data_2ET5 # _entry.id 2ET5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ET5 pdb_00002et5 10.2210/pdb2et5/pdb NDB DR0017 ? ? RCSB RCSB035060 ? ? WWPDB D_1000035060 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1J7T _pdbx_database_related.details 'COMPLEX BETWEEN PAROMOMYCIN AND THE 16S-RRNA A-SITE AT 2.5A RESOLUTION' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ET5 _pdbx_database_status.recvd_initial_deposition_date 2005-10-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Westhof, E.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscoding. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 33 _citation.page_first 5677 _citation.page_last 5690 _citation.year 2005 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16214802 _citation.pdbx_database_id_DOI 10.1093/nar/gki862 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Francois, B.' 1 ? primary 'Russell, R.J.' 2 ? primary 'Murray, J.B.' 3 ? primary 'Aboul-ela, F.' 4 ? primary 'Masquida, B.' 5 ? primary 'Vicens, Q.' 6 ? primary 'Westhof, E.' 7 ? # _cell.entry_id 2ET5 _cell.length_a 97.964 _cell.length_b 33.200 _cell.length_c 44.860 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ET5 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'" 7048.259 2 ? ? ? ? 2 non-polymer syn RIBOSTAMYCIN 454.473 4 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 91 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CGCGUCACACCGGUGAAGUCGC _entity_poly.pdbx_seq_one_letter_code_can CGCGUCACACCGGUGAAGUCGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 C n 1 4 G n 1 5 U n 1 6 C n 1 7 A n 1 8 C n 1 9 A n 1 10 C n 1 11 C n 1 12 G n 1 13 G n 1 14 U n 1 15 G n 1 16 A n 1 17 A n 1 18 G n 1 19 U n 1 20 C n 1 21 G n 1 22 C n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2ET5 _struct_ref.pdbx_db_accession 2ET5 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2ET5 A 1 ? 22 ? 2ET5 1 ? 22 ? 1 22 2 1 2ET5 B 1 ? 22 ? 2ET5 24 ? 45 ? 24 45 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 RIO non-polymer . RIBOSTAMYCIN ;5-AMINO-2-AMINOMETHYL-6-[4,6-DIAMINO-2-(3,4-DIHYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-2-YLOXY)-3-HYDROXY-CYCLOHEXYLOXY ]-TETRAHYDRO-PYRAN-3,4-DIOL; (1R,2R,3S,4R,6S)-4,6-diamino-3-hydroxy-2-(beta-D-ribofuranosyloxy)cyclohexyl 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranoside ; 'C17 H34 N4 O10' 454.473 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 2ET5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.59 _exptl_crystal.density_percent_sol 52.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.4 _exptl_crystal_grow.pdbx_details 'MPD, NACL, MGSO4, GLYCEROL, NA CACODYLATE, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 310K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 NACL ? ? ? 1 3 1 MGSO4 ? ? ? 1 4 1 GLYCEROL ? ? ? 1 5 1 'NA CACODYLATE' ? ? ? 1 6 1 H2O ? ? ? 1 7 2 MPD ? ? ? 1 8 2 NACL ? ? ? 1 9 2 MGSO4 ? ? ? 