HEADER SIGNALING PROTEIN 25-OCT-05 2ERS TITLE SOLUTION STRUCTURE OF THE INTERLEUKIN-15 RECEPTOR SUSHI DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-15 RECEPTOR ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SUSHI DOMAIN OF THE INTERLEUKIN-15 RECEPTOR; COMPND 5 SYNONYM: IL-15RALPHA, IL-15RA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SG13009; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS SUSHI DOMAIN, SIGNALING PROTEIN EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR I.LORENZEN,A.J.DINGLEY,J.GROTZINGER REVDAT 5 09-MAR-22 2ERS 1 REMARK REVDAT 4 09-JUN-09 2ERS 1 REVDAT REVDAT 3 24-FEB-09 2ERS 1 VERSN REVDAT 2 06-JAN-09 2ERS 1 JRNL REVDAT 1 07-FEB-06 2ERS 0 JRNL AUTH I.LORENZEN,A.J.DINGLEY,Y.JACQUES,J.GROTZINGER JRNL TITL THE STRUCTURE OF THE INTERLEUKIN-15 ALPHA RECEPTOR AND ITS JRNL TITL 2 IMPLICATIONS FOR LIGAND BINDING. JRNL REF J.BIOL.CHEM. V. 281 6642 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16377614 JRNL DOI 10.1074/JBC.M513118200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5 REMARK 3 AUTHORS : GUENTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ERS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000035014. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 150MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM IL-15 RECEPTOR SUSHI DOMIAN REMARK 210 15N,13C; 20MM PHOSPHATE BUFFER; REMARK 210 150MM SODIUM CHLORIDE; 7% D2O; REMARK 210 PH = 7.4 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNCA; HC(CO)NH; REMARK 210 3D_15N_EDITED TOCSY A.O. REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 RES CSSEQI ATOMS REMARK 470 ASP A 96 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG CYS A 33 HG CYS A 75 0.40 REMARK 500 SG CYS A 33 HG CYS A 75 0.97 REMARK 500 HG1 THR A 69 H LYS A 92 1.03 REMARK 500 HA CYS A 59 HG CYS A 93 1.25 REMARK 500 HG CYS A 33 SG CYS A 75 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 52 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 38 -141.07 -153.84 REMARK 500 VAL A 39 -79.90 59.17 REMARK 500 GLU A 40 -75.85 103.44 REMARK 500 HIS A 41 48.60 -89.87 REMARK 500 TYR A 49 -166.65 45.92 REMARK 500 SER A 50 148.40 175.69 REMARK 500 CYS A 59 174.35 53.44 REMARK 500 SER A 61 89.91 -66.39 REMARK 500 PHE A 63 151.09 -49.32 REMARK 500 LYS A 66 154.48 -46.58 REMARK 500 SER A 71 66.39 -110.93 REMARK 500 ASN A 78 18.08 -67.90 REMARK 500 LYS A 79 21.67 46.85 REMARK 500 ALA A 80 -61.79 -150.27 REMARK 500 ASN A 82 6.94 49.16 REMARK 500 TRP A 86 67.84 -110.72 REMARK 500 THR A 87 -160.13 29.38 REMARK 500 LEU A 91 118.78 47.80 REMARK 500 ARG A 95 146.18 -38.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 41 0.09 SIDE CHAIN REMARK 500 TYR A 57 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CYS A 59 11.59 REMARK 500 REMARK 500 REMARK: NULL DBREF 2ERS A 31 96 UNP Q13261 I15RA_HUMAN 31 96 SEQRES 1 A 66 ILE THR CYS PRO PRO PRO MET SER VAL GLU HIS ALA ASP SEQRES 2 A 66 ILE TRP VAL LYS SER TYR SER LEU TYR SER ARG GLU ARG SEQRES 3 A 66 TYR ILE CYS ASN SER GLY PHE LYS ARG LYS ALA GLY THR SEQRES 4 A 66 SER SER LEU THR GLU CYS VAL LEU ASN LYS ALA THR ASN SEQRES 5 A 66 VAL ALA HIS TRP THR THR PRO SER LEU LYS CYS ILE ARG SEQRES 6 A 66 ASP SHEET 1 A 3 ARG A 54 ARG A 56 0 SHEET 2 A 3 LEU A 72 LEU A 77 -1 O THR A 73 N GLU A 55 SHEET 3 A 3 ALA A 84 TRP A 86 -1 O HIS A 85 N VAL A 76 SHEET 1 B 2 LYS A 64 ARG A 65 0 SHEET 2 B 2 CYS A 93 ILE A 94 -1 O ILE A 94 N LYS A 64 SSBOND 1 CYS A 33 CYS A 75 1555 1555 2.04 SSBOND 2 CYS A 59 CYS A 93 1555 1555 2.04 CISPEP 1 ARG A 95 ASP A 96 0 10.85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000