HEADER OXIDOREDUCTASE 10-MAR-07 2EHZ TITLE ANAEROBIC CRYSTAL STRUCTURE ANALYSIS OF 1,2-DIHYDROXYNAPHTHALENE TITLE 2 DIOXYGENASE FROM PSEUDOMONAS SP. STRAIN C18 COMPLEXED WITH 4- TITLE 3 METHYLCATECHOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1,2-DIHYDROXYNAPHTHALENE DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.13.11.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 69011; SOURCE 4 STRAIN: C18; SOURCE 5 GENE: DOXG; SOURCE 6 EXPRESSION_SYSTEM: PSEUDOMONAS PUTIDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 303; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: KT2442; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHMPVDG KEYWDS EXTRADIOL DIOXYGENASE, PROTEIN SUBSTRATE COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.B.NEAU,M.S.KELKER,C.L.COLBERT,J.T.BOLIN REVDAT 4 25-OCT-23 2EHZ 1 REMARK LINK REVDAT 3 13-JUL-11 2EHZ 1 VERSN REVDAT 2 24-FEB-09 2EHZ 1 VERSN REVDAT 1 19-FEB-08 2EHZ 0 JRNL AUTH D.B.NEAU,M.S.KELKER,H.MAAROUFI,C.L.COLBERT,L.D.ELTIS, JRNL AUTH 2 J.T.BOLIN JRNL TITL STRUCTURAL EXPLANATION FOR SUCCESS AND FAILURE IN THE JRNL TITL 2 ENZYMATIC RING-CLEAVAGE OF 3,4 DIHYDROXYBIPHENYL AND RELATED JRNL TITL 3 PCB METABOLITES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 79701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4201 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4598 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 227 REMARK 3 BIN FREE R VALUE : 0.2370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2369 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.141 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2476 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3350 ; 1.119 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ; 6.067 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;31.404 ;23.644 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 387 ;12.025 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;19.505 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 337 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1945 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1078 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1642 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 224 ; 0.102 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.157 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1543 ; 0.610 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2362 ; 0.935 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1106 ; 1.311 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 988 ; 1.895 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5270 37.0600 16.0550 REMARK 3 T TENSOR REMARK 3 T11: 0.0526 T22: -0.0016 REMARK 3 T33: 0.0430 T12: 0.0009 REMARK 3 T13: -0.0226 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 0.6970 L22: 0.5578 REMARK 3 L33: 0.7988 L12: 0.3997 REMARK 3 L13: 0.0025 L23: -0.0079 REMARK 3 S TENSOR REMARK 3 S11: -0.0261 S12: -0.0670 S13: 0.1338 REMARK 3 S21: 0.0247 S22: -0.0156 S23: -0.0140 REMARK 3 S31: -0.1515 S32: -0.0460 S33: 0.0417 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9950 27.8120 24.9640 REMARK 3 T TENSOR REMARK 3 T11: 0.0420 T22: 0.0334 REMARK 3 T33: 0.0130 T12: -0.0118 REMARK 3 T13: -0.0165 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 0.4704 L22: 