HEADER TRANSCRIPTION 27-OCT-05 2ETH TITLE CRYSTAL STRUCTURE OF A MARR-LIKE TRANSCRIPTIONAL REGULATOR (TM0816) TITLE 2 FROM THERMOTOGA MARITIMA AT 2.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, PUTATIVE, MAR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM0816; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MARR FAMILY, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2ETH 1 REMARK SEQADV LINK REVDAT 6 13-JUL-11 2ETH 1 VERSN REVDAT 5 23-MAR-11 2ETH 1 HEADER TITLE KEYWDS REVDAT 4 24-FEB-09 2ETH 1 VERSN REVDAT 3 22-NOV-05 2ETH 1 REMARK REVDAT 2 15-NOV-05 2ETH 1 REMARK JRNL TITLE REVDAT 1 08-NOV-05 2ETH 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR, PUTATIVE, JRNL TITL 2 MAR FAMILY (TM0816) FROM THERMOTOGA MARITIMA AT 2.50 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.1 REMARK 3 NUMBER OF REFLECTIONS : 13786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 732 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 527 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 44.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 19 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2142 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.19000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : -0.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.367 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.258 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.175 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.641 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2181 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1456 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2946 ; 1.562 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3556 ; 0.975 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 7.050 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;35.283 ;23.457 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 378 ;19.126 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;23.667 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 353 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2408 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 463 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 528 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1437 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1139 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1170 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 54 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.297 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 46 ; 0.305 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1448 ; 0.929 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 567 ; 0.198 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2259 ; 1.507 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 823 ; 2.256 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 686 ; 3.496 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 5 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 17 5 REMARK 3 1 B 2 B 17 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 96 ; 0.170 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 100 ; 0.560 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 96 ; 0.560 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 100 ; 1.050 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 31 A 54 5 REMARK 3 1 B 31 B 54 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 142 ; 0.140 ; 0.500 REMARK 3 LOOSE POSITIONAL 2 A (A): 177 ; 0.320 ; 5.000 REMARK 3 MEDIUM THERMAL 2 A (A**2): 142 ; 1.120 ; 2.000 REMARK 3 LOOSE THERMAL 2 A (A**2): 177 ; 1.860 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 55 A 63 1 REMARK 3 1 B 55 B 63 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 A (A): 96 ; 0.040 ; 0.050 REMARK 3 TIGHT THERMAL 3 A (A**2): 96 ; 0.580 ; 0.500 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 64 A 78 5 REMARK 3 1 B 64 B 78 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 4 A (A): 89 ; 0.150 ; 0.500 REMARK 3 LOOSE POSITIONAL 4 A (A): 99 ; 0.560 ; 5.000 REMARK 3 MEDIUM THERMAL 4 A (A**2): 89 ; 1.280 ; 2.000 REMARK 3 LOOSE THERMAL 4 A (A**2): 99 ; 2.340 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 91 A 140 5 REMARK 3 1 B 91 B 140 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 5 A (A): 295 ; 0.240 ; 0.500 REMARK 3 LOOSE POSITIONAL 5 A (A): 326 ; 0.410 ; 5.000 REMARK 3 MEDIUM THERMAL 5 A (A**2): 295 ; 1.290 ; 2.000 REMARK 3 LOOSE THERMAL 5 A (A**2): 326 ; 2.060 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8254 11.3633 8.1080 REMARK 3 T TENSOR REMARK 3 T11: 0.0034 T22: 0.4233 REMARK 3 T33: 0.0971 T12: -0.2456 REMARK 3 T13: 0.0525 T23: -0.1590 REMARK 3 L TENSOR REMARK 3 L11: 7.9811 L22: 4.5122 REMARK 3 L33: 13.6875 L12: -4.5478 REMARK 3 L13: 6.8038 L23: -3.0521 REMARK 3 S TENSOR REMARK 3 S11: -0.0752 S12: 1.1422 S13: -0.0325 REMARK 3 S21: -0.3583 S22: -0.0440 S23: 0.2782 REMARK 3 S31: -0.8348 S32: 1.0715 S33: 0.1191 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1969 19.2402 24.9892 REMARK 3 T TENSOR REMARK 3 T11: -0.1937 T22: -0.0943 REMARK 3 T33: -0.1312 T12: -0.0389 REMARK 3 T13: 0.0000 T23: -0.0433 REMARK 3 L TENSOR REMARK 3 L11: 0.6223 L22: 1.2853 REMARK 3 L33: 4.9359 L12: -0.4964 REMARK 3 L13: -0.9975 L23: 0.6316 REMARK 3 S TENSOR REMARK 3 S11: -0.1222 S12: -0.1392 S13: 0.0826 REMARK 3 S21: 0.1161 S22: 0.0499 S23: 0.1373 REMARK 3 S31: -0.0804 S32: -0.2332 S33: 0.0723 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 23 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2733 21.9614 16.6476 REMARK 3 T TENSOR REMARK 3 T11: -0.0388 T22: 0.0613 REMARK 3 T33: -0.1674 T12: -0.1467 REMARK 3 T13: -0.0331 T23: 0.0654 REMARK 3 L TENSOR REMARK 3 L11: 13.0976 L22: 14.6885 REMARK 3 L33: 10.8819 L12: -5.4347 REMARK 3 L13: 1.1762 L23: -4.0813 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: 0.7093 S13: 0.7019 REMARK 3 S21: -1.0184 S22: 0.1763 S23: 0.4512 REMARK 3 S31: -0.1170 S32: -1.0201 S33: -0.2013 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 24 B 140 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5966 11.6534 11.3381 REMARK 3 T TENSOR REMARK 3 T11: -0.0233 T22: 0.0008 REMARK 3 T33: 0.0491 T12: -0.0709 REMARK 3 T13: -0.0305 T23: 0.0769 REMARK 3 L TENSOR REMARK 3 L11: 3.4559 L22: 1.0243 REMARK 3 L33: 0.7729 L12: 1.6504 REMARK 3 L13: -1.3881 L23: -0.4374 REMARK 3 S TENSOR REMARK 3 S11: 0.0500 S12: 0.0073 S13: 0.2219 REMARK 3 S21: -0.0065 S22: 0.0686 S23: 0.3270 REMARK 3 S31: 0.1437 S32: -0.1276 S33: -0.1186 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: (1) HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. (2) THE NOMINAL RESOLUTION IS 2.50 A WITH 1303 REMARK 3 OBSERVED REFLECTIONS BETWEEN 2.50-2.30 (35.8% COMPLETE FOR THIS REMARK 3 SHELL) INCLUDED IN THE REFINEMENT. (3) DISORDERED REGIONS, REMARK 3 INCLUDING B19-B24 AND B55-63, WERE DIFFICULT TO MODEL. NCS WAS REMARK 3 USED TO MODEL THESE REGIONS. (4) UNKNOWN DENSITIES NEAR A131 AND REMARK 3 B58 COULD NOT BE MODELED. (5) A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 4 REMARK 4 2ETH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000035072. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97932 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14519 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.63700 REMARK 200 R SYM FOR SHELL (I) : 0.63700 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M (NH4)2SO4, 0.2M NACL, 0.1M REMARK 280 CACODYLATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.42600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.21950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.42600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.21950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 51.67753 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 65.14504 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 141 REMARK 465 ARG A 142 REMARK 465 MSE B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 141 REMARK 465 ARG B 142 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 4 CG CD1 CD2 REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 LEU A 10 CG CD1 CD2 REMARK 470 ARG A 16 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 GLU A 26 OE1 OE2 REMARK 470 ILE A 27 CG1 CG2 CD1 REMARK 470 LYS A 48 CE NZ REMARK 470 LYS A 50 CD CE NZ REMARK 470 