HEADER OXIDOREDUCTASE 10-MAR-07 2EI2 TITLE CRYSTAL STRUCTURE ANALYSIS OF THE 1,2-DIHYDROXYNAPHTHALENE DIOXYGENASE TITLE 2 FROM PSEUDOMONAS SP. STAIN C18 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1,2-DIHYDROXYNAPHTHALENE DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.13.11.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 69011; SOURCE 4 STRAIN: C18; SOURCE 5 GENE: DOXG; SOURCE 6 EXPRESSION_SYSTEM: PSEUDOMONAS PUTIDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 303; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: KT2442; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHMPVDG KEYWDS EXTRADIOL DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.B.NEAU,M.S.KELKER,C.L.COLBERT,J.T.BOLIN REVDAT 4 25-OCT-23 2EI2 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2EI2 1 VERSN REVDAT 2 24-FEB-09 2EI2 1 VERSN REVDAT 1 19-FEB-08 2EI2 0 JRNL AUTH D.B.NEAU,M.S.KELKER,H.MAAROUFI,C.L.COLBERT,L.D.ELTIS, JRNL AUTH 2 J.T.BOLIN JRNL TITL STRUCTURAL EXPLANATION FOR SUCCESS AND FAILURE IN THE JRNL TITL 2 ENZYMATIC RING-CLEAVAGE OF 3,4 DIHYDROXYBIPHENYL AND RELATED JRNL TITL 3 PCB METABOLITES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 3 NUMBER OF REFLECTIONS : 39685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2048 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2392 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 267 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.064 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2430 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3288 ; 1.202 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ; 5.861 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;33.306 ;23.644 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 386 ;11.940 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.574 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 338 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1891 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1006 ; 0.206 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1619 ; 0.317 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 374 ; 0.159 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.175 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.202 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1515 ; 0.799 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2355 ; 1.099 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1052 ; 1.836 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 933 ; 2.620 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5271 37.0598 16.0554 REMARK 3 T TENSOR REMARK 3 T11: 0.1331 T22: 0.0096 REMARK 3 T33: 0.1228 T12: -0.0154 REMARK 3 T13: -0.0493 T23: -0.0592 REMARK 3 L TENSOR REMARK 3 L11: 1.1371 L22: 0.8637 REMARK 3 L33: 1.7447 L12: 0.2539 REMARK 3 L13: 0.0539 L23: 0.1125 REMARK 3 S TENSOR REMARK 3 S11: -0.0363 S12: -0.0829 S13: 0.3134 REMARK 3 S21: 0.0501 S22: -0.0325 S23: -0.0060 REMARK 3 S31: -0.3944 S32: -0.0353 S33: 0.0688 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9953 27.8121 24.9641 REMARK 3 T TENSOR REMARK 3 T11: 0.1077 T22: 0.0519 REMARK 3 T33: 0.0608 T12: -0.0235 REMARK 3 T13: -0.0413 T23: -0.0644 REMARK 3 L TENSOR REMARK 3 L11: 0.8562 L22: 0.5737 REMARK 3 L33: 1.0125 L12: -0.0968 REMARK 3 L13: 0.1256 L23: -0.1613 REMARK 3 S TENSOR REMARK 3 S11: -0.0319 S12: -0.1862 S13: 0.1358 REMARK 3 S21: 0.1507 S22: -0.0083 S23: -0.0385 REMARK 3 S31: -0.1724 S32: -0.0617 S33: 0.0402 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9583 23.4063 13.9435 REMARK 3 T TENSOR REMARK 3 T11: 0.0597 T22: 0.0533 REMARK 3 T33: 0.0897 T12: -0.0644 REMARK 3 T13: -0.0528 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.8465 L22: 0.8009 REMARK 3 L33: 0.9629 L12: -0.1790 REMARK 3 L13: 0.0282 L23: -0.1022 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: -0.0726 S13: 0.1121 REMARK 3 