HEADER OXIDOREDUCTASE 20-MAR-07 2EJV TITLE CRYSTAL STRUCTURE OF THREONINE 3-DEHYDROGENASE COMPLEXED WITH NAD+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-THREONINE 3-DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.103; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS NAD-DEPENDENT, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.OMI,T.YAO,M.GOTO,I.MIYAHARA,K.HIROTSU REVDAT 4 25-OCT-23 2EJV 1 REMARK LINK REVDAT 3 13-JUL-11 2EJV 1 VERSN REVDAT 2 24-FEB-09 2EJV 1 VERSN REVDAT 1 25-MAR-08 2EJV 0 JRNL AUTH R.OMI,T.YAO,M.GOTO,I.MIYAHARA,K.HIROTSU JRNL TITL CRYSTAL STRUCTURE OF THREONINE 3-DEHYDROGENASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2267658.720 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 48074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4849 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.71 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7099 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 784 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5129 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.39000 REMARK 3 B22 (A**2) : 2.39000 REMARK 3 B33 (A**2) : -4.77000 REMARK 3 B12 (A**2) : 4.44000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.31 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.39 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.920 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.080 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.750 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 30.950; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 28.180; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 39.78 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESOLUTION-DEPENDENT WEIGHTING SCHEME REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2EJV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000026753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48510 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2DQ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M SODIUM ACETATE, 0.1M MES PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.53100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 179.06200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 134.29650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 223.82750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.76550 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.53100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 179.06200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 223.82750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 134.29650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.76550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -232.