1 10 2 'NA CACODYLATE' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.936 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.936 # _reflns.entry_id 2ET5 _reflns.observed_criterion_sigma_I 5 _reflns.observed_criterion_sigma_F 5 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.1 _reflns.number_obs 9000 _reflns.number_all 9000 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2ET5 _refine.ls_number_reflns_obs 7349 _refine.ls_number_reflns_all 7904 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.0 _refine.ls_d_res_high 2.2 _refine.ls_percent_reflns_obs 93.0 _refine.ls_R_factor_obs 0.2275 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2275 _refine.ls_R_factor_R_free 0.2651 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 719 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB Entry: 1J7T' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ;G. PARKINSON, J. VOJTECHOVSKY, L. CLOWNEY,A.T. BRUNGER, H.M. BERMAN, NEW PARAMETERSFOR THE REFINEMENT OF NUCLEIC ACID CONTAINING STRUCTURES, ACTA CRYST. D, 52,57-64 (1996) ; _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2ET5 _refine_analyze.Luzzati_coordinate_error_obs 0.32 _refine_analyze.Luzzati_sigma_a_obs 0.34 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.36 _refine_analyze.Luzzati_sigma_a_free 0.45 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 898 _refine_hist.pdbx_number_atoms_ligand 129 _refine_hist.number_atoms_solvent 91 _refine_hist.number_atoms_total 1118 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 32.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.0050 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d 0.8911 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 8.2797 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.2411 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 2ET5 _struct.title 'Complex Between Ribostamycin and the 16S-RRNA A-Site' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ET5 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA-AMINOGLYCOSIDE INTERACTIONS, A SITE, UOU PAIRS, AA BULGES, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 4 ? I N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 22 N3 ? ? A G 2 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 22 O2 ? ? A G 2 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 22 N4 ? ? A G 2 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 21 N1 ? ? A C 3 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 21 O6 ? ? A C 3 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 21 N2 ? ? A C 3 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 20 N3 ? ? A G 4 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 20 O2 ? ? A G 4 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 20 N4 ? ? A G 4 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 5 O4 ? ? ? 1_555 B U 19 N3 ? ? A U 5 B U 42 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog11 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 18 N1 ? ? A C 6 B G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 18 O6 ? ? A C 6 B G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 18 N2 ? ? A C 6 B G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 15 N1 ? ? A C 8 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 15 O6 ? ? A C 8 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 15 N2 ? ? A C 8 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 14 N3 ? ? A A 9 B U 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 14 O4 ? ? A A 9 B U 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 13 N1 ? ? A C 10 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 13 O6 ? ? A C 10 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 13 N2 ? ? A C 10 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 11 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 