data_2ESI # _entry.id 2ESI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ESI pdb_00002esi 10.2210/pdb2esi/pdb NDB DR0021 ? ? RCSB RCSB035038 ? ? WWPDB D_1000035038 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-12-20 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ESI _pdbx_database_status.recvd_initial_deposition_date 2005-10-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1J7T 'Crystal structure of the Complex Between Paromomycin and the 16S-Rrna A-Site' unspecified PDB 2BEE 'Crystal structure of the Complex Between Paromomycin derivative JS4 and the 16S-Rrna A Site' unspecified PDB 2BE0 'Complex Between Paromomycin Derivative JS5-39 and the 16S-Rrna A-Site' unspecified PDB 2ESJ 'Crystal structure of the complex between Lividomycin A and the 16S-Rrna A Site' unspecified # _audit_author.name 'Westhof, E.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscoding ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 33 _citation.page_first 5677 _citation.page_last 5790 _citation.year 2005 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16214802 _citation.pdbx_database_id_DOI 10.1093/nar/gki862 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Francois, B.' 1 ? primary 'Russel, R.J.M.' 2 ? primary 'Murray, J.B.' 3 ? primary 'Aboul-ela, F.' 4 ? primary 'Masquida, B.' 5 ? primary 'Vicens, Q.' 6 ? primary 'Westhof, E.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'" 7355.409 2 ? ? ? 'bacterial A-Site' 2 non-polymer syn 'KANAMYCIN A' 484.499 3 ? ? ? ? 3 water nat water 18.015 34 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code UUGCGUCACACCGGUGAAGUCGC _entity_poly.pdbx_seq_one_letter_code_can UUGCGUCACACCGGUGAAGUCGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'KANAMYCIN A' KAN 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 G n 1 4 C n 1 5 G n 1 6 U n 1 7 C n 1 8 A n 1 9 C n 1 10 A n 1 11 C n 1 12 C n 1 13 G n 1 14 G n 1 15 U n 1 16 G n 1 17 A n 1 18 A n 1 19 G n 1 20 U n 1 21 C n 1 22 G n 1 23 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence contains the bacterial A-Site' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 KAN non-polymer . 'KANAMYCIN A' ? 'C18 H36 N4 O11' 484.499 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 0 0 U U A . n A 1 2 U 2 1 1 U U A . n A 1 3 G 3 2 2 G G A . n A 1 4 C 4 3 3 C C A . n A 1 5 G 5 4 4 G G A . n A 1 6 U 6 5 5 U U A . n A 1 7 C 7 6 6 C C A . n A 1 8 A 8 7 7 A A A . n A 1 9 C 9 8 8 C C A . n A 1 10 A 10 9 9 A A A . n A 1 11 C 11 10 10 C C A . n A 1 12 C 12 11 11 C C A . n A 1 13 G 13 12 12 G G A . n A 1 14 G 14 13 13 G G A . n A 1 15 U 15 14 14 U U A . n A 1 16 G 16 15 15 G G A . n A 1 17 A 17 16 16 A A A . n A 1 18 A 18 17 17 A A A . n A 1 19 G 19 18 18 G G A . n A 1 20 U 20 19 19 U U A . n A 1 21 C 21 20 20 C C A . n A 1 22 G 22 21 21 G G A . n A 1 23 C 23 22 22 C C A . n B 1 1 U 1 23 ? ? ? B . n B 1 2 U 2 24 ? ? ? B . n B 1 3 G 3 25 25 G G B . n B 1 4 C 4 26 26 C C B . n B 1 5 G 5 27 27 G G B . n B 1 6 U 6 28 28 U U B . n B 1 7 C 7 29 