S21: 0.0664 S22: -0.0370 S23: -0.1883 REMARK 3 S31: -0.1652 S32: 0.1868 S33: 0.0375 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 291 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6575 29.2159 14.1842 REMARK 3 T TENSOR REMARK 3 T11: 0.2494 T22: 0.2885 REMARK 3 T33: 0.2831 T12: -0.1482 REMARK 3 T13: -0.1130 T23: -0.1363 REMARK 3 L TENSOR REMARK 3 L11: 6.9566 L22: 9.7331 REMARK 3 L33: 3.2473 L12: -5.0006 REMARK 3 L13: 3.2688 L23: -5.5909 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: -0.3148 S13: 0.6819 REMARK 3 S21: 0.6808 S22: -0.0596 S23: -0.6640 REMARK 3 S31: -0.2538 S32: 0.1195 S33: 0.0869 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2EI2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000026691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46344 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 48.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.64600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1HAN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M NACL, 0.1M MGCL2, 0.1M HEPES, REMARK 280 NAEROBIC CRYSTALLIZATION, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 59.19500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 59.19500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 60.33000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 59.19500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 59.19500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 60.33000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 59.19500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 59.19500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 60.33000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 59.19500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 59.19500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 60.33000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 59.19500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.19500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 60.33000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 59.19500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 59.19500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 60.33000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 59.19500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 59.19500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 60.33000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 59.19500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 59.19500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 60.33000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 26890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 83140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -294.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 41 CG CD CE NZ REMARK 480 ASN A 60 ND2 REMARK 480 LYS A 91 CD CE NZ REMARK 480 LYS A 97 CD CE NZ REMARK 480 GLN A 101 OE1 NE2 REMARK 480 ASP A 147 OD1 OD2 REMARK 480 GLU A 162 OE1 OE2 REMARK 480 MET A 186 CB CG SD CE REMARK 480 LYS A 300 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 979 O HOH A 1084 5555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 162 CD GLU A 162 OE1 -0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 49 -155.06 -169.76 REMARK 500 ASP A 128 79.75 -100.21 REMARK 500 LYS A 142 -158.92 -147.91 REMARK 500 THR A 145 -110.86 -132.19 REMARK 500 ASN A 196 -163.96 -166.76 REMARK 500 GLU A 291 -85.78 -118.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 399 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 152 NE2 REMARK 620 2 HIS A 215 NE2 102.9 REMARK 620 3 GLU A 266 OE1 104.9 85.6 REMARK 620 4 HOH A 903 O 92.6 163.9 86.3 REMARK 620 5 HOH A 904 O 88.7 93.7 166.2 91.