GLU A 54 CD OE1 OE2 REMARK 470 THR A 58 OG1 CG2 REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 SER A 61 OG REMARK 470 ASP A 68 OD1 OD2 REMARK 470 LYS A 72 CE NZ REMARK 470 ARG A 85 CD NE CZ NH1 NH2 REMARK 470 ARG A 86 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 97 NZ REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 GLU A 116 OE1 OE2 REMARK 470 LYS A 117 NZ REMARK 470 GLU A 120 CD OE1 OE2 REMARK 470 LYS A 124 CD CE NZ REMARK 470 GLU A 135 CD OE1 OE2 REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 5 CG CD OE1 OE2 REMARK 470 ARG B 16 CZ NH1 NH2 REMARK 470 ASN B 24 CG OD1 ND2 REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 GLU B 26 CG CD OE1 OE2 REMARK 470 ILE B 27 CG1 CG2 CD1 REMARK 470 LYS B 48 CE NZ REMARK 470 LYS B 50 CD CE NZ REMARK 470 GLU B 54 CD OE1 OE2 REMARK 470 THR B 58 OG1 CG2 REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 SER B 61 OG REMARK 470 LYS B 72 CD CE NZ REMARK 470 ARG B 86 CZ NH1 NH2 REMARK 470 GLU B 94 CG CD OE1 OE2 REMARK 470 GLU B 98 CG CD OE1 OE2 REMARK 470 GLU B 102 CD OE1 OE2 REMARK 470 GLU B 108 CG CD OE1 OE2 REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 GLU B 120 CD OE1 OE2 REMARK 470 LYS B 124 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 132 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 1 120.20 70.13 REMARK 500 SER A 57 37.96 20.44 REMARK 500 ARG A 85 -17.08 75.94 REMARK 500 ARG A 139 -71.06 -59.11 REMARK 500 PRO B 22 -173.12 -54.59 REMARK 500 LEU B 56 26.03 -79.02 REMARK 500 SER B 57 33.53 23.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 139 GLU A 140 -144.46 REMARK 500 ARG B 139 GLU B 140 -143.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 143 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282686 RELATED DB: TARGETDB DBREF 2ETH A 1 142 UNP Q9WZS3 Q9WZS3_THEMA 1 142 DBREF 2ETH B 1 142 UNP Q9WZS3 Q9WZS3_THEMA 1 142 SEQADV 2ETH MSE A -11 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH GLY A -10 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH SER A -9 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH ASP A -8 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH LYS A -7 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH ILE A -6 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH HIS A -5 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH HIS A -4 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH HIS A -3 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH HIS A -2 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH HIS A -1 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH HIS A 0 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH MSE A 1 UNP Q9WZS3 MET 1 MODIFIED RESIDUE SEQADV 2ETH MSE A 15 UNP Q9WZS3 MET 15 MODIFIED RESIDUE SEQADV 2ETH MSE A 30 UNP Q9WZS3 MET 30 MODIFIED RESIDUE SEQADV 2ETH MSE A 49 UNP Q9WZS3 MET 49 MODIFIED RESIDUE SEQADV 2ETH MSE A 80 UNP Q9WZS3 MET 80 MODIFIED RESIDUE SEQADV 2ETH MSE A 133 UNP Q9WZS3 MET 133 MODIFIED RESIDUE SEQADV 2ETH MSE B -11 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH GLY B -10 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH SER B -9 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH ASP B -8 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH LYS B -7 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH ILE B -6 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH HIS B -5 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH HIS B -4 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH HIS B -3 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH HIS B -2 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH HIS B -1 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH HIS B 0 UNP Q9WZS3 EXPRESSION TAG SEQADV 2ETH MSE B 1 UNP Q9WZS3 MET 1 MODIFIED RESIDUE SEQADV 2ETH MSE B 15 UNP Q9WZS3 MET 15 MODIFIED RESIDUE SEQADV 2ETH MSE B 30 UNP Q9WZS3 MET 30 MODIFIED RESIDUE SEQADV 2ETH MSE B 49 UNP Q9WZS3 MET 49 MODIFIED RESIDUE SEQADV 2ETH MSE B 80 UNP Q9WZS3 MET 80 MODIFIED RESIDUE SEQADV 2ETH MSE B 133 UNP Q9WZS3 MET 133 MODIFIED RESIDUE SEQRES 1 A 154 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 154 ASP ALA LEU GLU ILE