HEADER TRANSCRIPTION ACTIVATOR/DNA 24-OCT-05 2ER8 TITLE CRYSTAL STRUCTURE OF LEU3 DNA-BINDING DOMAIN COMPLEXED WITH A 12MER TITLE 2 DNA DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*CP*CP*GP*GP*TP*AP*CP*CP*GP*GP*G)-3'; COMPND 3 CHAIN: E, F, G, H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: REGULATORY PROTEIN LEU3; COMPND 7 CHAIN: A, B, C, D; COMPND 8 FRAGMENT: RESIDUES 32-103; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 5 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 6 ORGANISM_TAXID: 4932; SOURCE 7 GENE: LEU3 (32-103); SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PT7-7 KEYWDS ZN(2)CYS(6) BINUCLEAR CLUSTER MOTIF, TRANSCRIPTION ACTIVATOR-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.X.FITZGERALD,R.MARMORSTEIN REVDAT 4 14-FEB-24 2ER8 1 REMARK LINK REVDAT 3 24-FEB-09 2ER8 1 VERSN REVDAT 2 18-APR-06 2ER8 1 JRNL REVDAT 1 04-APR-06 2ER8 0 JRNL AUTH M.X.FITZGERALD,J.R.ROJAS,J.M.KIM,G.B.KOHLHAW,R.MARMORSTEIN JRNL TITL STRUCTURE OF A LEU3-DNA COMPLEX: RECOGNITION OF EVERTED CGG JRNL TITL 2 HALF-SITES BY A ZN2CYS6 BINUCLEAR CLUSTER PROTEIN. JRNL REF STRUCTURE V. 14 725 2006 JRNL REFN ISSN 0969-2126 JRNL PMID 16615914 JRNL DOI 10.1016/J.STR.2005.11.025 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 471523.930 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 31825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 3116 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4389 REMARK 3 BIN R VALUE (WORKING SET) : 0.4010 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 467 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2019 REMARK 3 NUCLEIC ACID ATOMS : 972 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.21000 REMARK 3 B22 (A**2) : 12.21000 REMARK 3 B33 (A**2) : -24.41000 REMARK 3 B12 (A**2) : 0.75000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM SIGMAA (A) : 0.62 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.63 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.270 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.790 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.460 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.350 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.780 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.27 REMARK 3 BSOL : 42.10 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2ER8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000035000. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-02 REMARK 200 TEMPERATURE (KELVIN) : 94 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2830, 1.2833, 1.2587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33071 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 40.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37400 REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 22% MPD, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.96667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 145.93333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.96667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 145.93333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.96667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 145.93333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 72.96667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 145.93333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 8 CHAIN(S). THE 4 BIOLOGICAL MOLECULES REMARK 300 CAN BE GENARATED THE FOLLOWING WAY: REMARK 300 1 - CHAIN A, E (RESIDUES 7-12) AND F(RESIDUES 13-18) REMARK 300 AND APPYING