HEADER OXIDOREDUCTASE 27-OCT-05 2ET1 TITLE OXALATE OXIDASE IN COMPLEX WITH SUBSTRATE ANALOGUE GLYCOLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXALATE OXIDASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GERMIN; COMPND 5 EC: 1.2.3.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HORDEUM VULGARE; SOURCE 3 ORGANISM_TAXID: 4513 KEYWDS DOUBLE STRANDED BETA HELIX, CUPIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.-S.ROSE,O.OPALEYE,E.-J.WOO,R.W.PICKERSGILL REVDAT 6 23-AUG-23 2ET1 1 REMARK HETSYN LINK REVDAT 5 18-OCT-17 2ET1 1 REMARK REVDAT 4 13-JUL-11 2ET1 1 VERSN REVDAT 3 24-FEB-09 2ET1 1 VERSN REVDAT 2 28-MAR-06 2ET1 1 JRNL REVDAT 1 22-NOV-05 2ET1 0 JRNL AUTH O.OPALEYE,R.-S.ROSE,M.M.WHITTAKER,E.-J.WOO,J.W.WHITTAKER, JRNL AUTH 2 R.W.PICKERSGILL JRNL TITL STRUCTURAL AND SPECTROSCOPIC STUDIES SHED LIGHT ON THE JRNL TITL 2 MECHANISM OF OXALATE OXIDASE JRNL REF J.BIOL.CHEM. V. 281 6428 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16291738 JRNL DOI 10.1074/JBC.M510256200 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 23143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1247 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1658 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1700 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1491 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.14000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.304 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1530 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2082 ; 1.391 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 200 ; 6.492 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 57 ;33.196 ;24.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 240 ;11.815 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;20.489 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 239 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1161 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 532 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1035 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 56 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 99 ; 0.318 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1032 ; 0.857 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1618 ; 1.186 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 556 ; 2.106 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 464 ; 3.118 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ET1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000035056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24460 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.02500 REMARK 200 R SYM (I) : 0.02500 REMARK 200 FOR THE DATA SET : 40.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.04700 REMARK 200 R SYM FOR SHELL (I) : 0.04700 REMARK 200 FOR SHELL : 26.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: FOURIER METHODS REMARK 200 STARTING MODEL: OXALATE OXIDASE (PDB ENTRY 1FI2) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.3M AMMONIUM SULFATE, 5% 2-PROPANOL, REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 48.15100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.79999 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 36.04433 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 48.15100 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.79999 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 36.04433 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 48.15100 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.79999 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 36.04433 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 48.15100 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.79999 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.04433 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 48.15100 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.79999 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 36.04433 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 48.15100 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.79999 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.04433 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.59999 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 72.08867 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 55.59999 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 72.08867 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 55.59999 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 72.08867 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 55.59999 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.08867 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 55.59999 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 72.08867 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 55.59999 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 72.08867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 35330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -278.