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 135.75800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 134.29650 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 SER A 331 OG REMARK 470 GLN A 333 CG CD OE1 NE2 REMARK 470 GLU B 217 CG CD OE1 OE2 REMARK 470 ARG B 225 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 333 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 9 67.60 -59.74 REMARK 500 ARG A 54 -37.12 -155.09 REMARK 500 PRO A 79 -160.66 -74.15 REMARK 500 ALA A 95 35.67 -157.70 REMARK 500 ASN A 103 60.91 -102.89 REMARK 500 VAL A 115 -33.31 -137.14 REMARK 500 SER A 230 -91.63 -158.32 REMARK 500 LEU A 276 -69.82 -124.16 REMARK 500 LEU A 291 99.15 -60.10 REMARK 500 TRP A 292 -43.15 99.34 REMARK 500 VAL A 335 -85.99 -99.94 REMARK 500 PRO B 9 77.46 -63.13 REMARK 500 PRO B 25 128.65 -39.59 REMARK 500 PRO B 79 -160.69 -71.11 REMARK 500 HIS B 94 16.74 58.74 REMARK 500 ALA B 95 37.95 -143.92 REMARK 500 VAL B 115 -55.64 -131.51 REMARK 500 ALA B 173 31.94 -98.96 REMARK 500 SER B 230 -95.95 -167.28 REMARK 500 PRO B 267 155.77 -49.83 REMARK 500 LEU B 276 -64.77 -129.43 REMARK 500 TRP B 292 -40.61 91.62 REMARK 500 GLN B 333 43.22 -100.21 REMARK 500 VAL B 335 -90.53 -109.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 38 SG REMARK 620 2 HIS A 63 NE2 85.6 REMARK 620 3 GLU A 64 OE2 101.0 126.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 93 SG REMARK 620 2 CYS A 96 SG 95.1 REMARK 620 3 CYS A 99 SG 129.5 112.5 REMARK 620 4 CYS A 107 SG 94.6 107.1 114.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 38 SG REMARK 620 2 HIS B 63 NE2 108.5 REMARK 620 3 GLU B 64 OE2 107.1 120.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 93 SG REMARK 620 2 CYS B 96 SG 108.2 REMARK 620 3 CYS B 99 SG 123.0 102.8 REMARK 620 4 CYS B 107 SG 102.3 115.7 105.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 2350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 1350 DBREF 2EJV A 1 343 UNP Q5SKS4 TDH_THET8 1 343 DBREF 2EJV B 1 343 UNP Q5SKS4 TDH_THET8 1 343 SEQRES 1 A 343 MET ARG ALA LEU ALA LYS LEU ALA PRO GLU GLU GLY LEU SEQRES 2 A 343 THR LEU VAL ASP ARG PRO VAL PRO GLU PRO GLY PRO GLY SEQRES 3 A 343 GLU ILE LEU VAL ARG VAL GLU ALA ALA SER ILE CYS GLY SEQRES 4 A 343 THR ASP LEU HIS ILE TRP LYS TRP ASP ALA TRP ALA ARG SEQRES 5 A 343 GLY ARG ILE ARG PRO PRO LEU VAL THR GLY HIS GLU PHE SEQRES 6 A 343 SER GLY VAL VAL GLU ALA VAL GLY PRO GLY VAL ARG ARG SEQRES 7 A 343 PRO GLN VAL GLY ASP HIS VAL SER LEU GLU SER HIS ILE SEQRES 8 A 343 VAL CYS HIS ALA CYS PRO ALA CYS ARG THR GLY ASN TYR SEQRES 9 A 343 HIS VAL CYS LEU ASN THR GLN ILE LEU GLY VAL ASP ARG SEQRES 10 A 343 ASP GLY GLY PHE ALA GLU TYR VAL VAL VAL PRO