SYMMETRY 1-X+Y,Y,-Z TO CHAINS C, REMARK 300 G (RESIDUES7-12) AND H (RESIDUES 13-18). REMARK 300 2 - CHAIN B, E (RESIDUES 1-16) AND F (RESIDUES 19-24) REMARK 300 AND APPYING SYMMETRY 1-Y,1-X,1/3-Z TO CHAINS D, REMARK 300 G (RESIDUES 1-6) AND H (RESIDUES 19-24). REMARK 300 3 - CHAIN C, G (RESIDUES 7-12) AND H (RESIDUES 13-18) REMARK 300 AND APPYING SYMMETRY 1-X+Y,Y,-Z TO CHAINS A, REMARK 300 E (RESIDUES 7-12) AND F (RESIDUES 13-18). REMARK 300 4 - CHAIN D, G (RESIDUES 1-16) AND H (RESIDUES 19-24) REMARK 300 AND APPYING SYMMETRY 1-Y,1-X,1/3-Z TO CHAINS B, REMARK 300 E (RESIDUES 1-6) AND F (RESIDUES 19-24). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 100 REMARK 465 SER A 101 REMARK 465 ASP A 102 REMARK 465 GLU A 103 REMARK 465 LYS B 32 REMARK 465 THR B 100 REMARK 465 SER B 101 REMARK 465 ASP B 102 REMARK 465 GLU B 103 REMARK 465 LYS C 32 REMARK 465 THR C 97 REMARK 465 ASN C 98 REMARK 465 LEU C 99 REMARK 465 THR C 100 REMARK 465 SER C 101 REMARK 465 ASP C 102 REMARK 465 GLU C 103 REMARK 465 THR D 100 REMARK 465 SER D 101 REMARK 465 ASP D 102 REMARK 465 GLU D 103 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 ARG A 52 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 ASP A 72 CG OD1 OD2 REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 ARG A 88 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 ARG A 94 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 96 CG CD1 CD2 REMARK 470 THR A 97 OG1 CG2 REMARK 470 ASN A 98 CG OD1 ND2 REMARK 470 LEU A 99 CG CD1 CD2 REMARK 470 ARG B 33 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 34 CG CD CE NZ REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 ARG B 71 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 72 CG OD1 OD2 REMARK 470 GLU B 83 CG CD OE1 OE2 REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 ARG C 33 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 50 CG ND1 CD2 CE1 NE2 REMARK 470 GLU C 51 CG CD OE1 OE2 REMARK 470 ARG C 52 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 55 CG CD OE1 OE2 REMARK 470 LYS C 62 CG CD CE NZ REMARK 470 ASN C 64 CG OD1 ND2 REMARK 470 LYS C 70 CG CD CE NZ REMARK 470 ARG C 88 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 90 CG CD CE NZ REMARK 470 GLU C 91 CG CD OE1 OE2 REMARK 470 ARG C 94 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 96 CG CD1 CD2 REMARK 470 LYS D 32 CG CD CE NZ REMARK 470 ARG D 33 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 51 CG CD OE1 OE2 REMARK 470 ARG D 52 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 62 CG CD CE NZ REMARK 470 LYS D 90 CG CD CE NZ REMARK 470 GLU D 91 CG CD OE1 OE2 REMARK 470 ARG D 94 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 98 CG OD1 ND2 REMARK 470 LEU D 99 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C5' DT F 18 O HOH F 27 2.03 REMARK 500 O5' DC F 13 O HOH F 25 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS D 37 CB CYS D 37 SG -0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG G 11 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 51 26.03 -67.09 REMARK 500 ALA A 53 -161.72 50.01 REMARK 500 PRO A 56 153.06 -47.39 REMARK 500 ARG A 75 179.63 -52.59 REMARK 500 ALA B 53 -154.56 52.99 REMARK 500 LYS B 62 -5.93 -58.43 REMARK 500 LYS B 70 95.01 -173.73 REMARK 500 PHE B 73 135.36 -37.90 REMARK 500 HIS C 50 20.17 -65.77 REMARK 500 GLU C 51 -51.69 -139.92 REMARK 500 ARG C 52 18.10 -64.12 REMARK 500 ALA C 53 -152.46 43.88 REMARK 500 PRO C 56 151.36 -38.20 REMARK 500 LYS C 62 20.79 -60.84 REMARK 500 LYS C 63 13.45 -153.57 REMARK 500 ASN C 64 76.46 33.14 REMARK 500 LYS C 78 -80.56 -42.61 REMARK 500 THR C 95 22.20 -75.65 REMARK 500 ASP D 48 31.17 -98.05 REMARK 500 HIS D 50 -39.05 -36.57 REMARK 500 ARG D 52 4.59 -61.83 REMARK 500 ALA D 53 -154.96 52.88 REMARK 500 ARG D 71 -18.15 -47.