11 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 11 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 12 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 12 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 12 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 13 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 13 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 13 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 14 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 14 B A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 14 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 14 B A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 15 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 15 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 15 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 15 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 15 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 18 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 18 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 18 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 18 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 18 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 18 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 19 N3 ? ? ? 1_555 B U 5 O4 ? ? A U 19 B U 28 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog40 hydrog ? ? A C 20 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 20 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 20 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 20 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 20 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 20 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 21 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 21 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 21 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 21 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 21 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 21 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 22 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 22 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 22 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 22 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 22 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 22 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B SO4 55 ? 4 'BINDING SITE FOR RESIDUE SO4 B 55' AC2 Software B RIO 51 ? 16 'BINDING SITE FOR RESIDUE RIO B 51' AC3 Software A RIO 54 ? 15 'BINDING SITE FOR RESIDUE RIO A 54' AC4 Software B RIO 52 ? 17 'BINDING SITE FOR RESIDUE RIO B 52' AC5 Software B RIO 53 ? 17 'BINDING SITE FOR RESIDUE RIO B 53' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 G A 12 ? G A 12 . ? 3_546 ? 2 AC1 4 A B 16 ? A B 39 . ? 1_555 ? 3 AC1 4 U B 19 ? U B 42 . ? 3_556 ? 4 AC1 4 HOH I . ? HOH B 387 . ? 1_555 ? 5 AC2 16 C A 6 ? C A 6 . ? 1_555 ? 6 AC2 16 A A 7 ? A A 7 . ? 1_555 ? 7 AC2 16 HOH H . ? HOH A 378 . ? 1_555 ? 8 AC2 16 G B 15 ? G B 38 . ? 1_555 ? 9 AC2 16 A B 16 ? A B 39 . ? 1_555 ? 10 AC2 16 A B 17 ? A B 40 . ? 1_555 ? 11 AC2 16 G B 18 ? G B 41 . ? 1_555 ? 12 AC2 16 U B 19 ? U B 42 . ? 1_555 ? 13 AC2 16 RIO F . ? RIO B 52 . ? 1_555 ? 14 AC2 16 HOH I . ? HOH B 303 . ? 1_555 ? 