71 362 76 HOH HOH A . B 2 HOH 72 363 77 HOH HOH A . B 2 HOH 73 364 78 HOH HOH A . B 2 HOH 74 365 79 HOH HOH A . B 2 HOH 75 366 80 HOH HOH A . B 2 HOH 76 367 81 HOH HOH A . B 2 HOH 77 368 82 HOH HOH A . B 2 HOH 78 369 83 HOH HOH A . B 2 HOH 79 370 84 HOH HOH A . B 2 HOH 80 371 85 HOH HOH A . B 2 HOH 81 372 86 HOH HOH A . B 2 HOH 82 373 87 HOH HOH A . B 2 HOH 83 374 88 HOH HOH A . B 2 HOH 84 375 89 HOH HOH A . B 2 HOH 85 376 90 HOH HOH A . B 2 HOH 86 377 91 HOH HOH A . B 2 HOH 87 378 92 HOH HOH A . B 2 HOH 88 379 93 HOH HOH A . B 2 HOH 89 380 94 HOH HOH A . B 2 HOH 90 381 95 HOH HOH A . B 2 HOH 91 382 96 HOH HOH A . B 2 HOH 92 383 97 HOH HOH A . B 2 HOH 93 384 98 HOH HOH A . B 2 HOH 94 385 99 HOH HOH A . B 2 HOH 95 386 100 HOH HOH A . B 2 HOH 96 387 101 HOH HOH A . B 2 HOH 97 388 102 HOH HOH A . B 2 HOH 98 389 103 HOH HOH A . B 2 HOH 99 390 104 HOH HOH A . B 2 HOH 100 391 105 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 12390 ? 1 MORE -51 ? 1 'SSA (A^2)' 55160 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 -z,-x,y 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 10_555 -y,z,-x 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 4 'crystal symmetry operation' 13_544 y+1/2,x-1/2,-z-1/2 0.0000000000 1.0000000000 0.0000000000 60.7860000000 1.0000000000 0.0000000000 0.0000000000 -60.7860000000 0.0000000000 0.0000000000 -1.0000000000 -60.7860000000 5 'crystal symmetry operation' 19_544 -x+1/2,-z-1/2,-y-1/2 -1.0000000000 0.0000000000 0.0000000000 60.7860000000 0.0000000000 0.0000000000 -1.0000000000 -60.7860000000 0.0000000000 -1.0000000000 0.0000000000 -60.7860000000 6 'crystal symmetry operation' 22_544 z+1/2,-y-1/2,x-1/2 0.0000000000 0.0000000000 1.0000000000 60.7860000000 0.0000000000 -1.0000000000 0.0000000000 -60.7860000000 1.0000000000 0.0000000000 0.0000000000 -60.7860000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 380 ? B HOH . 2 1 A HOH 387 ? B HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 BSS 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 CCP4 phasing '(MOLREP)' ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 358 ? ? O A HOH 381 ? ? 2.19 2 1 O A HOH 357 ? ? O A HOH 381 ? ? 2.19 3 1 NH2 A ARG 111 ? ? OE1 A GLN 257 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 351 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 351 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 22_544 _pdbx_validate_symm_contact.dist 2.18 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 96 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -39.63 _pdbx_validate_torsion.psi 131.22 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 52 ? OG ? A SER 51 OG 2 1 Y 1 A ARG 55 ? CG ? A ARG 54 CG 3 1 Y 1 A ARG 55 ? CD ? A ARG 54 CD 4 1 Y 1 A ARG 55 ? NE ? A ARG 54 NE 5 1 Y 1 A ARG 55 ? CZ ? A ARG 54 CZ 6 1 Y 1 A ARG 55 ? NH1 ? A ARG 54 NH1 7 1 Y 1 A ARG 55 ? NH2 ? A ARG 54 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 56 ? A ALA 55 2 1 Y 1 A SER 57 ? A SER 56 3 1 Y 1 A ARG 58 ? A ARG 57 4 1 Y 1 A ARG 59 ? A ARG 58 5 1 Y 1 A ARG 60 ? A ARG 59 6 1 Y 1 A GLY 61 ? A GLY 60 7 1 Y 1 A ARG 62 ? A ARG 61 8 1 Y 1 A GLY 63 ? A GLY 62 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 PRO N N N N 259 PRO CA C N S 260 PRO C C N N 261 PRO O O N N 262 PRO CB C N N 263 PRO CG C N N 264 PRO CD C N N 265 PRO OXT O N N 266 PRO H H N N 267 PRO HA H N N 268 PRO HB2 H N N 269 PRO HB3 H N N 270 PRO HG2 H N N 271 PRO HG3 H N N 272 PRO HD2 H N N 273 PRO HD3 H N N 274 PRO HXT H N N 275 SER N N N N 276 SER CA C N S 277 SER C C N N 278 