29 C C B . n B 1 8 A 8 30 30 A A B . n B 1 9 C 9 31 31 C C B . n B 1 10 A 10 32 32 A A B . n B 1 11 C 11 33 33 C C B . n B 1 12 C 12 34 34 C C B . n B 1 13 G 13 35 35 G G B . n B 1 14 G 14 36 36 G G B . n B 1 15 U 15 37 37 U U B . n B 1 16 G 16 38 38 G G B . n B 1 17 A 17 39 39 A A B . n B 1 18 A 18 40 40 A A B . n B 1 19 G 19 41 41 G G B . n B 1 20 U 20 42 42 U U B . n B 1 21 C 21 43 43 C C B . n B 1 22 G 22 44 44 G G B . n B 1 23 C 23 45 45 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 KAN 1 51 51 KAN KAN A . D 2 KAN 1 50 50 KAN KAN A . E 2 KAN 1 52 52 KAN KAN B . F 3 HOH 1 103 103 HOH HOH A . F 3 HOH 2 104 104 HOH HOH A . F 3 HOH 3 105 105 HOH HOH A . F 3 HOH 4 106 106 HOH HOH A . F 3 HOH 5 110 110 HOH HOH A . F 3 HOH 6 113 113 HOH HOH A . F 3 HOH 7 114 114 HOH HOH A . F 3 HOH 8 116 116 HOH HOH A . F 3 HOH 9 121 121 HOH HOH A . F 3 HOH 10 123 123 HOH HOH A . F 3 HOH 11 124 124 HOH HOH A . F 3 HOH 12 125 125 HOH HOH A . F 3 HOH 13 127 127 HOH HOH A . F 3 HOH 14 130 130 HOH HOH A . F 3 HOH 15 131 131 HOH HOH A . F 3 HOH 16 133 133 HOH HOH A . G 3 HOH 1 100 100 HOH HOH B . G 3 HOH 2 101 101 HOH HOH B . G 3 HOH 3 102 102 HOH HOH B . G 3 HOH 4 107 107 HOH HOH B . G 3 HOH 5 108 108 HOH HOH B . G 3 HOH 6 109 109 HOH HOH B . G 3 HOH 7 111 111 HOH HOH B . G 3 HOH 8 112 112 HOH HOH B . G 3 HOH 9 115 115 HOH HOH B . G 3 HOH 10 117 117 HOH HOH B . G 3 HOH 11 118 118 HOH HOH B . G 3 HOH 12 119 119 HOH HOH B . G 3 HOH 13 120 120 HOH HOH B . G 3 HOH 14 122 122 HOH HOH B . G 3 HOH 15 126 126 HOH HOH B . G 3 HOH 16 128 128 HOH HOH B . G 3 HOH 17 129 129 HOH HOH B . G 3 HOH 18 132 132 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B G 25 ? P ? B G 3 P 2 1 Y 1 B G 25 ? OP1 ? B G 3 OP1 3 1 Y 1 B G 25 ? OP2 ? B G 3 OP2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 CNS refinement 1.1 ? 4 HKL-2000 'data reduction' . ? 5 # _cell.entry_id 2ESI _cell.length_a 47.380 _cell.length_b 32.730 _cell.length_c 52.700 _cell.angle_alpha 90.00 _cell.angle_beta 107.38 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ESI _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2ESI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.65 _exptl_crystal.density_percent_sol 53.60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.4 _exptl_crystal_grow.pdbx_details 'MPD, NACL, MGSO4, GLYCEROL, NA CACODYLATE, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 310K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 NACL ? ? ? 1 3 1 MGSO4 ? ? ? 1 4 1 GLYCEROL ? ? ? 1 5 1 'NA CACODYLATE' ? ? ? 1 6 1 H2O ? ? ? 1 7 2 MPD ? ? ? 1 8 2 NACL ? ? ? 1 9 2 MGSO4 ? ? ? 1 10 2 'NA CACODYLATE' ? ? ? 