15 AC2 16 HOH I . ? HOH B 307 . ? 1_555 ? 16 AC2 16 HOH I . ? HOH B 311 . ? 1_555 ? 17 AC2 16 HOH I . ? HOH B 345 . ? 1_555 ? 18 AC2 16 HOH I . ? HOH B 346 . ? 1_555 ? 19 AC2 16 HOH I . ? HOH B 347 . ? 1_555 ? 20 AC2 16 HOH I . ? HOH B 349 . ? 1_555 ? 21 AC3 15 G A 15 ? G A 15 . ? 1_555 ? 22 AC3 15 A A 16 ? A A 16 . ? 1_555 ? 23 AC3 15 A A 17 ? A A 17 . ? 1_555 ? 24 AC3 15 G A 18 ? G A 18 . ? 1_555 ? 25 AC3 15 U A 19 ? U A 19 . ? 1_555 ? 26 AC3 15 HOH H . ? HOH A 318 . ? 1_555 ? 27 AC3 15 HOH H . ? HOH A 322 . ? 1_555 ? 28 AC3 15 HOH H . ? HOH A 342 . ? 1_555 ? 29 AC3 15 HOH H . ? HOH A 356 . ? 1_555 ? 30 AC3 15 HOH H . ? HOH A 364 . ? 1_555 ? 31 AC3 15 HOH H . ? HOH A 365 . ? 1_555 ? 32 AC3 15 C B 6 ? C B 29 . ? 1_555 ? 33 AC3 15 A B 7 ? A B 30 . ? 1_555 ? 34 AC3 15 RIO G . ? RIO B 53 . ? 1_555 ? 35 AC3 15 HOH I . ? HOH B 353 . ? 1_555 ? 36 AC4 17 U A 5 ? U A 5 . ? 1_555 ? 37 AC4 17 C A 6 ? C A 6 . ? 1_555 ? 38 AC4 17 A A 7 ? A A 7 . ? 1_555 ? 39 AC4 17 C A 8 ? C A 8 . ? 1_555 ? 40 AC4 17 HOH H . ? HOH A 308 . ? 1_555 ? 41 AC4 17 C B 11 ? C B 34 . ? 1_555 ? 42 AC4 17 G B 12 ? G B 35 . ? 1_555 ? 43 AC4 17 G B 13 ? G B 36 . ? 1_555 ? 44 AC4 17 U B 14 ? U B 37 . ? 1_555 ? 45 AC4 17 RIO E . ? RIO B 51 . ? 1_555 ? 46 AC4 17 HOH I . ? HOH B 301 . ? 1_555 ? 47 AC4 17 HOH I . ? HOH B 302 . ? 1_555 ? 48 AC4 17 HOH I . ? HOH B 304 . ? 1_555 ? 49 AC4 17 HOH I . ? HOH B 340 . ? 1_555 ? 50 AC4 17 HOH I . ? HOH B 348 . ? 1_555 ? 51 AC4 17 HOH I . ? HOH B 376 . ? 1_555 ? 52 AC4 17 HOH I . ? HOH B 380 . ? 1_555 ? 53 AC5 17 C A 11 ? C A 11 . ? 1_555 ? 54 AC5 17 G A 12 ? G A 12 . ? 1_555 ? 55 AC5 17 G A 13 ? G A 13 . ? 1_555 ? 56 AC5 17 U A 14 ? U A 14 . ? 1_555 ? 57 AC5 17 RIO C . ? RIO A 54 . ? 1_555 ? 58 AC5 17 HOH H . ? HOH A 330 . ? 1_555 ? 59 AC5 17 HOH H . ? HOH A 367 . ? 1_555 ? 60 AC5 17 HOH H . ? HOH A 373 . ? 1_555 ? 61 AC5 17 U B 5 ? U B 28 . ? 1_555 ? 62 AC5 17 C B 6 ? C B 29 . ? 1_555 ? 63 AC5 17 A B 7 ? A B 30 . ? 1_555 ? 64 AC5 17 C B 8 ? C B 31 . ? 1_555 ? 65 AC5 17 HOH I . ? HOH B 333 . ? 1_555 ? 66 AC5 17 HOH I . ? HOH B 363 . ? 1_555 ? 67 AC5 17 HOH I . ? HOH B 366 . ? 1_555 ? 68 AC5 17 HOH I . ? HOH B 372 . ? 1_555 ? 69 AC5 17 HOH I . ? HOH B 389 . ? 1_555 ? # _database_PDB_matrix.entry_id 2ET5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ET5 _atom_sites.fract_transf_matrix[1][1] 0.010208 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030120 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022292 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 ? ? ? A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 U 5 5 5 U U A . n A 1 6 C 6 6 6 C C A . n A 1 7 A 7 7 7 A A A . n A 1 8 C 8 8 8 C C A . n A 1 9 A 9 9 9 A A A . n A 1 10 C 10 10 10 C C A . n A 1 11 C 11 11 11 C C A . n A 1 12 G 12 12 12 G G A . n A 1 13 G 13 13 13 G G A . n A 1 14 U 14 14 14 U U A . n A 1 15 G 15 15 15 G G A . n A 1 16 A 16 16 16 A A A . n A 1 17 A 17 17 17 A A A . n A 1 18 G 18 18 18 G G A . n A 1 19 U 19 19 19 U U A . n A 1 20 C 20 20 20 C C A . n A 1 21 G 21 21 21 G G A . n A 1 22 C 22 22 22 C C A . n B 1 1 C 1 24 ? ? ? B . n B 1 2 G 2 25 25 G G B . n B 1 3 C 3 26 26 C C B . n B 1 4 G 4 27 27 G G B . n B 1 5 U 5 28 28 U U B . n B 1 6 C 6 29 29 C C B . n B 1 7 A 7 30 30 A A B . n B 1 8 C 8 31 31 C C B . n B 1 9 A 9 32 32 A A B . n B 1 10 C 10 33 33 C C B . n B 1 11 C 11 34 34 C C B . n B 1 12 G 12 