ALA GLU SEQRES 11 A 343 ASN ALA TRP VAL ASN PRO LYS ASP LEU PRO PHE GLU VAL SEQRES 12 A 343 ALA ALA ILE LEU GLU PRO PHE GLY ASN ALA VAL HIS THR SEQRES 13 A 343 VAL TYR ALA GLY SER GLY VAL SER GLY LYS SER VAL LEU SEQRES 14 A 343 ILE THR GLY ALA GLY PRO ILE GLY LEU MET ALA ALA MET SEQRES 15 A 343 VAL VAL ARG ALA SER GLY ALA GLY PRO ILE LEU VAL SER SEQRES 16 A 343 ASP PRO ASN PRO TYR ARG LEU ALA PHE ALA ARG PRO TYR SEQRES 17 A 343 ALA ASP ARG LEU VAL ASN PRO LEU GLU GLU ASP LEU LEU SEQRES 18 A 343 GLU VAL VAL ARG ARG VAL THR GLY SER GLY VAL GLU VAL SEQRES 19 A 343 LEU LEU GLU PHE SER GLY ASN GLU ALA ALA ILE HIS GLN SEQRES 20 A 343 GLY LEU MET ALA LEU ILE PRO GLY GLY GLU ALA ARG ILE SEQRES 21 A 343 LEU GLY ILE PRO SER ASP PRO ILE ARG PHE ASP LEU ALA SEQRES 22 A 343 GLY GLU LEU VAL MET ARG GLY ILE THR ALA PHE GLY ILE SEQRES 23 A 343 ALA GLY ARG ARG LEU TRP GLN THR TRP MET GLN GLY THR SEQRES 24 A 343 ALA LEU VAL TYR SER GLY ARG VAL ASP LEU SER PRO LEU SEQRES 25 A 343 LEU THR HIS ARG LEU PRO LEU SER ARG TYR ARG GLU ALA SEQRES 26 A 343 PHE GLY LEU LEU ALA SER GLY GLN ALA VAL LYS VAL ILE SEQRES 27 A 343 LEU ASP PRO LYS ALA SEQRES 1 B 343 MET ARG ALA LEU ALA LYS LEU ALA PRO GLU GLU GLY LEU SEQRES 2 B 343 THR LEU VAL ASP ARG PRO VAL PRO GLU PRO GLY PRO GLY SEQRES 3 B 343 GLU ILE LEU VAL ARG VAL GLU ALA ALA SER ILE CYS GLY SEQRES 4 B 343 THR ASP LEU HIS ILE TRP LYS TRP ASP ALA TRP ALA ARG SEQRES 5 B 343 GLY ARG ILE ARG PRO PRO LEU VAL THR GLY HIS GLU PHE SEQRES 6 B 343 SER GLY VAL VAL GLU ALA VAL GLY PRO GLY VAL ARG ARG SEQRES 7 B 343 PRO GLN VAL GLY ASP HIS VAL SER LEU GLU SER HIS ILE SEQRES 8 B 343 VAL CYS HIS ALA CYS PRO ALA CYS ARG THR GLY ASN TYR SEQRES 9 B 343 HIS VAL CYS LEU ASN THR GLN ILE LEU GLY VAL ASP ARG SEQRES 10 B 343 ASP GLY GLY PHE ALA GLU TYR VAL VAL VAL PRO ALA GLU SEQRES 11 B 343 ASN ALA TRP VAL ASN PRO LYS ASP LEU PRO PHE GLU VAL SEQRES 12 B 343 ALA ALA ILE LEU GLU PRO PHE GLY ASN ALA VAL HIS THR SEQRES 13 B 343 VAL TYR ALA GLY SER GLY VAL SER GLY LYS SER VAL LEU SEQRES 14 B 343 ILE THR GLY ALA GLY PRO ILE GLY LEU MET ALA ALA MET SEQRES 15 B 343 VAL VAL ARG ALA SER GLY ALA GLY PRO ILE LEU VAL SER SEQRES 16 B 343 ASP PRO ASN PRO TYR ARG LEU ALA PHE ALA ARG PRO TYR SEQRES 17 B 343 ALA ASP ARG LEU VAL ASN PRO LEU GLU GLU ASP LEU LEU SEQRES 18 B 343 GLU VAL VAL ARG ARG VAL THR GLY SER GLY VAL GLU VAL SEQRES 19 B 343 LEU LEU GLU PHE SER GLY ASN GLU ALA ALA ILE HIS GLN SEQRES 20 B 343 GLY LEU MET ALA LEU ILE PRO GLY GLY GLU ALA ARG ILE SEQRES 21 B 343 LEU GLY ILE PRO SER ASP PRO ILE ARG PHE ASP LEU ALA SEQRES 22 B 343 GLY GLU LEU VAL MET ARG GLY ILE THR ALA PHE GLY ILE SEQRES 23 B 343 ALA GLY ARG ARG LEU TRP GLN THR TRP MET GLN GLY THR SEQRES 24 B 343 ALA