0.2288 REMARK 3 L33: 0.5520 L12: -0.0337 REMARK 3 L13: 0.1510 L23: -0.0649 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: -0.0899 S13: 0.0547 REMARK 3 S21: 0.0468 S22: -0.0084 S23: -0.0153 REMARK 3 S31: -0.0482 S32: -0.0646 S33: 0.0045 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9580 23.4060 13.9430 REMARK 3 T TENSOR REMARK 3 T11: 0.0305 T22: 0.0213 REMARK 3 T33: 0.0452 T12: -0.0191 REMARK 3 T13: -0.0238 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.3030 L22: 0.5132 REMARK 3 L33: 0.4150 L12: -0.2228 REMARK 3 L13: 0.0634 L23: -0.0898 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: -0.0011 S13: 0.0509 REMARK 3 S21: 0.0187 S22: -0.0233 S23: -0.1089 REMARK 3 S31: -0.0131 S32: 0.0619 S33: 0.0181 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 291 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6570 29.2160 14.1840 REMARK 3 T TENSOR REMARK 3 T11: 0.1733 T22: 0.1750 REMARK 3 T33: 0.1980 T12: -0.0961 REMARK 3 T13: -0.0361 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 0.2620 L22: 1.5538 REMARK 3 L33: 0.5734 L12: -0.6381 REMARK 3 L13: 0.3876 L23: -0.9439 REMARK 3 S TENSOR REMARK 3 S11: -0.0537 S12: -0.3548 S13: 0.0381 REMARK 3 S21: 0.2505 S22: -0.2730 S23: -0.5134 REMARK 3 S31: 0.0672 S32: 0.2346 S33: 0.3267 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2EHZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000026688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79701 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 86.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1HAN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M NACL, 0.1M MGCL2, 0.1M HEPES, REMARK 280 ANAEROBIC CRYSTALLIZATION, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 58.91000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 58.91000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 60.58000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 58.91000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 58.91000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 60.58000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 58.91000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 58.91000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 60.58000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 58.91000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 58.91000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 60.58000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 58.91000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.91000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 60.58000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 58.91000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 58.91000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 60.58000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 58.91000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 58.91000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 60.58000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 58.91000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 58.91000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 60.58000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 34120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 82510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -235.