35 35 G G B . n B 1 13 G 13 36 36 G G B . n B 1 14 U 14 37 37 U U B . n B 1 15 G 15 38 38 G G B . n B 1 16 A 16 39 39 A A B . n B 1 17 A 17 40 40 A A B . n B 1 18 G 18 41 41 G G B . n B 1 19 U 19 42 42 U U B . n B 1 20 C 20 43 43 C C B . n B 1 21 G 21 44 44 G G B . n B 1 22 C 22 45 45 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RIO 1 54 54 RIO RIO A . D 3 SO4 1 55 54 SO4 SO4 B . E 2 RIO 1 51 51 RIO RIO B . F 2 RIO 1 52 52 RIO RIO B . G 2 RIO 1 53 53 RIO RIO B . H 4 HOH 1 300 300 HOH HOH A . H 4 HOH 2 308 308 HOH HOH A . H 4 HOH 3 309 309 HOH HOH A . H 4 HOH 4 310 310 HOH HOH A . H 4 HOH 5 312 312 HOH HOH A . H 4 HOH 6 313 313 HOH HOH A . H 4 HOH 7 315 315 HOH HOH A . H 4 HOH 8 316 316 HOH HOH A . H 4 HOH 9 318 318 HOH HOH A . H 4 HOH 10 319 319 HOH HOH A . H 4 HOH 11 320 320 HOH HOH A . H 4 HOH 12 321 321 HOH HOH A . H 4 HOH 13 322 322 HOH HOH A . H 4 HOH 14 323 323 HOH HOH A . H 4 HOH 15 328 328 HOH HOH A . H 4 HOH 16 330 330 HOH HOH A . H 4 HOH 17 337 337 HOH HOH A . H 4 HOH 18 338 338 HOH HOH A . H 4 HOH 19 341 341 HOH HOH A . H 4 HOH 20 342 342 HOH HOH A . H 4 HOH 21 343 343 HOH HOH A . H 4 HOH 22 344 344 HOH HOH A . H 4 HOH 23 352 352 HOH HOH A . H 4 HOH 24 355 355 HOH HOH A . H 4 HOH 25 356 356 HOH HOH A . H 4 HOH 26 358 358 HOH HOH A . H 4 HOH 27 360 360 HOH HOH A . H 4 HOH 28 362 362 HOH HOH A . H 4 HOH 29 364 364 HOH HOH A . H 4 HOH 30 365 365 HOH HOH A . H 4 HOH 31 367 367 HOH HOH A . H 4 HOH 32 368 368 HOH HOH A . H 4 HOH 33 373 373 HOH HOH A . H 4 HOH 34 374 374 HOH HOH A . H 4 HOH 35 375 375 HOH HOH A . H 4 HOH 36 377 377 HOH HOH A . H 4 HOH 37 378 378 HOH HOH A . H 4 HOH 38 385 385 HOH HOH A . H 4 HOH 39 388 388 HOH HOH A . I 4 HOH 1 301 301 HOH HOH B . I 4 HOH 2 302 302 HOH HOH B . I 4 HOH 3 303 303 HOH HOH B . I 4 HOH 4 304 304 HOH HOH B . I 4 HOH 5 305 305 HOH HOH B . I 4 HOH 6 306 306 HOH HOH B . I 4 HOH 7 307 307 HOH HOH B . I 4 HOH 8 311 311 HOH HOH B . I 4 HOH 9 314 314 HOH HOH B . I 4 HOH 10 317 317 HOH HOH B . I 4 HOH 11 324 324 HOH HOH B . I 4 HOH 12 325 325 HOH HOH B . I 4 HOH 13 326 326 HOH HOH B . I 4 HOH 14 329 329 HOH HOH B . I 4 HOH 15 332 332 HOH HOH B . I 4 HOH 16 333 333 HOH HOH B . I 4 HOH 17 334 334 HOH HOH B . I 4 HOH 18 336 336 HOH HOH B . I 4 HOH 19 339 339 HOH HOH B . I 4 HOH 20 340 340 HOH HOH B . I 4 HOH 21 345 345 HOH HOH B . I 4 HOH 22 346 346 HOH HOH B . I 4 HOH 23 347 347 HOH HOH B . I 4 HOH 24 348 348 HOH HOH B . I 4 HOH 25 349 349 HOH HOH B . I 4 HOH 26 350 350 HOH HOH B . I 4 HOH 27 351 351 HOH HOH B . I 4 HOH 28 353 353 HOH HOH B . I 4 HOH 29 357 357 HOH HOH B . I 4 HOH 30 359 359 HOH HOH B . I 4 HOH 31 361 361 HOH HOH B . I 4 HOH 32 363 363 HOH HOH B . I 4 HOH 33 366 366 HOH HOH B . I 4 HOH 34 369 369 HOH HOH B . I 4 HOH 35 370 370 HOH HOH B . I 4 HOH 36 371 371 HOH HOH B . I 4 HOH 37 372 372 HOH HOH B . I 4 HOH 38 376 376 HOH HOH B . I 4 HOH 39 379 379 HOH HOH B . I 4 HOH 40 380 380 HOH HOH B . I 4 HOH 41 381 381 HOH HOH B . I 4 HOH 42 383 383 HOH HOH B . I 4 HOH 43 384 384 HOH HOH B . I 4 HOH 44 386 386 HOH HOH B . I 4 HOH 45 387 387 HOH HOH B . I 4 HOH 46 389 389 HOH HOH B . I 4 HOH 47 390 390 HOH HOH B . I 4 HOH 48 391 391 HOH HOH B . I 4 HOH 49 392 392 HOH HOH B . I 4 HOH 50 393 393 HOH HOH B . I 4 HOH 51 394 394 HOH HOH B . I 4 HOH 52 395 395 HOH HOH B . # _struct_site_keywords.site_id 1 _struct_site_keywords.text BIS-INTERCALATION # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-12-13 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.pdbx_synonyms' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 CNS refinement 1.1 ? 