LEU VAL TYR SER GLY ARG VAL ASP LEU SER PRO LEU SEQRES 25 B 343 LEU THR HIS ARG LEU PRO LEU SER ARG TYR ARG GLU ALA SEQRES 26 B 343 PHE GLY LEU LEU ALA SER GLY GLN ALA VAL LYS VAL ILE SEQRES 27 B 343 LEU ASP PRO LYS ALA HET ZN A 501 1 HET ZN A 502 1 HET NAD A1350 44 HET ZN B 501 1 HET ZN B 502 1 HET NAD B2350 44 HETNAM ZN ZINC ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 ZN 4(ZN 2+) FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 9 HOH *180(H2 O) HELIX 1 1 CYS A 38 TRP A 47 1 10 HELIX 2 2 ASP A 48 GLY A 53 1 6 HELIX 3 3 CYS A 96 THR A 101 1 6 HELIX 4 4 ASN A 103 CYS A 107 5 5 HELIX 5 5 PRO A 140 ILE A 146 1 7 HELIX 6 6 ILE A 146 ALA A 159 1 14 HELIX 7 7 GLY A 174 SER A 187 1 14 HELIX 8 8 ASN A 198 ALA A 203 1 6 HELIX 9 9 PHE A 204 ARG A 206 5 3 HELIX 10 10 ASP A 219 GLY A 229 1 11 HELIX 11 11 ASN A 241 ALA A 251 1 11 HELIX 12 12 ASP A 271 LEU A 276 1 6 HELIX 13 13 TRP A 292 SER A 304 1 13 HELIX 14 14 LEU A 309 PRO A 311 5 3 HELIX 15 15 ARG A 321 GLY A 332 1 12 HELIX 16 16 CYS B 38 TRP B 47 1 10 HELIX 17 17 ASP B 48 ILE B 55 1 8 HELIX 18 18 CYS B 96 GLY B 102 1 7 HELIX 19 19 ASN B 103 CYS B 107 5 5 HELIX 20 20 PRO B 140 ILE B 146 1 7 HELIX 21 21 ILE B 146 ALA B 159 1 14 HELIX 22 22 GLY B 174 SER B 187 1 14 HELIX 23 23 ASN B 198 ALA B 205 1 8 HELIX 24 24 ASP B 219 GLY B 229 1 11 HELIX 25 25 ASN B 241 ALA B 251 1 11 HELIX 26 26 ASP B 271 LEU B 276 1 6 HELIX 27 27 TRP B 292 SER B 304 1 13 HELIX 28 28 LEU B 309 PRO B 311 5 3 HELIX 29 29 ARG B 321 GLY B 332 1 12 SHEET 1 A 3 THR A 14 ASP A 17 0 SHEET 2 A 3 ARG A 2 LYS A 6 -1 N ALA A 5 O THR A 14 SHEET 3 A 3 LEU A 59 VAL A 60 -1 O LEU A 59 N LYS A 6 SHEET 1 B 5 TYR A 124 PRO A 128 0 SHEET 2 B 5 GLU A 27 SER A 36 -1 N VAL A 30 O VAL A 125 SHEET 3 B 5 GLU A 64 VAL A 72 -1 O GLU A 64 N SER A 36 SHEET 4 B 5 HIS A 84 LEU A 87 -1 O VAL A 85 N GLY A 67 SHEET 5 B 5 ALA A 132 ASN A 135 -1 O ASN A 135 N HIS A 84 SHEET 1 C 4 TYR A 124 PRO A 128 0 SHEET 2 C 4 GLU A 27 SER A 36 -1 N VAL A 30 O VAL A 125 SHEET 3 C 4 LYS A 336 ASP A 340 -1 O LEU A 339 N ALA A 35 SHEET 4 C 4 LEU A 313 PRO A 318 1 N HIS A 315 O ILE A 338 SHEET 1 D 2 HIS A 90 ILE A 91 0 SHEET 2 D 2 GLN A 111 ILE A 112 -1 O GLN A 111 N ILE A 91 SHEET 1 E12 ARG A 211 VAL A 213 0 SHEET 2 E12 ILE A 192 SER A 195 1 N VAL A 194 O ARG A 211 SHEET 3 E12 VAL A 168 THR A 171 1 N VAL A 168 O LEU A 193 SHEET 4 E12 VAL A 232 GLU A 237 1 O LEU A 236 N LEU A 169 SHEET 5 E12 LEU A 252 ILE A 260 1 O ARG A 259 N LEU A 235 SHEET 6 E12 THR A 282 GLY A 285 1 O PHE A 284 N ALA A 258 SHEET 7 E12 THR B 282 GLY B 285 -1 O ALA B 283 N ALA A 283 SHEET 8 E12 LEU B 252 ILE B 260 1 N ALA B 258 O PHE B 284 SHEET 9 E12 VAL B 232 GLU B 237 1 N LEU B 235 O ARG B 259 SHEET 10 E12 VAL B 