HEADER TRANSFERASE 29-MAR-07 2EOC TITLE SOLUTION STRUCTURE OF THE WGR DOMAIN FROM HUMAN POLY [ADP-RIBOSE] TITLE 2 POLYMERASE-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY [ADP-RIBOSE] POLYMERASE 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WGR DOMAIN; COMPND 5 SYNONYM: PARP-3, NAD+, ADP- RIBOSYLTRANSFERASE 3, POLY[ADP-RIBOSE] COMPND 6 SYNTHETASE 3, PADPRT-3, HPARP-3, IRT1; COMPND 7 EC: 2.4.2.30; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P060710-01; SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ANTI-PARALLEL BETA-SHEET, CELL CYCLE CONTROL, DNA DAMAGE, KEYWDS 2 TRANSCRIPTION, NAD+, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 3 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EOC 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EOC 1 VERSN REVDAT 1 01-APR-08 2EOC 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE WGR DOMAIN FROM HUMAN POLY JRNL TITL 2 [ADP-RIBOSE] POLYMERASE-3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EOC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000026906. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.21MM UNIFORMLY 13C, 15N REMARK 210 -LABELED PROTEIN; 20MM TRISHCL, REMARK 210 100MM NACL, 1MM DTT, 0.02% NAN3, REMARK 210 10% D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9822, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 35 -179.11 -174.28 REMARK 500 1 SER A 36 143.51 62.42 REMARK 500 1 SER A 38 140.62 -177.48 REMARK 500 1 SER A 39 100.61 53.08 REMARK 500 1 ALA A 41 173.59 52.51 REMARK 500 1 GLU A 64 -144.86 50.64 REMARK 500 1 ASN A 92 37.14 -99.89 REMARK 500 1 GLU A 139 35.39 -91.61 REMARK 500 1 HIS A 142 35.85 -98.77 REMARK 500 1 PHE A 143 107.32 -54.96 REMARK 500 1 LYS A 149 -177.36 -68.66 REMARK 500 1 VAL A 155 172.38 50.43 REMARK 500 2 SER A 36 -51.47 77.99 REMARK 500 2 SER A 38 94.40 49.04 REMARK 500 2 SER A 39 90.47 -66.37 REMARK 500 2 ASP A 49 142.03 -35.28 REMARK 500 2 GLU A 64 -146.00 55.02 REMARK 500 2 ASN A 92 45.08 -85.05 REMARK 500 2 ARG A 93 35.44 36.60 REMARK 500 2 LYS A 134 39.30 35.04 REMARK 500 2 VAL A 155 172.78 50.45 REMARK 500 3 SER A 35 -56.27 -149.49 REMARK 500 3 SER A 36 168.59 57.31 REMARK 500 3 VAL A 48 107.79 -43.58 REMARK 500 3 ASP A 49 142.51 -34.61 REMARK 500 3 THR A 60 104.72 -57.98 REMARK 500 3 GLU A 64 -146.24 41.40 REMARK 500 3 ASN A 92 49.07 -85.49 REMARK 500 3 ARG A 93 35.63 34.59 REMARK 500 3 LYS A 134 39.46 39.20 REMARK 500 3 GLU A 139 38.22 -92.37 REMARK 500 3 HIS A 142 34.62 -94.45 REMARK 500 3 VAL A 155 173.09 50.58 REMARK 500 4 SER A 35 133.29 -170.95 REMARK 500 4 SER A 36 -59.65 178.39 REMARK 500 4 ASP A 49 141.86 -36.18 REMARK 500 4 THR A 60 104.00 -59.47 REMARK 500 4 GLU A 64 -144.64 48.59 REMARK 500 4 ASP A 65 44.35 -105.67 REMARK 500 4 ASN A 92 49.95 -81.35 REMARK 500 4 ARG A 93 36.10 32.13 REMARK 500 4 GLN A 109 173.19 -59.25 REMARK 500 4 HIS A 142 50.12 -108.48 REMARK 500 4 VAL A 155 172.62 50.71 REMARK 500 5 SER A 38 42.27 -165.74 REMARK 500 5 ASP A 49 141.98 -34.98 REMARK 500 5 THR A 60 93.77 -66.68 REMARK 500 5 TYR A 63 99.17 -53.90 REMARK 500 5 GLU A 64 -145.15 72.48 REMARK 500 5 TYR A 83 117.81 -160.35 REMARK 500 REMARK 500 THIS ENTRY HAS 227 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003000050.1 RELATED DB: TARGETDB DBREF 2EOC A 41 157 UNP Q9Y6F1 PARP3_HUMAN 41 157 SEQADV 2EOC GLY A 34 UNP Q9Y6F1 EXPRESSION TAG SEQADV 2EOC SER A 35 UNP Q9Y6F1 EXPRESSION TAG SEQADV 2EOC SER A 36 UNP Q9Y6F1 EXPRESSION TAG SEQADV 2EOC GLY A 37 UNP Q9Y6F1 EXPRESSION TAG SEQADV 2EOC SER A 38 UNP Q9Y6F1 EXPRESSION TAG SEQADV 2EOC SER A 39 UNP Q9Y6F1 EXPRESSION TAG SEQADV 2EOC GLY A 40 UNP Q9Y6F1 EXPRESSION TAG SEQRES 1 A 124 GLY SER SER GLY SER SER GLY ALA GLU LYS ARG ILE ILE SEQRES 2 A 124 ARG VAL ASP PRO THR CYS PRO LEU SER SER ASN PRO GLY SEQRES 3 A 124 THR GLN VAL TYR GLU ASP TYR ASN CYS THR LEU ASN GLN SEQRES 4 A 124 THR ASN ILE GLU ASN ASN ASN ASN LYS PHE TYR ILE ILE SEQRES 5 A 124 GLN LEU LEU GLN ASP SER ASN ARG PHE PHE THR CYS TRP SEQRES 6 A 124 ASN ARG TRP GLY ARG VAL GLY GLU VAL GLY GLN SER LYS SEQRES 7 A 124 ILE ASN HIS PHE THR ARG LEU GLU ASP ALA LYS LYS ASP SEQRES 8 A 124 PHE GLU LYS LYS PHE ARG GLU LYS THR LYS ASN ASN TRP SEQRES 9 A 124 ALA GLU ARG ASP HIS PHE VAL SER HIS PRO GLY LYS TYR SEQRES 10 A 124 THR LEU ILE GLU VAL GLN ALA HELIX 1 1 ARG A 117 LYS A 134 1 18 HELIX 2 2 GLU A 139 PHE A 143 5 5 SHEET 1 A 5 LYS A 111 PHE A 115 0 SHEET 2 A 5 PHE A 95 ARG A 100 -1 N ASN A 99 O LYS A 111 SHEET 3 A 5 ASN A 79 GLN A 89 -1 N LEU A 88 O THR A 96 SHEET 4 A 5 GLN A 61 ASN A 74 -1 N GLN A 72 O LYS A 81 SHEET 5 A 5 THR A 151 ILE A 153 -1 O ILE A 153 N THR A 69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1