4 HKL-2000 'data reduction' . ? 5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A C 1 ? A C 1 2 1 Y 1 B C 24 ? B C 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 RIO O1 O N N 114 RIO C1 C N N 115 RIO C2 C N R 116 RIO O2 O N N 117 RIO C3 C N S 118 RIO O3 O N N 119 RIO C4 C N R 120 RIO C5 C N S 121 RIO O4 O N N 122 RIO C6 C N R 123 RIO N1 N N N 124 RIO C7 C N N 125 RIO C8 C N S 126 RIO N2 N N N 127 RIO C9 C N R 128 RIO O5 O N N 129 RIO C10 C N R 130 RIO O6 O N N 131 RIO C11 C N R 132 RIO C12 C N N 133 RIO N3 N N N 134 RIO C13 C N S 135 RIO O7 O N N 136 RIO C14 C N R 137 RIO O8 O N N 138 RIO C15 C N R 139 RIO N4 N N N 140 RIO C16 C N R 141 RIO O9 O N N 142 RIO C17 C N S 143 RIO O10 O N N 144 RIO HO1 H N N 145 RIO H1 H N N 146 RIO H1A H N N 147 RIO H2 H N N 148 RIO H3 H N N 149 RIO H4 H N N 150 RIO H5 H N N 151 RIO HO4 H N N 152 RIO H6 H N N 153 RIO HN1 H N N 154 RIO HN1A H N N 155 RIO H7 H N N 156 RIO H7A H N N 157 RIO H8 H N N 158 RIO HN2 H N N 159 RIO HN2A H N N 160 RIO H9 H N N 161 RIO H10 H N N 162 RIO H11 H N N 163 RIO H12 H N N 164 RIO H12A H N N 165 RIO HN3 H N N 166 RIO HN3A H N N 167 RIO H13 H N N 168 RIO HO7 H N N 169 RIO H14 H N N 170 RIO HO8 H N N 171 RIO H15 H N N 172 RIO HN4 H N N 173 RIO HN4A H N N 174 RIO H16 H N N 175 RIO HO9 H N N 176 RIO H17 H N N 177 RIO HO10 H N N 178 SO4 S S N N 179 SO4 O1 O N N 180 SO4 O2 O N N 181 SO4 O3 O N N 182 SO4 O4 O N N 183 U OP3 O N N 184 U P P N N 185 U OP1 O N N 186 U OP2 O N N 187 U "O5'" O N N 188 U "C5'" C N N 189 U "C4'" C N R 190 U "O4'" O N N 191 U "C3'" C N S 192 U "O3'" O N N 193 U "C2'" C N R 194 U "O2'" O N N 195 U "C1'" C N R 196 U N1 N N N 197 U C2 C N N 198 U O2 O N N 199 U N3 N N N 200 U C4 C N N 201 U O4 O N N 202 U C5 C N N 203 U C6 C N N 204 U HOP3 H N N 205 U HOP2 H N N 206 U "H5'" H N N 207 U "H5''" H N N 208 U "H4'" H N N 209 U "H3'" H N N 210 U "HO3'" H N N 211 U "H2'" H N N 212 U "HO2'" H N N 213 U "H1'" H N N 214 U H3 H N N 215 U H5 H N N 216 U H6 H N N 217 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 RIO O1 C1 sing N N 118 RIO C1 C2 sing N N 119 RIO C2 O2 sing N N 120 RIO C2 C17 sing N N 121 RIO O2 C3 sing N N 122 RIO C3 O3 sing N N 123 RIO C3 C16 sing N N 124 RIO O3 C4 sing N N 125 RIO C4 C5 sing N N 126 RIO C4 C9 sing N N 127 RIO C5 O4 sing N N 128 RIO C5 C6 sing N N 129 RIO C6 N1 sing N N 130 RIO C6 C7 sing N N 131 RIO C7 C8 sing N N 132 RIO C8 N2 sing N N 133 RIO C8 C9 sing N N 134 RIO C9 O5 sing N N 135 RIO O5 C10 sing N N 136 RIO C10 O6 sing N N 137 RIO C10 C15 sing N N 138 RIO O6 C11 sing N N 139 RIO C11 C12 sing N N 140 RIO C11 C13 sing N N 141 RIO C12 N3 sing N N 142 RIO C13 O7 sing N N 143 RIO C13 C14 sing N N 144 RIO C14 O8 sing N N 145 RIO C14 C15 sing N N 146 RIO C15 N4 sing N N 147 RIO C16 O9 sing N N 148 RIO C16 C17 sing N N 149 RIO C17 O10 sing N N 150 RIO O1 HO1 sing N N 151 RIO C1 H1 sing N N 152 RIO C1 H1A sing N N 153 RIO C2 H2 sing N N 154 RIO C3 H3 sing N N 155 RIO C4 H4 sing N N 156 RIO C5 H5 sing N N 157 RIO O4 HO4 sing N N 158 RIO C6 H6 sing N N 159 RIO N1 HN1 sing N N 160 RIO N1 HN1A sing N N 161 RIO C7 H7 sing N N 162 RIO C7 H7A sing N N 163 RIO C8 H8 sing N N 164 RIO N2 