PHE LYS THR LEU PHE SER LEU VAL SEQRES 3 A 154 MSE ARG PHE SER SER TYR LEU PRO SER ASN GLU GLU ILE SEQRES 4 A 154 SER ASP MSE LYS THR THR GLU LEU TYR ALA PHE LEU TYR SEQRES 5 A 154 VAL ALA LEU PHE GLY PRO LYS LYS MSE LYS GLU ILE ALA SEQRES 6 A 154 GLU PHE LEU SER THR THR LYS SER ASN VAL THR ASN VAL SEQRES 7 A 154 VAL ASP SER LEU GLU LYS ARG GLY LEU VAL VAL ARG GLU SEQRES 8 A 154 MSE ASP PRO VAL ASP ARG ARG THR TYR ARG VAL VAL LEU SEQRES 9 A 154 THR GLU LYS GLY LYS GLU ILE PHE GLY GLU ILE LEU SER SEQRES 10 A 154 ASN PHE GLU SER LEU LEU LYS SER VAL LEU GLU LYS PHE SEQRES 11 A 154 SER GLU GLU ASP PHE LYS VAL VAL SER GLU GLY PHE ASN SEQRES 12 A 154 ARG MSE VAL GLU ALA LEU SER ARG GLU GLY ARG SEQRES 1 B 154 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 B 154 ASP ALA LEU GLU ILE PHE LYS THR LEU PHE SER LEU VAL SEQRES 3 B 154 MSE ARG PHE SER SER TYR LEU PRO SER ASN GLU GLU ILE SEQRES 4 B 154 SER ASP MSE LYS THR THR GLU LEU TYR ALA PHE LEU TYR SEQRES 5 B 154 VAL ALA LEU PHE GLY PRO LYS LYS MSE LYS GLU ILE ALA SEQRES 6 B 154 GLU PHE LEU SER THR THR LYS SER ASN VAL THR ASN VAL SEQRES 7 B 154 VAL ASP SER LEU GLU LYS ARG GLY LEU VAL VAL ARG GLU SEQRES 8 B 154 MSE ASP PRO VAL ASP ARG ARG THR TYR ARG VAL VAL LEU SEQRES 9 B 154 THR GLU LYS GLY LYS GLU ILE PHE GLY GLU ILE LEU SER SEQRES 10 B 154 ASN PHE GLU SER LEU LEU LYS SER VAL LEU GLU LYS PHE SEQRES 11 B 154 SER GLU GLU ASP PHE LYS VAL VAL SER GLU GLY PHE ASN SEQRES 12 B 154 ARG MSE VAL GLU ALA LEU SER ARG GLU GLY ARG MODRES 2ETH MSE A 1 MET SELENOMETHIONINE MODRES 2ETH MSE A 15 MET SELENOMETHIONINE MODRES 2ETH MSE A 30 MET SELENOMETHIONINE MODRES 2ETH MSE A 49 MET SELENOMETHIONINE MODRES 2ETH MSE A 80 MET SELENOMETHIONINE MODRES 2ETH MSE A 133 MET SELENOMETHIONINE MODRES 2ETH MSE B 1 MET SELENOMETHIONINE MODRES 2ETH MSE B 15 MET SELENOMETHIONINE MODRES 2ETH MSE B 30 MET SELENOMETHIONINE MODRES 2ETH MSE B 49 MET SELENOMETHIONINE MODRES 2ETH MSE B 80 MET SELENOMETHIONINE MODRES 2ETH MSE B 133 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 15 8 HET MSE A 30 8 HET MSE A 49 8 HET MSE A 80 8 HET MSE A 133 8 HET MSE B 1 8 HET MSE B 15 8 HET MSE B 30 8 HET MSE B 49 8 HET MSE B 80 8 HET MSE B 133 8 HET CL A 143 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 CL CL 1- FORMUL 4 HOH *47(H2 O) HELIX 1 1 ASP A 2 SER A 19 1 18 HELIX 2 2 ASN A 24 MSE A 30 1 7 HELIX 3 3 LYS A 31 GLY A 45 1 15 HELIX 4 4 LYS A 48 LEU A 56 1 9 HELIX 5 5 THR A 59 ARG A 73 1 15 HELIX 6 6 THR A 93 GLU A 116 1 24 HELIX 7 7 SER A 119 ARG A 139 1 21 HELIX 8 8 ASP B 2 LEU B 21 1 20 HELIX 9 9 LYS B 31 GLY B 45 1 15 HELIX 10 10 LYS B 48 LEU B 56 1 9 HELIX 11 11 THR B 59 ARG B 73 1 15 HELIX 12 12 THR B 93 LYS B 117 1 25 HELIX 13 13 SER B 119 ARG B 139 1 21 SHEET 1 A 2 VAL A 76 MSE A 80 0 SHEET 2 A 2 TYR A 88 LEU A 92 -1 O ARG A 89 N GLU A 79 SHEET 1 B 2 VAL B 76 ASP B 81 0 SHEET 2 B 2 ARG B 86 LEU B 92 -1 O TYR B 88 N GLU B 79 LINK C HIS A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ASP A 2 1555 1555 1.33 LINK C VAL A 14 N MSE A 15 1555 1555 1.33 LINK C MSE A 15 N ARG A 16 1555 1555 1.35 LINK C ASP A 29 N MSE A 30 1555 1555 1.34 LINK C MSE A 30 N LYS A 31 1555 1555 1.34 LINK C LYS A 48 N MSE A 49 1555 1555 1.31 LINK C MSE A 49 N LYS A 50 1555 1555 1.34 LINK C GLU A 79 N MSE A 80 1555 1555 1.32 LINK C MSE A 80 N ASP A 81 1555 1555 1.32 LINK C ARG A 132 N MSE A 133 1555 1555 1.32 LINK C MSE A 133 N VAL A 134 1555 1555 1.33 LINK C HIS B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N ASP B 2 1555 1555 1.34 LINK C VAL B 14 N MSE B 15 1555 1555 1.34 LINK C MSE B 15 N ARG B 16 1555 1555 1.34 LINK C ASP B 29 N MSE B 30 1555 1555 1.33 LINK C MSE B 30 N LYS B 31 1555 1555 1.33 LINK C LYS B 48 N MSE B 49 1555 1555 1.33 LINK C MSE B 49 N LYS B 50 1555 1555 1.34 LINK C GLU B 79 N MSE B 80 1555 1555 1.33 LINK C MSE B 80 N ASP B 81 1555 1555 1.33 LINK C ARG B 132 N MSE B 133 1555 1555 1.32 LINK C MSE B 133 N VAL B 134 1555 1555 1.33 SITE 1 AC1 1 VAL A 126 CRYST1 98.852 58.439 80.432 90.00 125.91 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010120 0.000000 0.007330 0.00000 SCALE2 0.000000 0.017110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015350 0.00000