SER O O N N 279 SER CB C N N 280 SER OG O N N 281 SER OXT O N N 282 SER H H N N 283 SER H2 H N N 284 SER HA H N N 285 SER HB2 H N N 286 SER HB3 H N N 287 SER HG H N N 288 SER HXT H N N 289 THR N N N N 290 THR CA C N S 291 THR C C N N 292 THR O O N N 293 THR CB C N R 294 THR OG1 O N N 295 THR CG2 C N N 296 THR OXT O N N 297 THR H H N N 298 THR H2 H N N 299 THR HA H N N 300 THR HB H N N 301 THR HG1 H N N 302 THR HG21 H N N 303 THR HG22 H N N 304 THR HG23 H N N 305 THR HXT H N N 306 TRP N N N N 307 TRP CA C N S 308 TRP C C N N 309 TRP O O N N 310 TRP CB C N N 311 TRP CG C Y N 312 TRP CD1 C Y N 313 TRP CD2 C Y N 314 TRP NE1 N Y N 315 TRP CE2 C Y N 316 TRP CE3 C Y N 317 TRP CZ2 C Y N 318 TRP CZ3 C Y N 319 TRP CH2 C Y N 320 TRP OXT O N N 321 TRP H H N N 322 TRP H2 H N N 323 TRP HA H N N 324 TRP HB2 H N N 325 TRP HB3 H N N 326 TRP HD1 H N N 327 TRP HE1 H N N 328 TRP HE3 H N N 329 TRP HZ2 H N N 330 TRP HZ3 H N N 331 TRP HH2 H N N 332 TRP HXT H N N 333 TYR N N N N 334 TYR CA C N S 335 TYR C C N N 336 TYR O O N N 337 TYR CB C N N 338 TYR CG C Y N 339 TYR CD1 C Y N 340 TYR CD2 C Y N 341 TYR CE1 C Y N 342 TYR CE2 C Y N 343 TYR CZ C Y N 344 TYR OH O N N 345 TYR OXT O N N 346 TYR H H N N 347 TYR H2 H N N 348 TYR HA H N N 349 TYR HB2 H N N 350 TYR HB3 H N N 351 TYR HD1 H N N 352 TYR HD2 H N N 353 TYR HE1 H N N 354 TYR HE2 H N N 355 TYR HH H N N 356 TYR HXT H N N 357 VAL N N N N 358 VAL CA C N S 359 VAL C C N N 360 VAL O O N N 361 VAL CB C N N 362 VAL CG1 C N N 363 VAL CG2 C N N 364 VAL OXT O N N 365 VAL H H N N 366 VAL H2 H N N 367 VAL HA H N N 368 VAL HB H N N 369 VAL HG11 H N N 370 VAL HG12 H N N 371 VAL HG13 H N N 372 VAL HG21 H N N 373 VAL HG22 H N N 374 VAL HG23 H N N 375 VAL HXT H N N 376 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TRP N CA sing N N 293 TRP N H sing N N 294 TRP N H2 sing N N 295 TRP CA C sing N N 296 TRP CA CB sing N N 297 TRP CA HA sing N N 298 TRP C O doub N N 299 TRP C OXT sing N N 300 TRP CB CG sing N N 301 TRP CB HB2 sing N N 302 TRP CB HB3 sing N N 303 TRP CG CD1 doub Y N 304 TRP CG CD2 sing Y N 305 TRP CD1 NE1 sing Y N 306 TRP CD1 HD1 sing N N 307 TRP CD2 CE2 doub Y N 308 TRP CD2 CE3 sing Y N 309 TRP NE1 CE2 sing Y N 310 TRP NE1 HE1 sing N N 311 TRP CE2 CZ2 sing Y N 312 TRP CE3 CZ3 doub Y N 313 TRP CE3 HE3 sing N N 314 TRP CZ2 CH2 doub Y N 315 TRP CZ2 HZ2 sing N N 316 TRP CZ3 CH2 sing Y N 317 TRP CZ3 HZ3 sing N N 318 TRP CH2 HH2 sing N N 319 TRP OXT HXT sing N N 320 TYR N CA sing N N 321 TYR N H sing N N 322 TYR N H2 sing N N 323 TYR CA C sing N N 324 TYR CA CB sing N N 325 TYR CA HA sing N N 326 TYR C O doub N N 327 TYR C OXT sing N N 328 TYR CB CG sing N N 329 TYR CB HB2 sing N N 330 TYR CB HB3 sing N N 331 TYR CG CD1 doub Y N 332 TYR CG CD2 sing Y N 333 TYR CD1 CE1 sing Y N 334 TYR CD1 HD1 sing N N 335 TYR CD2 CE2 doub Y N 336 TYR CD2 HD2 sing N N 337 TYR CE1 CZ doub Y N 338 TYR CE1 HE1 sing N N 339 TYR CE2 CZ sing Y N 340 TYR CE2 HE2 sing N N 341 TYR CZ OH sing N N 342 TYR OH HH sing N N 343 TYR OXT HXT sing N N 344 VAL N CA sing N N 345 VAL N H sing N N 346 VAL N H2 sing N N 347 VAL CA C sing N N 348 VAL CA CB sing N N 349 VAL CA HA sing N N 350 VAL C O doub N N 351 VAL C OXT sing N N 352 VAL CB CG1 sing N N 353 VAL CB CG2 sing N N 354 VAL CB HB sing N N 355 VAL CG1 HG11 sing N N 356 VAL CG1 HG12 sing N N 357 VAL CG1 HG13 sing N N 358 VAL CG2 HG21 sing N N 359 VAL CG2 HG22 sing N N 360 VAL CG2 HG23 sing N N 361 VAL OXT HXT sing N N 362 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5CEV _pdbx_initial_refinement_model.details ? #