HN2 sing N N 165 RIO N2 HN2A sing N N 166 RIO C9 H9 sing N N 167 RIO C10 H10 sing N N 168 RIO C11 H11 sing N N 169 RIO C12 H12 sing N N 170 RIO C12 H12A sing N N 171 RIO N3 HN3 sing N N 172 RIO N3 HN3A sing N N 173 RIO C13 H13 sing N N 174 RIO O7 HO7 sing N N 175 RIO C14 H14 sing N N 176 RIO O8 HO8 sing N N 177 RIO C15 H15 sing N N 178 RIO N4 HN4 sing N N 179 RIO N4 HN4A sing N N 180 RIO C16 H16 sing N N 181 RIO O9 HO9 sing N N 182 RIO C17 H17 sing N N 183 RIO O10 HO10 sing N N 184 SO4 S O1 doub N N 185 SO4 S O2 doub N N 186 SO4 S O3 sing N N 187 SO4 S O4 sing N N 188 U OP3 P sing N N 189 U OP3 HOP3 sing N N 190 U P OP1 doub N N 191 U P OP2 sing N N 192 U P "O5'" sing N N 193 U OP2 HOP2 sing N N 194 U "O5'" "C5'" sing N N 195 U "C5'" "C4'" sing N N 196 U "C5'" "H5'" sing N N 197 U "C5'" "H5''" sing N N 198 U "C4'" "O4'" sing N N 199 U "C4'" "C3'" sing N N 200 U "C4'" "H4'" sing N N 201 U "O4'" "C1'" sing N N 202 U "C3'" "O3'" sing N N 203 U "C3'" "C2'" sing N N 204 U "C3'" "H3'" sing N N 205 U "O3'" "HO3'" sing N N 206 U "C2'" "O2'" sing N N 207 U "C2'" "C1'" sing N N 208 U "C2'" "H2'" sing N N 209 U "O2'" "HO2'" sing N N 210 U "C1'" N1 sing N N 211 U "C1'" "H1'" sing N N 212 U N1 C2 sing N N 213 U N1 C6 sing N N 214 U C2 O2 doub N N 215 U C2 N3 sing N N 216 U N3 C4 sing N N 217 U N3 H3 sing N N 218 U C4 O4 doub N N 219 U C4 C5 sing N N 220 U C5 C6 doub N N 221 U C5 H5 sing N N 222 U C6 H6 sing N N 223 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2ET5 'double helix' 2ET5 'a-form double helix' 2ET5 'mismatched base pair' 2ET5 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 B C 22 1_555 -0.148 0.007 -0.211 -3.832 -0.556 1.048 1 A_G2:C45_B A 2 ? B 45 ? 19 1 1 A C 3 1_555 B G 21 1_555 -0.076 -0.071 0.298 -3.519 -9.743 2.794 2 A_C3:G44_B A 3 ? B 44 ? 19 1 1 A G 4 1_555 B C 20 1_555 -0.130 -0.064 0.116 -2.058 -7.914 0.433 3 A_G4:C43_B A 4 ? B 43 ? 19 1 1 A U 5 1_555 B U 19 1_555 -2.656 -1.106 -0.463 1.243 -20.058 -24.426 4 A_U5:U42_B A 5 ? B 42 ? ? ? 1 A C 6 1_555 B G 18 1_555 0.511 -0.233 -0.155 -1.602 -1.554 -0.761 5 A_C6:G41_B A 6 ? B 41 ? 19 1 1 A C 8 1_555 B G 15 1_555 0.298 -0.238 0.164 5.342 -15.593 -1.892 6 A_C8:G38_B A 8 ? B 38 ? 19 1 1 A A 9 1_555 B U 14 1_555 0.031 -0.136 0.529 5.192 -14.866 3.092 7 A_A9:U37_B A 9 ? B 37 ? 20 1 1 A C 10 1_555 B G 13 1_555 0.261 -0.122 0.463 4.075 -22.025 4.706 8 A_C10:G36_B A 10 ? B 36 ? 19 1 1 A C 11 1_555 B G 12 1_555 0.209 -0.164 0.449 -0.917 -14.089 -0.117 9 A_C11:G35_B A 11 ? B 35 ? 19 1 1 A G 12 1_555 B C 11 1_555 -0.238 0.029 0.194 -8.474 -15.487 1.675 10 A_G12:C34_B A 12 ? B 34 ? 19 1 1 A G 13 1_555 B C 10 1_555 -0.330 -0.230 0.250 -5.564 -17.671 1.749 11 A_G13:C33_B A 13 ? B 33 ? 19 1 1 A U 14 1_555 B A 9 1_555 -0.076 -0.083 0.275 -0.207 -16.744 4.285 12 A_U14:A32_B A 14 ? B 32 ? 20 1 1 A G 15 1_555 B C 8 1_555 -0.320 -0.167 -0.030 -8.055 -19.494 1.982 13 A_G15:C31_B A 15 ? B 31 ? 19 1 1 A G 18 1_555 B C 6 1_555 -0.620 -0.439 -0.141 -1.327 -3.731 1.128 14 A_G18:C29_B A 18 ? B 29 ? 19 1 1 A U 19 1_555 B U 5 1_555 2.352 -1.140 -0.327 -6.426 -10.588 -24.457 15 A_U19:U28_B A 19 ? B 28 ? ? ? 1 A C 20 1_555 B G 4 1_555 0.124 -0.236 0.363 -2.837 -5.370 -0.776 16 A_C20:G27_B A 20 ? B 27 ? 19 1 1 A G 21 1_555 B C 3 1_555 -0.225 -0.190 -0.004 -2.085 -7.957 0.397 17 A_G21:C26_B A 21 ? B 26 ? 