1 11 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.936 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.936 # _reflns.entry_id 2ESI _reflns.observed_criterion_sigma_I 5 _reflns.observed_criterion_sigma_F 5 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.9 _reflns.number_obs 2454 _reflns.number_all 4500 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2ESI _refine.ls_number_reflns_obs 2454 _refine.ls_number_reflns_all 3223 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.0 _refine.ls_d_res_high 3.0 _refine.ls_percent_reflns_obs 76.1 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2015 _refine.ls_R_factor_R_free 0.2656 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 233 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ;G. PARKINSON, J. VOJTECHOVSKY, L. CLOWNEY, A.T. BRUNGER, H.M. BERMAN, NEW PARAMETERS FOR THE REFINEMENT OF NUCLEIC ACIDCONTAINING STRUCTURES, ACTA CRYST. D, 52,57-64 (1996) ; _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2ESI _refine_analyze.Luzzati_coordinate_error_obs 0.32 _refine_analyze.Luzzati_sigma_a_obs 0.52 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.42 _refine_analyze.Luzzati_sigma_a_free 0.53 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 932 _refine_hist.pdbx_number_atoms_ligand 99 _refine_hist.number_atoms_solvent 34 _refine_hist.number_atoms_total 1065 _refine_hist.d_res_high 3.0 _refine_hist.d_res_low 30.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.0067 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d 1.1613 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 11.257 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.472 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 2ESI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2ESI _struct.title 'Complex between Kanamycin A and the 16S-Rrna A Site.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ESI _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA-AMINOGLYCOSIDE INTERACTIONS, A SITE, UOU PAIRS, AA BULGES, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2ESI _struct_ref.pdbx_db_accession 2ESI _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2ESI A 1 ? 23 ? 2ESI 0 ? 22 ? 0 22 2 1 2ESI B 1 ? 23 ? 2ESI 23 ? 45 ? 23 45 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 23 N3 ? ? A G 2 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 23 O2 ? ? A G 2 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 23 N4 ? ? A G 2 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 22 N1 ? ? A C 3 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 22 O6 ? ? A C 3 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 22 N2 ? ? A C 3 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 21 N3 ? ? A G 4 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 21 O2 ? ? A G 4 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 21 N4 ? ? A G 4 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 6 O4 ? ? ? 1_555 B U 20 N3 ? ? A U 5 B U 42 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog11 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 6 B G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 6 B G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 6 B G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 16 N1 ? ? A C 8 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 16 O6 ? ? A C 8 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 