168 THR B 171 1 N LEU B 169 O LEU B 236 SHEET 11 E12 ILE B 192 SER B 195 1 O SER B 195 N ILE B 170 SHEET 12 E12 ARG B 211 VAL B 213 1 O VAL B 213 N VAL B 194 SHEET 1 F 2 ILE A 268 PHE A 270 0 SHEET 2 F 2 ILE B 268 PHE B 270 -1 O ILE B 268 N PHE A 270 SHEET 1 G 3 THR B 14 ASP B 17 0 SHEET 2 G 3 ARG B 2 LYS B 6 -1 N ALA B 5 O THR B 14 SHEET 3 G 3 LEU B 59 VAL B 60 -1 O LEU B 59 N LYS B 6 SHEET 1 H 5 TYR B 124 PRO B 128 0 SHEET 2 H 5 GLU B 27 SER B 36 -1 N VAL B 30 O VAL B 125 SHEET 3 H 5 GLU B 64 VAL B 72 -1 O ALA B 71 N LEU B 29 SHEET 4 H 5 HIS B 84 LEU B 87 -1 O VAL B 85 N GLY B 67 SHEET 5 H 5 ALA B 132 ASN B 135 -1 O TRP B 133 N SER B 86 SHEET 1 I 4 TYR B 124 PRO B 128 0 SHEET 2 I 4 GLU B 27 SER B 36 -1 N VAL B 30 O VAL B 125 SHEET 3 I 4 LYS B 336 ASP B 340 -1 O LEU B 339 N ALA B 35 SHEET 4 I 4 LEU B 313 PRO B 318 1 N HIS B 315 O ILE B 338 SHEET 1 J 2 HIS B 90 ILE B 91 0 SHEET 2 J 2 GLN B 111 ILE B 112 -1 O GLN B 111 N ILE B 91 LINK SG CYS A 38 ZN ZN A 501 1555 1555 2.49 LINK NE2 HIS A 63 ZN ZN A 501 1555 1555 2.28 LINK OE2 GLU A 64 ZN ZN A 501 1555 1555 2.24 LINK SG CYS A 93 ZN ZN A 502 1555 1555 2.48 LINK SG CYS A 96 ZN ZN A 502 1555 1555 2.38 LINK SG CYS A 99 ZN ZN A 502 1555 1555 2.36 LINK SG CYS A 107 ZN ZN A 502 1555 1555 2.58 LINK SG CYS B 38 ZN ZN B 501 1555 1555 2.58 LINK NE2 HIS B 63 ZN ZN B 501 1555 1555 2.25 LINK OE2 GLU B 64 ZN ZN B 501 1555 1555 2.64 LINK SG CYS B 93 ZN ZN B 502 1555 1555 2.41 LINK SG CYS B 96 ZN ZN B 502 1555 1555 2.46 LINK SG CYS B 99 ZN ZN B 502 1555 1555 2.42 LINK SG CYS B 107 ZN ZN B 502 1555 1555 2.27 CISPEP 1 PRO A 57 PRO A 58 0 -0.02 CISPEP 2 ARG A 78 PRO A 79 0 0.00 CISPEP 3 GLY A 190 PRO A 191 0 -0.27 CISPEP 4 PRO B 57 PRO B 58 0 0.10 CISPEP 5 ARG B 78 PRO B 79 0 -0.13 CISPEP 6 GLY B 190 PRO B 191 0 -0.19 SITE 1 AC1 3 CYS A 38 HIS A 63 GLU A 64 SITE 1 AC2 5 CYS A 93 HIS A 94 CYS A 96 CYS A 99 SITE 2 AC2 5 CYS A 107 SITE 1 AC3 3 CYS B 38 HIS B 63 GLU B 64 SITE 1 AC4 4 CYS B 93 CYS B 96 CYS B 99 CYS B 107 SITE 1 AC5 19 ASN B 152 GLY B 172 GLY B 174 PRO B 175 SITE 2 AC5 19 ILE B 176 SER B 195 ASP B 196 PRO B 197 SITE 3 AC5 19 ARG B 201 PHE B 238 SER B 239 ASN B 241 SITE 4 AC5 19 ALA B 244 LEU B 261 ILE B 263 ILE B 286 SITE 5 AC5 19 ALA B 287 GLY B 288 HOH B2378 SITE 1 AC6 19 GLY A 172 GLY A 174 PRO A 175 ILE A 176 SITE 2 AC6 19 SER A 195 ASP A 196 PRO A 197 ARG A 201 SITE 3 AC6 19 PRO A 215 PHE A 238 SER A 239 ASN A 241 SITE 4 AC6 19 ALA A 244 LEU A 261 GLY A 262 ILE A 263 SITE 5 AC6 19 ILE A 286 ALA A 287 GLY A 288 CRYST1 135.758 135.758 268.593 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007366 0.004253 0.000000 0.00000 SCALE2 0.000000 0.008506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003723 0.00000