19 1 1 A C 22 1_555 B G 2 1_555 0.231 -0.238 0.102 -4.624 2.326 4.103 18 A_C22:G25_B A 22 ? B 25 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 B C 22 1_555 A C 3 1_555 B G 21 1_555 -0.326 -1.670 3.403 -4.463 2.077 31.174 -3.469 -0.256 3.301 3.835 8.239 31.551 1 AA_G2C3:G44C45_BB A 2 ? B 45 ? A 3 ? B 44 ? 1 A C 3 1_555 B G 21 1_555 A G 4 1_555 B C 20 1_555 -0.110 -1.489 3.125 3.345 7.286 33.051 -3.604 0.674 2.721 12.578 -5.774 33.983 2 AA_C3G4:C43G44_BB A 3 ? B 44 ? A 4 ? B 43 ? 1 A G 4 1_555 B C 20 1_555 A U 5 1_555 B U 19 1_555 -0.466 -2.303 3.099 4.439 2.153 21.220 -6.854 2.799 2.701 5.746 -11.850 21.780 3 AA_G4U5:U42C43_BB A 4 ? B 43 ? A 5 ? B 42 ? 1 A U 5 1_555 B U 19 1_555 A C 6 1_555 B G 18 1_555 2.619 -2.330 3.361 3.033 2.540 44.840 -3.281 -3.140 3.392 3.322 -3.967 45.006 4 AA_U5C6:G41U42_BB A 5 ? B 42 ? A 6 ? B 41 ? 1 A C 6 1_555 B G 18 1_555 A C 8 1_555 B G 15 1_555 1.229 -3.963 6.238 -9.591 21.515 75.102 -4.202 -1.447 4.972 17.250 7.690 78.187 5 AA_C6C8:G38G41_BB A 6 ? B 41 ? A 8 ? B 38 ? 1 A C 8 1_555 B G 15 1_555 A A 9 1_555 B U 14 1_555 0.484 -1.757 2.907 -1.462 12.102 31.910 -4.519 -1.010 2.098 21.076 2.546 34.103 6 AA_C8A9:U37G38_BB A 8 ? B 38 ? A 9 ? B 37 ? 1 A A 9 1_555 B U 14 1_555 A C 10 1_555 B G 13 1_555 0.699 -1.534 3.171 4.034 1.716 34.950 -2.783 -0.573 3.153 2.844 -6.684 35.215 7 AA_A9C10:G36U37_BB A 9 ? B 37 ? A 10 ? B 36 ? 1 A C 10 1_555 B G 13 1_555 A C 11 1_555 B G 12 1_555 -0.964 -1.792 3.236 -1.421 7.707 31.115 -4.537 1.507 2.764 14.090 2.598 32.063 8 AA_C10C11:G35G36_BB A 10 ? B 36 ? A 11 ? B 35 ? 1 A C 11 1_555 B G 12 1_555 A G 12 1_555 B C 11 1_555 0.076 -1.264 3.291 1.301 11.587 33.245 -3.726 0.057 2.714 19.520 -2.192 35.175 9 AA_C11G12:C34G35_BB A 11 ? B 35 ? A 12 ? B 34 ? 1 A G 12 1_555 B C 11 1_555 A G 13 1_555 B C 10 1_555 0.633 -1.428 3.138 0.510 5.613 29.218 -3.863 -1.135 2.830 10.998 -1.000 29.745 10 AA_G12G13:C33C34_BB A 12 ? B 34 ? A 13 ? B 33 ? 1 A G 13 1_555 B C 10 1_555 A U 14 1_555 B A 9 1_555 -0.018 -1.180 3.050 0.409 3.426 34.187 -2.487 0.089 2.921 5.809 -0.693 34.356 11 AA_G13U14:A32C33_BB A 13 ? B 33 ? A 14 ? B 32 ? 1 A U 14 1_555 B A 9 1_555 A G 15 1_555 B C 8 1_555 -0.130 -1.589 3.258 2.163 12.178 32.634 -4.344 0.516 2.509 20.765 -3.689 34.840 12 AA_U14G15:C31A32_BB A 14 ? B 32 ? A 15 ? B 31 ? 1 A G 15 1_555 B C 8 1_555 A G 18 1_555 B C 6 1_555 -1.122 -4.057 6.140 9.544 24.739 78.210 -4.170 1.271 4.772 19.111 -7.373 81.896 13 AA_G15G18:C29C31_BB A 15 ? B 31 ? A 18 ? B 29 ? 1 A G 18 1_555 B C 6 1_555 A U 19 1_555 B U 5 1_555 -2.365 -2.519 3.481 -1.997 0.404 40.893 -3.650 3.146 3.564 0.578 2.857 40.941 14 AA_G18U19:U28C29_BB A 18 ? B 29 ? A 19 ? B 28 ? 1 A U 19 1_555 B U 5 1_555 A C 20 1_555 B G 4 1_555 0.584 -2.371 2.988 -4.492 6.705 24.093 -6.945 -2.368 2.119 15.515 10.394 25.390 15 AA_U19C20:G27U28_BB A 19 ? B 28 ? A 20 ? B 27 ? 1 A C 20 1_555 B G 4 1_555 A G 21 1_555 B C 3 1_555 0.168 -2.104 3.121 0.786 5.882 27.850 -5.476 -0.182 2.634 12.048 -1.611 28.463 16 AA_C20G21:C26G27_BB A 20 ? B 27 ? A 21 ? B 26 ? 1 A G 21 1_555 B C 3 1_555 A C 22 1_555 B G 2 1_555 0.646 -2.443 3.380 1.031 4.101 31.540 -5.198 -0.991 3.066 7.502 -1.886 31.815 17 AA_G21C22:G25C26_BB A 21 ? B 26 ? A 22 ? B 25 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 RIBOSTAMYCIN RIO 3 'SULFATE ION' SO4 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1J7T _pdbx_initial_refinement_model.details 'PDB Entry: 1J7T' #