16 N2 ? ? A C 8 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 15 N3 ? ? A A 9 B U 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 15 O4 ? ? A A 9 B U 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 14 N1 ? ? A C 10 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 14 O6 ? ? A C 10 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 14 N2 ? ? A C 10 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 13 N1 ? ? A C 11 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 13 O6 ? ? A C 11 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 13 N2 ? ? A C 11 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 12 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 12 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 12 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 13 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 13 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 13 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 15 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 14 B A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 15 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 14 B A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 15 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 15 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 15 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 18 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 18 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 18 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 20 N3 ? ? ? 1_555 B U 6 O4 ? ? A U 19 B U 28 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog40 hydrog ? ? A C 21 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 20 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 21 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 20 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 21 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 20 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 22 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 21 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 22 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 21 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 22 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 21 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 23 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 22 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 23 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 22 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 23 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 22 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A KAN 51 ? 16 'BINDING SITE FOR RESIDUE KAN A 51' AC2 Software A KAN 50 ? 11 'BINDING SITE FOR RESIDUE KAN A 50' AC3 Software B KAN 52 ? 11 'BINDING SITE FOR RESIDUE KAN B 52' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 U A 1 ? U A 0 . ? 1_555 ? 2 AC1 16 U A 2 ? U A 1 . ? 1_555 ? 3 AC1 16 G A 5 ? G A 4 . ? 1_555 ? 4 AC1 16 C A 7 ? C A 6 . ? 1_555 ? 5 AC1 16 A A 8 ? A A 7 . ? 1_555 ? 6 AC1 16 C A 9 ? C A 8 . ? 1_555 ? 7 AC1 16 HOH F . ? HOH A 103 . ? 1_555 ? 8 AC1 16 HOH F . ? HOH A 116 . ? 1_555 ? 9 AC1 16 HOH F . ? HOH A 124 . ? 1_555 ? 10 AC1 16 HOH F . ? HOH A 125 . ? 1_555 ? 11 AC1 16 G B 16 ? G B 38 . ? 1_555 ? 12 AC1 16 A B 17 ? A B 39 . ? 1_555 ? 13 AC1 16 A B 18 ? A B 40 . ? 1_555 ? 14 AC1 16 G B 19 ? G B 41 . ? 1_555 ? 15 AC1 16 U B 20 ? U B 42 . ? 1_555 ? 16 AC1 16 HOH G . ? HOH B 118 . ? 1_555 ? 17 AC2 11 G A 16 ? G A 15 . ? 1_555 ? 18 AC2 11 A A 17 ? A A 16 . ? 1_555 ? 19 AC2 11 A A 18 ? A A 17 . ? 1_555 ? 20 AC2 11 G A 19 ? G A 18 . ? 1_555 ? 21 AC2 11 U A 20 ? U A 19 . ? 1_555 ? 22 AC2 11 HOH F . ? HOH A 105 . ? 1_555 ? 23 AC2 11 G B 5 ? G B 27 . ? 1_555 ? 24 AC2 11 U B 6 ? U B 28 . ? 1_555 ? 25 AC2 11 C B 7 ? C B 29 . ? 1_555 ? 26 AC2 11 A B 8 ? A B 30 . ? 1_555 ? 27 AC2 11 C B 9 ? C B 31 . ? 1_555 ? 28 AC3 11 G A 3 ? G A 2 . ? 1_555 ? 29 AC3 11 C A 4 ? C A 3 . ? 1_555 ? 30 AC3 11 HOH F . ? HOH A 124 . ? 1_555 ? 31 AC3 11 U B 15 ? U B 37 . ? 1_555 ? 32 AC3 11 G B 16 ? G B 38 . ? 1_555 ? 33 AC3 11 A B 17 ? A B 39 . ? 1_555 ? 34 AC3 11 HOH G . ? HOH B 100 . ? 1_555 ? 35 AC3 11 HOH G . ? HOH B 101 . ? 1_555 ? 36 AC3 11 HOH G . ? HOH B 111 . ? 1_555 ? 37 AC3 11 HOH G . ? HOH B 118 . ? 1_555 ? 38 AC3 11 HOH G . ? HOH B 119 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A G 2 ? ? OP2 A G 2 ? ? 1.598 1.485 0.113 0.017 N 2 1 P A G 2 ? ? "O5'" A G 2 ? ? 1.496 1.593 -0.097 0.010 N 3 1 "O5'" A G 2 ? ? "C5'" A G 2 ? ? 2.898 1.440 1.458 0.016 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OP1 A G 2 ? ? P A G 2 ? ? OP2 A G 2 ? ? 104.88 119.60 -14.72 1.50 N 2 1 "O5'" A G 2 ? ? P A G 2 ? ? OP1 A G 2 ? ? 118.89 110.70 8.19 1.20 N 3 1 "O5'" A G 2 ? ? "C5'" A G 2 ? ? "C4'" A G 2 ? ? 124.34 111.70 12.64 1.90 N 4 1 P A G 2 ? ? "O5'" A G 2 ? ? "C5'" A G 2 ? ? 65.70 120.90 -55.20 1.60 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text BIS-INTERCALATION # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B U 23 ? B U 1 2 1 Y 1 B U 24 ? B U 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 KAN C1 C N R 114 KAN C2 C N R 115 KAN C3 C N S 116 KAN C4 C N S 117 KAN C5 C N R 118 KAN C6 C N N 119 KAN C7 C N R 120 KAN C8 C N S 121 KAN C9 C N R 122 KAN C10 C N R 123 KAN C11 C N S 124 KAN C12 C N N 125 KAN C13 C N S 126 KAN C14 C N R 127 KAN C15 C N S 128 KAN C16 C N S 129 KAN C17 C N R 130 KAN C18 C N N 131 KAN N1 N N N 132 KAN N2 N N N 133 KAN N3 N N N 134 KAN N4 N N N 135 KAN O5 O N N 136 KAN O6 O N N 137 KAN O7 O N N 138 KAN O8 O N N 139 KAN O9 O N N 140 KAN O10 O N N 141 KAN O11 O N N 142 KAN O12 O N N 143 KAN O13 O N N 144 KAN O14 O N N 145 KAN O15 O N N 146 KAN H1 H N N 147 KAN H2 H N N 148 KAN H3 H N N 149 KAN H4 H N N 150 KAN H5 H N N 151 KAN H61 H N N 152 KAN H62 H N N 153 KAN H7 H N N 154 KAN H8 H N N 155 KAN H9 H N N 156 KAN H10 H N N 157 KAN H11 H N N 158 KAN H121 H N N 159 KAN H122 H N N 160 KAN H13 