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG H 23 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 37 SG REMARK 620 2 CYS A 57 SG 101.5 REMARK 620 3 CYS A 60 SG 104.6 99.0 REMARK 620 4 CYS A 67 SG 111.8 106.6 129.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 105 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 37 SG REMARK 620 2 CYS A 40 SG 95.1 REMARK 620 3 CYS A 47 SG 106.7 118.0 REMARK 620 4 CYS A 57 SG 95.7 102.0 131.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 37 SG REMARK 620 2 CYS B 57 SG 111.4 REMARK 620 3 CYS B 60 SG 101.7 109.9 REMARK 620 4 CYS B 67 SG 105.9 110.2 117.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 105 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 37 SG REMARK 620 2 CYS B 40 SG 104.1 REMARK 620 3 CYS B 47 SG 110.2 110.0 REMARK 620 4 CYS B 57 SG 107.7 99.4 123.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 105 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 37 SG REMARK 620 2 CYS C 57 SG 107.4 REMARK 620 3 CYS C 60 SG 97.2 110.1 REMARK 620 4 CYS C 67 SG 116.4 111.9 112.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 106 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 37 SG REMARK 620 2 CYS C 40 SG 98.0 REMARK 620 3 CYS C 47 SG 111.4 115.4 REMARK 620 4 CYS C 57 SG 108.7 106.4 115.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 107 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 37 SG REMARK 620 2 CYS D 57 SG 102.3 REMARK 620 3 CYS D 60 SG 103.3 104.2 REMARK 620 4 CYS D 67 SG 107.6 116.8 120.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 108 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 37 SG REMARK 620 2 CYS D 40 SG 101.0 REMARK 620 3 CYS D 47 SG 98.0 113.2 REMARK 620 4 CYS D 57 SG 110.0 110.8 121.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 108 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ERE RELATED DB: PDB REMARK 900 RELATED ID: 2ERG RELATED DB: PDB DBREF 2ER8 A 32 103 UNP P08638 LEUR_YEAST 32 103 DBREF 2ER8 B 32 103 UNP P08638 LEUR_YEAST 32 103 DBREF 2ER8 C 32 103 UNP P08638 LEUR_YEAST 32 103 DBREF 2ER8 D 32 103 UNP P08638 LEUR_YEAST 32 103 DBREF 2ER8 E 1 12 PDB 2ER8 2ER8 1 12 DBREF 2ER8 F 13 24 PDB 2ER8 2ER8 13 24 DBREF 2ER8 G 1 12 PDB 2ER8 2ER8 1 12 DBREF 2ER8 H 13 24 PDB 2ER8 2ER8 13 24 SEQRES 1 E 12 DC DC DC DG DG DT DA DC DC DG DG DG SEQRES 1 F 12 DC DC DC DG DG DT DA DC DC DG DG DG SEQRES 1 G 12 DC DC DC DG DG DT DA DC DC DG DG DG SEQRES 1 H 12 DC DC DC DG DG DT DA DC DC DG DG DG SEQRES 1 A 72 LYS ARG LYS PHE ALA CYS VAL GLU CYS ARG GLN GLN LYS SEQRES 2 A 72 SER LYS CYS ASP ALA HIS GLU ARG ALA PRO GLU PRO CYS SEQRES 3 A 72 THR LYS CYS ALA LYS LYS ASN VAL PRO CYS ILE LEU LYS SEQRES 4 A 72 ARG ASP PHE ARG ARG THR TYR LYS ARG ALA ARG ASN GLU SEQRES 5 A 72 ALA ILE GLU LYS ARG PHE LYS GLU LEU THR ARG THR LEU SEQRES 6 A 72 THR ASN LEU THR SER ASP GLU SEQRES 1 B 72 LYS ARG LYS PHE ALA CYS VAL GLU CYS ARG GLN GLN LYS SEQRES 2 B 72 SER LYS CYS ASP ALA HIS GLU ARG ALA PRO GLU PRO CYS SEQRES 3 B 72 THR LYS CYS ALA LYS LYS ASN VAL PRO CYS ILE LEU LYS SEQRES 4 B 72 ARG ASP PHE ARG ARG THR TYR LYS ARG ALA ARG ASN GLU SEQRES 5 B 72 ALA ILE GLU LYS ARG PHE LYS GLU LEU THR ARG THR LEU SEQRES 6 B 72 THR ASN LEU THR SER ASP GLU SEQRES 1 C 72 LYS ARG LYS PHE ALA CYS VAL GLU CYS ARG GLN GLN LYS SEQRES 2 C 72 SER LYS