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 108.13300 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 108.13300 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 108.13300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 10 75.30 -160.87 REMARK 500 THR A 69 -8.92 75.97 REMARK 500 ASN A 154 39.88 -85.54 REMARK 500 ASN A 157 74.83 -154.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 88 NE2 REMARK 620 2 HIS A 90 NE2 96.4 REMARK 620 3 GLU A 95 OE1 174.1 84.8 REMARK 620 4 HIS A 137 NE2 79.8 96.3 94.3 REMARK 620 5 GLV A 203 O3 90.6 83.1 95.3 170.3 REMARK 620 6 HOH A 221 O 93.3 165.5 86.7 96.1 86.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLV A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FI2 RELATED DB: PDB REMARK 900 OXALATE OXIDASE REMARK 900 RELATED ID: 2ET7 RELATED DB: PDB REMARK 900 RELATED ID: 2ETE RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR STATES THAT THE ELECTRON DENSITY SUGGESTS REMARK 999 THE FIRST AMINO ACID IS THR RATHER THAN SER. DBREF 2ET1 A 1 201 UNP P45850 OXO1_HORVU 1 201 SEQADV 2ET1 THR A 1 UNP P45850 SER 1 SEE REMARK 999 SEQRES 1 A 201 THR ASP PRO ASP PRO LEU GLN ASP PHE CYS VAL ALA ASP SEQRES 2 A 201 LEU ASP GLY LYS ALA VAL SER VAL ASN GLY HIS THR CYS SEQRES 3 A 201 LYS PRO MET SER GLU ALA GLY ASP ASP PHE LEU PHE SER SEQRES 4 A 201 SER LYS LEU THR LYS ALA GLY ASN THR SER THR PRO ASN SEQRES 5 A 201 GLY SER ALA VAL THR GLU LEU ASP VAL ALA GLU TRP PRO SEQRES 6 A 201 GLY THR ASN THR LEU GLY VAL SER MET ASN ARG VAL ASP SEQRES 7 A 201 PHE ALA PRO GLY GLY THR ASN PRO PRO HIS ILE HIS PRO SEQRES 8 A 201 ARG ALA THR GLU ILE GLY MET VAL MET LYS GLY GLU LEU SEQRES 9 A 201 LEU VAL GLY ILE LEU GLY SER LEU ASP SER GLY ASN LYS SEQRES 10 A 201 LEU TYR SER ARG VAL VAL ARG ALA GLY GLU THR PHE VAL SEQRES 11 A 201 ILE PRO ARG GLY LEU MET HIS PHE GLN PHE ASN VAL GLY SEQRES 12 A 201 LYS THR GLU ALA TYR MET VAL VAL SER PHE ASN SER GLN SEQRES 13 A 201 ASN PRO GLY ILE VAL PHE VAL PRO LEU THR LEU PHE GLY SEQRES 14 A 201 SER ASP PRO PRO ILE PRO THR PRO VAL LEU THR LYS ALA SEQRES 15 A 201 LEU ARG VAL GLU ALA GLY VAL VAL GLU LEU LEU LYS SER SEQRES 16 A 201 LYS PHE ALA GLY GLY SER HET MN A 202 1 HET GLV A 203 5 HETNAM MN MANGANESE (II) ION HETNAM GLV GLYOXYLIC ACID HETSYN GLV GLYOXALATE; GLYOXYLATE FORMUL 2 MN MN 2+ FORMUL 3 GLV C2 H2 O3 FORMUL 4 HOH *163(H2 O) HELIX 1 1 PRO A 28 ALA A 32 5 5 HELIX 2 2 TRP A 64 ASN A 68 5 5 HELIX 3 3 SER A 111 GLY A 115 5 5 HELIX 4 4 VAL A 163 SER A 170 1 8 HELIX 5 5 PRO A 175 ARG A 184 1 10 HELIX 6 6 GLU A 186 LYS A 196 1 11 SHEET 1 A 5 SER A 54 LEU A 59 0 SHEET 2 A 5 SER A 73 PHE A 79 -1 O ARG A 76 N THR A 57 SHEET 3 A 5 ALA A 147 PHE A 153 -1 O ALA A 147 N PHE A 79 SHEET 4 A 5 GLU A 95 LYS A 101 -1 N ILE A 96 O SER A 152 SHEET 5 A 5 THR A 128 ILE A 131 -1 O ILE A 131 N GLU A 95 SHEET 1 B 5 LEU A 118 VAL A 123 0 SHEET 2 B 5 LEU A 104 LEU A 109 -1 N LEU A 104 O VAL A 123 SHEET 3 B 5 HIS A 137 ASN A 141 -1 O PHE A 140 N LEU A 105 SHEET 4 B 5 THR A 84 ILE A 89 -1 N HIS A 88 O HIS A 137 SHEET 5 B 5 VAL A 161 PHE A 162 -1 O VAL A 161 N ILE A 89 SSBOND 1 CYS A 10 CYS A 26 1555 1555 2.05 LINK NE2 HIS A 88 MN MN A 202 1555 1555 2.37 LINK NE2 HIS A 90 MN MN A 202 1555 1555 2.24 LINK OE1 GLU A 95 MN MN A 202 1555 1555 2.17 LINK NE2 HIS A 137 MN MN A 202 1555 1555 2.31 LINK MN MN A 202 O3 GLV A 203 1555 1555 2.26 LINK MN MN A 202 O HOH A 221 1555 1555 2.26 CISPEP 1 ASP A 171 PRO A 172 0 -2.56 SITE 1 AC1 6 HIS A 88 HIS A 90 GLU A 95 HIS A 137 SITE 2 AC1 6 GLV A 203 HOH A 221 SITE 1 AC2 10 ASN A 75 VAL A 77 ASN A 85 HIS A 88 SITE 2 AC2 10 HIS A 90 GLU A 95 MET A 149 MN A 202 SITE 3 AC2 10 HOH A 221 HOH A 333 CRYST1 96.302 96.302 108.133 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010384 0.005995 0.000000 0.00000 SCALE2 0.000000 0.011990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009248 0.00000