H N N 161 KAN H14 H N N 162 KAN H15 H N N 163 KAN H16 H N N 164 KAN H17 H N N 165 KAN H181 H N N 166 KAN H182 H N N 167 KAN HN11 H N N 168 KAN HN12 H N N 169 KAN HN21 H N N 170 KAN HN22 H N N 171 KAN HN31 H N N 172 KAN HN32 H N N 173 KAN HN41 H N N 174 KAN HN42 H N N 175 KAN HO6 H N N 176 KAN HO7 H N N 177 KAN HO8 H N N 178 KAN HO1 H N N 179 KAN HO3 H N N 180 KAN HO4 H N N 181 KAN HO5 H N N 182 U OP3 O N N 183 U P P N N 184 U OP1 O N N 185 U OP2 O N N 186 U "O5'" O N N 187 U "C5'" C N N 188 U "C4'" C N R 189 U "O4'" O N N 190 U "C3'" C N S 191 U "O3'" O N N 192 U "C2'" C N R 193 U "O2'" O N N 194 U "C1'" C N R 195 U N1 N N N 196 U C2 C N N 197 U O2 O N N 198 U N3 N N N 199 U C4 C N N 200 U O4 O N N 201 U C5 C N N 202 U C6 C N N 203 U HOP3 H N N 204 U HOP2 H N N 205 U "H5'" H N N 206 U "H5''" H N N 207 U "H4'" H N N 208 U "H3'" H N N 209 U "HO3'" H N N 210 U "H2'" H N N 211 U "HO2'" H N N 212 U "H1'" H N N 213 U H3 H N N 214 U H5 H N N 215 U H6 H N N 216 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 KAN C1 C2 sing N N 118 KAN C1 O5 sing N N 119 KAN C1 O9 sing N N 120 KAN C1 H1 sing N N 121 KAN C2 C3 sing N N 122 KAN C2 O6 sing N N 123 KAN C2 H2 sing N N 124 KAN C3 C4 sing N N 125 KAN C3 O7 sing N N 126 KAN C3 H3 sing N N 127 KAN C4 C5 sing N N 128 KAN C4 O8 sing N N 129 KAN C4 H4 sing N N 130 KAN C5 C6 sing N N 131 KAN C5 O5 sing N N 132 KAN C5 H5 sing N N 133 KAN C6 N1 sing N N 134 KAN C6 H61 sing N N 135 KAN C6 H62 sing N N 136 KAN C7 C8 sing N N 137 KAN C7 C12 sing N N 138 KAN C7 N3 sing N N 139 KAN C7 H7 sing N N 140 KAN C8 C9 sing N N 141 KAN C8 O11 sing N N 142 KAN C8 H8 sing N N 143 KAN C9 C10 sing N N 144 KAN C9 O10 sing N N 145 KAN C9 H9 sing N N 146 KAN C10 C11 sing N N 147 KAN C10 O9 sing N N 148 KAN C10 H10 sing N N 149 KAN C11 C12 sing N N 150 KAN C11 N2 sing N N 151 KAN C11 H11 sing N N 152 KAN C12 H121 sing N N 153 KAN C12 H122 sing N N 154 KAN C13 C14 sing N N 155 KAN C13 O11 sing N N 156 KAN C13 O12 sing N N 157 KAN C13 H13 sing N N 158 KAN C14 C15 sing N N 159 KAN C14 O13 sing N N 160 KAN C14 H14 sing N N 161 KAN C15 C16 sing N N 162 KAN C15 N4 sing N N 163 KAN C15 H15 sing N N 164 KAN C16 C17 sing N N 165 KAN C16 O14 sing N N 166 KAN C16 H16 sing N N 167 KAN C17 C18 sing N N 168 KAN C17 O12 sing N N 169 KAN C17 H17 sing N N 170 KAN C18 O15 sing N N 171 KAN C18 H181 sing N N 172 KAN C18 H182 sing N N 173 KAN N1 HN11 sing N N 174 KAN N1 HN12 sing N N 175 KAN N2 HN21 sing N N 176 KAN N2 HN22 sing N N 177 KAN N3 HN31 sing N N 178 KAN N3 HN32 sing N N 179 KAN N4 HN41 sing N N 180 KAN N4 HN42 sing N N 181 KAN O6 HO6 sing N N 182 KAN O7 HO7 sing N N 183 KAN O8 HO8 sing N N 184 KAN O10 HO1 sing N N 185 KAN O13 HO3 sing N N 186 KAN O14 HO4 sing N N 187 KAN O15 HO5 sing N N 188 U OP3 P sing N N 189 U OP3 HOP3 sing N N 190 U P OP1 doub N N 191 U P OP2 sing N N 192 U P "O5'" sing N N 193 U OP2 HOP2 sing N N 194 U "O5'" "C5'" sing N N 195 U "C5'" "C4'" sing N N 196 U "C5'" "H5'" sing N N 197 U "C5'" "H5''" sing N N 198 U "C4'" "O4'" sing