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EHZ RELATED DB: PDB REMARK 900 RELATED ID: 2EI0 RELATED DB: PDB REMARK 900 RELATED ID: 2EI1 RELATED DB: PDB REMARK 900 RELATED ID: 2EI3 RELATED DB: PDB DBREF 2EI2 A 1 302 UNP P0A108 NAHC_PSEU8 1 302 SEQADV 2EI2 ASN A 4 UNP P0A108 GLN 4 CONFLICT SEQRES 1 A 302 MET SER LYS ASN ALA ALA VAL ILE GLU LEU GLY TYR MET SEQRES 2 A 302 GLY ILE SER VAL LYS ASP PRO ASP ALA TRP LYS SER PHE SEQRES 3 A 302 ALA THR ASP MET LEU GLY LEU GLN VAL LEU ASP GLU GLY SEQRES 4 A 302 GLU LYS ASP ARG PHE TYR LEU ARG MET ASP TYR TRP HIS SEQRES 5 A 302 HIS ARG ILE VAL VAL HIS HIS ASN GLY GLN ASP ASP LEU SEQRES 6 A 302 GLU TYR LEU GLY TRP ARG VAL ALA GLY LYS PRO GLU PHE SEQRES 7 A 302 GLU ALA LEU GLY GLN LYS LEU ILE ASP ALA GLY TYR LYS SEQRES 8 A 302 ILE ARG ILE CYS ASP LYS VAL GLU ALA GLN GLU ARG MET SEQRES 9 A 302 VAL LEU GLY LEU MET LYS THR GLU ASP PRO GLY GLY ASN SEQRES 10 A 302 PRO THR GLU ILE PHE TRP GLY PRO ARG ILE ASP MET SER SEQRES 11 A 302 ASN PRO PHE HIS PRO GLY ARG PRO LEU HIS GLY LYS PHE SEQRES 12 A 302 VAL THR GLY ASP GLN GLY LEU GLY HIS CYS ILE VAL ARG SEQRES 13 A 302 GLN THR ASP VAL ALA GLU ALA HIS LYS PHE TYR SER LEU SEQRES 14 A 302 LEU GLY PHE ARG GLY ASP VAL GLU TYR ARG ILE PRO LEU SEQRES 15 A 302 PRO ASN GLY MET THR ALA GLU LEU SER PHE MET HIS CYS SEQRES 16 A 302 ASN ALA ARG ASP HIS SER ILE ALA PHE GLY ALA MET PRO SEQRES 17 A 302 ALA ALA LYS ARG LEU ASN HIS LEU MET LEU GLU TYR THR SEQRES 18 A 302 HIS MET GLU ASP LEU GLY TYR THR HIS GLN GLN PHE VAL SEQRES 19 A 302 LYS ASN GLU ILE ASP ILE ALA LEU GLN LEU GLY ILE HIS SEQRES 20 A 302 ALA ASN ASP LYS ALA LEU THR PHE TYR GLY ALA THR PRO SEQRES 21 A 302 SER GLY TRP LEU ILE GLU PRO GLY TRP ARG GLY ALA THR SEQRES 22 A 302 ALA ILE ASP GLU ALA GLU TYR TYR VAL GLY ASP ILE PHE SEQRES 23 A 302 GLY HIS GLY VAL GLU ALA THR GLY TYR GLY LEU ASP VAL SEQRES 24 A 302 LYS LEU SER HET MG A 398 1 HET FE2 A 399 1 HET GOL A 901 6 HET GOL A 902 6 HETNAM MG MAGNESIUM ION HETNAM FE2 FE (II) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG MG 2+ FORMUL 3 FE2 FE 2+ FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *267(H2 O) HELIX 1 1 ASP A 19 MET A 30 1 12 HELIX 2 2 GLY A 74 ALA A 88 1 15 HELIX 3 3 ASP A 96 MET A 104 1 9 HELIX 4 4 THR A 145 GLY A 149 5 5 HELIX 5 5 ASP A 159 LEU A 170 1 12 HELIX 6 6 HIS A 222 ASN A 236 1 15 SHEET 1 A 8 GLN A 34 LEU A 36 0 SHEET 2 A 8 ARG A 43 ARG A 47 -1 O TYR A 45 N LEU A 36 SHEET 3 A 8 ILE A 55 HIS A 58 -1 O VAL A 57 N PHE A 44 SHEET 4 A 8 GLU A 9 SER A 16 1 N ILE A 15 O HIS A 58 SHEET 5 A 8 ASP A 64 ARG A 71 -1 O GLU A 66 N GLY A 14 SHEET 6 A 8 PRO A 118 PRO A 125 1 O GLU A 120 N TRP A 70 SHEET 7 A 8 VAL A 105 GLU A 112 -1 N THR A 111 O THR A 119 SHEET 8 A 8 ARG A 93 ILE A 94 -1 N ARG A 93 O LYS A 110 SHEET 1 B 9 ARG A 173 PRO A 181 0 SHEET 2 B 9 THR A 187 HIS A 194 -1 O ALA A 188 N ILE A 180 SHEET 3 B 9 ILE A 202 PHE A 204 -1 O ILE A 202 N MET A 193 SHEET 4 B 9 HIS A 152 VAL A 155 1 N VAL A 155 O ALA A 203 SHEET 5 B 9 LEU A 213 TYR A 220 -1 O MET A 217 N HIS A 152 SHEET 6 B 9 LEU A 264 TRP A 269 1 O GLY A 268 N TYR A 220 SHEET 7 B 9 LEU A 253 ALA A 258 -1 N GLY A 257 O ILE A 265 SHEET 8 B 9 ILE A 240 ILE A 246 -1 N GLY A 245 O THR A 254 SHEET 9 B 9 PHE A 286 GLY A 287 -1 O PHE A 286 N ILE A 246 LINK NE2 HIS A 152 FE FE2 A 399 1555 1555 2.20 LINK NE2 HIS A 215 FE FE2 A 399 1555 1555 2.19 LINK OE1 GLU A 266 FE FE2 A 399 1555 1555 2.04 LINK FE FE2 A 399 O HOH A 903 1555 1555 2.21 LINK FE FE2 A 399 O HOH A 904 1555 1555 2.05 SITE 1 AC1 6 GLU A 177 HOH A 905 HOH A 906 HOH A 907 SITE 2 AC1 6 HOH A 908 HOH A 932 SITE 1 AC2 6 HIS A 152 HIS A 215 TYR A 256 GLU A 266 SITE 2 AC2 6 HOH A 903 HOH A 904 SITE 1 AC3 8 TYR A 12 TRP A 51 HIS A 52 HIS A 53 SITE 2 AC3 8 ARG A 103 MET A 104 PRO A 125 ARG A 126 SITE 1 AC4 6 PHE A 192 HIS A 247 TYR A 256 LEU A 297 SITE 2 AC4 6 HOH A 904 HOH A1143 CRYST1 118.390 118.390 120.660 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008447 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008288 0.00000