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 4 N CB CG CD OE1 NE2 REMARK 480 LYS A 41 CG CD CE NZ REMARK 480 LYS A 91 CG CD CE NZ REMARK 480 ASP A 96 OD2 REMARK 480 LYS A 97 CG CD CE NZ REMARK 480 GLN A 101 OE1 NE2 REMARK 480 GLU A 162 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 41 CB LYS A 41 CG -0.258 REMARK 500 GLN A 101 CD GLN A 101 OE1 -0.299 REMARK 500 GLN A 101 CD GLN A 101 NE2 0.186 REMARK 500 GLU A 162 CD GLU A 162 OE1 0.120 REMARK 500 GLU A 162 CD GLU A 162 OE2 -0.257 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 96 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 GLN A 101 CG - CD - OE1 ANGL. DEV. = 12.4 DEGREES REMARK 500 GLN A 101 CG - CD - NE2 ANGL. DEV. = -20.1 DEGREES REMARK 500 GLU A 162 OE1 - CD - OE2 ANGL. DEV. = 10.2 DEGREES REMARK 500 GLU A 162 CG - CD - OE1 ANGL. DEV. = -16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 49 -155.73 -170.75 REMARK 500 ASN A 60 52.74 38.66 REMARK 500 ASP A 128 78.83 -102.42 REMARK 500 LYS A 142 -156.70 -149.55 REMARK 500 THR A 145 -110.47 -132.14 REMARK 500 ASN A 196 -164.14 -169.13 REMARK 500 ARG A 270 46.22 73.69 REMARK 500 PHE A 286 174.99 176.26 REMARK 500 GLU A 291 -83.96 -117.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 399 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 152 NE2 REMARK 620 2 HIS A 215 NE2 102.6 REMARK 620 3 GLU A 266 OE1 100.4 88.3 REMARK 620 4 MCT A1600 O3 141.3 83.7 118.1 REMARK 620 5 MCT A1600 O4 82.4 154.2 116.0 77.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MCT A 1600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MCT A 1601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MCT A 1602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MCT A 1603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MCT A 1604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MCT A 1605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EI0 RELATED DB: PDB REMARK 900 RELATED ID: 2EI1 RELATED DB: PDB REMARK 900 RELATED ID: 2EI2 RELATED DB: PDB REMARK 900 RELATED ID: 2EI3 RELATED DB: PDB DBREF 2EHZ A 1 302 UNP P0A108 NAHC_PSEU8 1 302 SEQRES 1 A 302 MET SER LYS GLN ALA ALA VAL ILE GLU LEU GLY TYR MET SEQRES 2 A 302 GLY ILE SER VAL LYS ASP PRO ASP ALA TRP LYS SER PHE SEQRES 3 A 302 ALA THR ASP MET LEU GLY LEU GLN VAL LEU ASP GLU GLY SEQRES 4 A 302 GLU LYS ASP ARG PHE TYR LEU ARG MET ASP TYR TRP HIS SEQRES 5 A 302 HIS ARG ILE VAL VAL HIS HIS ASN GLY GLN ASP ASP LEU SEQRES 6 A 302 GLU TYR LEU GLY TRP ARG VAL ALA GLY LYS PRO GLU PHE SEQRES 7 A 302 GLU ALA LEU GLY GLN LYS LEU ILE ASP ALA GLY TYR LYS SEQRES 8 A 302 ILE ARG ILE CYS ASP LYS VAL GLU ALA GLN GLU ARG MET SEQRES 9 A 302 VAL LEU GLY LEU MET LYS THR GLU ASP PRO GLY GLY ASN SEQRES 10 A 302 PRO THR GLU ILE PHE TRP GLY PRO ARG ILE ASP MET SER SEQRES 11 A 302 ASN PRO PHE HIS PRO GLY ARG PRO LEU HIS GLY LYS PHE SEQRES 12 A 302 VAL THR GLY ASP GLN GLY LEU GLY HIS CYS ILE VAL ARG SEQRES 13 A 302 GLN THR ASP VAL ALA GLU ALA HIS LYS PHE TYR SER LEU SEQRES 14 A 302 LEU GLY PHE ARG GLY ASP VAL GLU TYR ARG ILE PRO LEU SEQRES 15 A 302 PRO ASN GLY MET THR ALA GLU LEU SER PHE MET HIS CYS SEQRES 16 A 302 ASN ALA ARG ASP HIS SER ILE ALA PHE GLY ALA MET PRO SEQRES 17 A 302 ALA ALA LYS ARG LEU ASN HIS LEU MET LEU GLU TYR THR SEQRES 18 A 