N N 199 U "C4'" "C3'" sing N N 200 U "C4'" "H4'" sing N N 201 U "O4'" "C1'" sing N N 202 U "C3'" "O3'" sing N N 203 U "C3'" "C2'" sing N N 204 U "C3'" "H3'" sing N N 205 U "O3'" "HO3'" sing N N 206 U "C2'" "O2'" sing N N 207 U "C2'" "C1'" sing N N 208 U "C2'" "H2'" sing N N 209 U "O2'" "HO2'" sing N N 210 U "C1'" N1 sing N N 211 U "C1'" "H1'" sing N N 212 U N1 C2 sing N N 213 U N1 C6 sing N N 214 U C2 O2 doub N N 215 U C2 N3 sing N N 216 U N3 C4 sing N N 217 U N3 H3 sing N N 218 U C4 O4 doub N N 219 U C4 C5 sing N N 220 U C5 C6 doub N N 221 U C5 H5 sing N N 222 U C6 H6 sing N N 223 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2ESI 'double helix' 2ESI 'a-form double helix' 2ESI 'mismatched base pair' 2ESI 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 3 1_555 B C 23 1_555 -0.086 -0.424 0.190 -2.434 -1.255 -1.148 1 A_G2:C45_B A 2 ? B 45 ? 19 1 1 A C 4 1_555 B G 22 1_555 -0.002 -0.180 0.084 -1.522 -12.948 1.201 2 A_C3:G44_B A 3 ? B 44 ? 19 1 1 A G 5 1_555 B C 21 1_555 -0.835 0.036 -0.356 -4.732 -11.276 6.305 3 A_G4:C43_B A 4 ? B 43 ? 19 1 1 A U 6 1_555 B U 20 1_555 -2.473 -1.265 -0.357 8.725 -8.087 -20.068 4 A_U5:U42_B A 5 ? B 42 ? ? ? 1 A C 7 1_555 B G 19 1_555 0.320 0.037 -0.615 3.360 6.789 5.795 5 A_C6:G41_B A 6 ? B 41 ? 19 1 1 A C 9 1_555 B G 16 1_555 0.188 -0.198 -0.235 15.762 -28.657 5.660 6 A_C8:G38_B A 8 ? B 38 ? 19 1 1 A A 10 1_555 B U 15 1_555 0.017 0.010 -0.216 2.621 -23.105 0.794 7 A_A9:U37_B A 9 ? B 37 ? 20 1 1 A C 11 1_555 B G 14 1_555 -0.147 -0.087 -0.211 9.749 -18.333 0.744 8 A_C10:G36_B A 10 ? B 36 ? 19 1 1 A C 12 1_555 B G 13 1_555 -0.030 -0.058 0.080 -5.658 -10.336 5.028 9 A_C11:G35_B A 11 ? B 35 ? 19 1 1 A G 13 1_555 B C 12 1_555 -0.454 -0.293 0.120 -3.909 -13.228 0.816 10 A_G12:C34_B A 12 ? B 34 ? 19 1 1 A G 14 1_555 B C 11 1_555 0.466 -0.218 0.010 -3.202 -21.815 4.785 11 A_G13:C33_B A 13 ? B 33 ? 19 1 1 A U 15 1_555 B A 10 1_555 1.149 -0.484 0.104 -0.702 -10.589 1.746 12 A_U14:A32_B A 14 ? B 32 ? 20 1 1 A G 16 1_555 B C 9 1_555 0.328 -0.107 -0.501 -16.535 -13.756 7.489 13 A_G15:C31_B A 15 ? B 31 ? 19 1 1 A G 19 1_555 B C 7 1_555 0.309 -0.052 -0.321 -4.538 -2.531 2.700 14 A_G18:C29_B A 18 ? B 29 ? 19 1 1 A U 20 1_555 B U 6 1_555 1.443 -1.433 -0.299 -5.746 -3.956 -12.850 15 A_U19:U28_B A 19 ? B 28 ? ? ? 1 A C 21 1_555 B G 5 1_555 0.194 -0.595 -0.156 5.885 -4.203 -3.689 16 A_C20:G27_B A 20 ? B 27 ? 19 1 1 A G 22 1_555 B C 4 1_555 0.673 -0.219 0.462 0.015 -4.725 0.951 17 A_G21:C26_B A 21 ? B 26 ? 19 1 1 A C 23 1_555 B G 3 1_555 -0.628 0.112 0.751 -8.760 -2.876 4.037 18 A_C22:G25_B A 22 ? B 25 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 3 1_555 B C 23 1_555 A C 4 1_555 B G 22 1_555 -0.267 -1.477 3.257 1.905 2.993 36.625 -2.738 0.677 3.113 4.749 -3.022 36.790 1 AA_G2C3:G44C45_BB A 2 ? B 45 ? A 3 ? B 44 ? 1 A C 4 1_555 B G 22 1_555 A G 5 1_555 B C 21 1_555 0.100 -1.933 3.266 2.001 6.995 23.330 -6.565 0.335 2.584 16.783 -4.801 24.424 2 AA_C3G4:C43G44_BB A 3 ? B 44 ? A 4 ? B 43 ? 