CYS ASP ALA HIS GLU ARG ALA PRO GLU PRO CYS SEQRES 3 C 72 THR LYS CYS ALA LYS LYS ASN VAL PRO CYS ILE LEU LYS SEQRES 4 C 72 ARG ASP PHE ARG ARG THR TYR LYS ARG ALA ARG ASN GLU SEQRES 5 C 72 ALA ILE GLU LYS ARG PHE LYS GLU LEU THR ARG THR LEU SEQRES 6 C 72 THR ASN LEU THR SER ASP GLU SEQRES 1 D 72 LYS ARG LYS PHE ALA CYS VAL GLU CYS ARG GLN GLN LYS SEQRES 2 D 72 SER LYS CYS ASP ALA HIS GLU ARG ALA PRO GLU PRO CYS SEQRES 3 D 72 THR LYS CYS ALA LYS LYS ASN VAL PRO CYS ILE LEU LYS SEQRES 4 D 72 ARG ASP PHE ARG ARG THR TYR LYS ARG ALA ARG ASN GLU SEQRES 5 D 72 ALA ILE GLU LYS ARG PHE LYS GLU LEU THR ARG THR LEU SEQRES 6 D 72 THR ASN LEU THR SER ASP GLU HET ZN A 104 1 HET ZN A 105 1 HET ZN B 104 1 HET ZN B 105 1 HET ZN C 105 1 HET ZN C 106 1 HET ZN D 107 1 HET ZN D 108 1 HETNAM ZN ZINC ION FORMUL 9 ZN 8(ZN 2+) FORMUL 17 HOH *33(H2 O) HELIX 1 1 CYS A 37 GLN A 43 1 7 HELIX 2 2 ALA A 49 ALA A 53 5 5 HELIX 3 3 CYS A 57 LYS A 63 1 7 HELIX 4 4 TYR A 77 ASN A 98 1 22 HELIX 5 5 CYS B 37 GLN B 43 1 7 HELIX 6 6 ASP B 48 ALA B 53 1 6 HELIX 7 7 CYS B 57 LYS B 63 1 7 HELIX 8 8 TYR B 77 ASN B 98 1 22 HELIX 9 9 CYS C 37 GLN C 43 1 7 HELIX 10 10 CYS C 57 LYS C 62 1 6 HELIX 11 11 TYR C 77 THR C 95 1 19 HELIX 12 12 CYS D 37 GLN D 43 1 7 HELIX 13 13 ASP D 48 ALA D 53 1 6 HELIX 14 14 CYS D 57 ASN D 64 1 8 HELIX 15 15 TYR D 77 ASN D 98 1 22 LINK SG CYS A 37 ZN ZN A 104 1555 1555 2.38 LINK SG CYS A 37 ZN ZN A 105 1555 1555 2.57 LINK SG CYS A 40 ZN ZN A 105 1555 1555 2.41 LINK SG CYS A 47 ZN ZN A 105 1555 1555 2.48 LINK SG CYS A 57 ZN ZN A 104 1555 1555 2.35 LINK SG CYS A 57 ZN ZN A 105 1555 1555 2.37 LINK SG CYS A 60 ZN ZN A 104 1555 1555 2.12 LINK SG CYS A 67 ZN ZN A 104 1555 1555 2.28 LINK SG CYS B 37 ZN ZN B 104 1555 1555 2.44 LINK SG CYS B 37 ZN ZN B 105 1555 1555 2.56 LINK SG CYS B 40 ZN ZN B 105 1555 1555 2.39 LINK SG CYS B 47 ZN ZN B 105 1555 1555 2.18 LINK SG CYS B 57 ZN ZN B 104 1555 1555 2.44 LINK SG CYS B 57 ZN ZN B 105 1555 1555 2.43 LINK SG CYS B 60 ZN ZN B 104 1555 1555 2.24 LINK SG CYS B 67 ZN ZN B 104 1555 1555 2.33 LINK SG CYS C 37 ZN ZN C 105 1555 1555 2.69 LINK SG CYS C 37 ZN ZN C 106 1555 1555 2.55 LINK SG CYS C 40 ZN ZN C 106 1555 1555 2.28 LINK SG CYS C 47 ZN ZN C 106 1555 1555 2.33 LINK SG CYS C 57 ZN ZN C 105 1555 1555 2.38 LINK SG CYS C 57 ZN ZN C 106 1555 1555 2.48 LINK SG CYS C 60 ZN ZN C 105 1555 1555 2.24 LINK SG CYS C 67 ZN ZN C 105 1555 1555 2.54 LINK SG CYS D 37 ZN ZN D 107 1555 1555 2.59 LINK SG CYS D 37 ZN ZN D 108 1555 1555 2.53 LINK SG CYS D 40 ZN ZN D 108 1555 1555 2.25 LINK SG CYS D 47 ZN ZN D 108 1555 1555 2.31 LINK SG CYS D 57 ZN ZN D 107 1555 1555 2.65 LINK SG CYS D 57 ZN ZN D 108 1555 1555 2.45 LINK SG CYS D 60 ZN ZN D 107 1555 1555 2.26 LINK SG CYS D 67 ZN ZN D 107 1555 1555 2.38 SITE 1 AC1 5 CYS A 37 CYS A 57 CYS A 60 CYS A 67 SITE 2 AC1 5 ZN A 105 SITE 1 AC2 5 CYS A 37 CYS A 40 CYS A 47 CYS A 57 SITE 2 AC2 5 ZN A 104 SITE 1 AC3 5 CYS B 37 CYS B 57 CYS B 60 CYS B 67 SITE 2 AC3 5 ZN B 105 SITE 1 AC4 5 CYS B 37 CYS B 40 CYS B 47 CYS B 57 SITE 2 AC4 5 ZN B 104 SITE 1 AC5 5 CYS C 37 CYS C 57 CYS C 60 CYS C 67 SITE 2 AC5 5 ZN C 106 SITE 1 AC6 5 CYS C 37 CYS C 40 CYS C 47 CYS C 57 SITE 2 AC6 5 ZN C 105 SITE 1 AC7 5 CYS D 37 CYS D 57 CYS D 60 CYS D 67 SITE 2 AC7 5 ZN D 108 SITE 1 AC8 5 CYS D 37 CYS D 40 CYS D 47 CYS D 57 SITE 2 AC8 5 ZN D 107 CRYST1 107.500 107.500 218.900 90.00 90.00 120.00 P 64 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009302 0.005371 0.000000 0.00000 SCALE2 0.000000 0.010741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004568 0.00000