302 HIS MET GLU ASP LEU GLY TYR THR HIS GLN GLN PHE VAL SEQRES 19 A 302 LYS ASN GLU ILE ASP ILE ALA LEU GLN LEU GLY ILE HIS SEQRES 20 A 302 ALA ASN ASP LYS ALA LEU THR PHE TYR GLY ALA THR PRO SEQRES 21 A 302 SER GLY TRP LEU ILE GLU PRO GLY TRP ARG GLY ALA THR SEQRES 22 A 302 ALA ILE ASP GLU ALA GLU TYR TYR VAL GLY ASP ILE PHE SEQRES 23 A 302 GLY HIS GLY VAL GLU ALA THR GLY TYR GLY LEU ASP VAL SEQRES 24 A 302 LYS LEU SER HET FE2 A 399 1 HET MG A 398 1 HET MCT A1600 9 HET MCT A1601 9 HET MCT A1602 9 HET MCT A1603 9 HET MCT A1604 9 HET MCT A1605 9 HET EDO A 901 4 HETNAM FE2 FE (II) ION HETNAM MG MAGNESIUM ION HETNAM MCT 4-METHYLCATECHOL HETNAM EDO 1,2-ETHANEDIOL HETSYN MCT 4-METHYL-1,2-BENZENEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 FE2 FE 2+ FORMUL 3 MG MG 2+ FORMUL 4 MCT 6(C7 H8 O2) FORMUL 10 EDO C2 H6 O2 FORMUL 11 HOH *311(H2 O) HELIX 1 1 ASP A 19 MET A 30 1 12 HELIX 2 2 GLY A 74 ALA A 88 1 15 HELIX 3 3 ASP A 96 MET A 104 1 9 HELIX 4 4 THR A 145 GLY A 149 5 5 HELIX 5 5 ASP A 159 LEU A 170 1 12 HELIX 6 6 HIS A 222 ASN A 236 1 15 SHEET 1 A 8 GLN A 34 LEU A 36 0 SHEET 2 A 8 ARG A 43 ARG A 47 -1 O TYR A 45 N LEU A 36 SHEET 3 A 8 ILE A 55 HIS A 58 -1 O VAL A 57 N PHE A 44 SHEET 4 A 8 VAL A 7 SER A 16 1 N ILE A 15 O HIS A 58 SHEET 5 A 8 ASP A 64 VAL A 72 -1 O ARG A 71 N ILE A 8 SHEET 6 A 8 PRO A 118 PRO A 125 1 O GLU A 120 N TRP A 70 SHEET 7 A 8 VAL A 105 GLU A 112 -1 N THR A 111 O THR A 119 SHEET 8 A 8 ARG A 93 ILE A 94 -1 N ARG A 93 O LYS A 110 SHEET 1 B 9 VAL A 176 PRO A 181 0 SHEET 2 B 9 THR A 187 MET A 193 -1 O ALA A 188 N ILE A 180 SHEET 3 B 9 ILE A 202 PHE A 204 -1 O PHE A 204 N SER A 191 SHEET 4 B 9 HIS A 152 VAL A 155 1 N VAL A 155 O ALA A 203 SHEET 5 B 9 LEU A 213 TYR A 220 -1 O MET A 217 N HIS A 152 SHEET 6 B 9 LEU A 264 TRP A 269 1 O GLU A 266 N LEU A 216 SHEET 7 B 9 LEU A 253 ALA A 258 -1 N GLY A 257 O ILE A 265 SHEET 8 B 9 ILE A 240 ILE A 246 -1 N LEU A 242 O TYR A 256 SHEET 9 B 9 PHE A 286 GLY A 287 -1 O PHE A 286 N ILE A 246 LINK NE2 HIS A 152 FE FE2 A 399 1555 1555 2.18 LINK NE2 HIS A 215 FE FE2 A 399 1555 1555 2.19 LINK OE1 GLU A 266 FE FE2 A 399 1555 1555 2.04 LINK FE FE2 A 399 O3 MCT A1600 1555 1555 2.09 LINK FE FE2 A 399 O4 MCT A1600 1555 1555 2.23 SITE 1 AC1 5 HIS A 152 HIS A 215 TYR A 256 GLU A 266 SITE 2 AC1 5 MCT A1600 SITE 1 AC2 6 GLU A 177 HOH A1607 HOH A1608 HOH A1609 SITE 2 AC2 6 HOH A1610 HOH A1611 SITE 1 AC3 10 HIS A 152 TYR A 178 PHE A 192 HIS A 200 SITE 2 AC3 10 HIS A 215 HIS A 247 ASN A 249 TYR A 256 SITE 3 AC3 10 GLU A 266 FE2 A 399 SITE 1 AC4 7 ILE A 154 VAL A 155 ARG A 156 PHE A 204 SITE 2 AC4 7 GLY A 205 ASN A 214 HOH A1658 SITE 1 AC5 8 MET A 223 GLY A 227 HIS A 230 GLN A 231 SITE 2 AC5 8 LEU A 244 GLY A 245 LEU A 253 PHE A 286 SITE 1 AC6 7 SER A 16 ARG A 43 HIS A 58 TYR A 67 SITE 2 AC6 7 GLU A 102 ARG A 103 HOH A1790 SITE 1 AC7 7 HIS A 194 ASN A 196 ALA A 197 ALA A 274 SITE 2 AC7 7 ASP A 276 HOH A1837 HOH A1894 SITE 1 AC8 6 SER A 16 GLN A 62 LEU A 65 GLU A 66 SITE 2 AC8 6 ARG A 212 HOH A1794 SITE 1 AC9 7 TRP A 51 HIS A 52 HIS A 53 ARG A 103 SITE 2 AC9 7 MET A 104 PRO A 125 ARG A 126 CRYST1 117.820 117.820 121.160 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008488 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008488 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008254 0.00000