1 A G 5 1_555 B C 21 1_555 A U 6 1_555 B U 20 1_555 -0.677 -2.027 2.894 -0.564 5.024 25.915 -5.550 1.358 2.477 11.068 1.242 26.395 3 AA_G4U5:U42C43_BB A 4 ? B 43 ? A 5 ? B 42 ? 1 A U 6 1_555 B U 20 1_555 A C 7 1_555 B G 19 1_555 2.104 -2.082 3.664 0.805 -0.657 42.106 -2.820 -2.834 3.733 -0.915 -1.120 42.119 4 AA_U5C6:G41U42_BB A 5 ? B 42 ? A 6 ? B 41 ? 1 A C 7 1_555 B G 19 1_555 A C 9 1_555 B G 16 1_555 1.233 -3.539 6.307 -8.285 19.677 75.802 -3.794 -1.394 5.270 15.722 6.620 78.314 5 AA_C6C8:G38G41_BB A 6 ? B 41 ? A 8 ? B 38 ? 1 A C 9 1_555 B G 16 1_555 A A 10 1_555 B U 15 1_555 -1.056 -0.990 3.700 -3.189 18.324 32.890 -4.097 1.190 2.865 29.601 5.152 37.658 6 AA_C8A9:U37G38_BB A 8 ? B 38 ? A 9 ? B 37 ? 1 A A 10 1_555 B U 15 1_555 A C 11 1_555 B G 14 1_555 0.585 -1.858 3.041 -1.003 0.404 30.660 -3.586 -1.288 2.997 0.763 1.897 30.679 7 AA_A9C10:G36U37_BB A 9 ? B 37 ? A 10 ? B 36 ? 1 A C 11 1_555 B G 14 1_555 A C 12 1_555 B G 13 1_555 -0.387 -1.814 3.778 -3.884 5.757 33.304 -4.129 -0.030 3.447 9.911 6.687 34.000 8 AA_C10C11:G35G36_BB A 10 ? B 36 ? A 11 ? B 35 ? 1 A C 12 1_555 B G 13 1_555 A G 13 1_555 B C 12 1_555 0.194 -1.802 2.917 1.008 10.746 25.552 -5.805 -0.215 2.014 23.030 -2.161 27.703 9 AA_C11G12:C34G35_BB A 11 ? B 35 ? A 12 ? B 34 ? 1 A G 13 1_555 B C 12 1_555 A G 14 1_555 B C 11 1_555 -0.014 -1.352 3.349 2.506 6.133 37.542 -2.842 0.336 3.091 9.439 -3.856 38.102 10 AA_G12G13:C33C34_BB A 12 ? B 34 ? A 13 ? B 33 ? 1 A G 14 1_555 B C 11 1_555 A U 15 1_555 B A 10 1_555 0.180 -1.562 3.132 -1.274 -1.309 31.427 -2.642 -0.562 3.183 -2.413 2.349 31.479 11 AA_G13U14:A32C33_BB A 13 ? B 33 ? A 14 ? B 32 ? 1 A U 15 1_555 B A 10 1_555 A G 16 1_555 B C 9 1_555 0.597 -1.444 3.306 7.820 19.424 33.553 -4.270 -0.030 2.255 30.267 -12.185 39.391 12 AA_U14G15:C31A32_BB A 14 ? B 32 ? A 15 ? B 31 ? 1 A G 16 1_555 B C 9 1_555 A G 19 1_555 B C 7 1_555 -1.729 -3.461 6.295 9.003 15.532 76.559 -3.527 1.824 5.427 12.376 -7.174 78.320 13 AA_G15G18:C29C31_BB A 15 ? B 31 ? A 18 ? B 29 ? 1 A G 19 1_555 B C 7 1_555 A U 20 1_555 B U 6 1_555 -1.547 -1.830 3.549 1.494 -0.997 34.991 -2.878 2.813 3.531 -1.658 -2.483 35.035 14 AA_G18U19:U28C29_BB A 18 ? B 29 ? A 19 ? B 28 ? 1 A U 20 1_555 B U 6 1_555 A C 21 1_555 B G 5 1_555 0.311 -2.502 2.973 0.341 6.634 25.286 -7.003 -0.612 2.258 14.831 -0.762 26.130 15 AA_U19C20:G27U28_BB A 19 ? B 28 ? A 20 ? B 27 ? 1 A C 21 1_555 B G 5 1_555 A G 22 1_555 B C 4 1_555 0.528 -1.842 3.162 -1.424 5.307 30.663 -4.360 -1.234 2.785 9.935 2.666 31.140 16 AA_C20G21:C26G27_BB A 20 ? B 27 ? A 21 ? B 26 ? 1 A G 22 1_555 B C 4 1_555 A C 23 1_555 B G 3 1_555 0.491 -2.687 3.355 -0.122 1.644 28.600 -5.803 -1.020 3.197 3.324 0.246 28.647 17 AA_G21C22:G25C26_BB A 21 ? B 26 ? A 22 ? B 25 ? # _atom_sites.entry_id 2ESI _atom_sites.fract_transf_matrix[1][1] 0.021106 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006606 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030553 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019883 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_