HEADER HYDROLASE 27-OCT-05 2ETJ TITLE CRYSTAL STRUCTURE OF RIBONUCLEASE HII (EC 3.1.26.4) (RNASE HII) TITLE 2 (TM0915) FROM THERMOTOGA MARITIMA AT 1.74 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE HII; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNASE HII; COMPND 5 EC: 3.1.26.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: RNHB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: HK100 KEYWDS TM0915, RIBONUCLEASE HII (EC 3.1.26.4) (RNASE HII), STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 25-JAN-23 2ETJ 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2ETJ 1 VERSN REVDAT 2 24-FEB-09 2ETJ 1 VERSN REVDAT 1 08-NOV-05 2ETJ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF RIBONUCLEASE HII (EC 3.1.26.4) (RNASE JRNL TITL 2 HII) (TM0915) FROM THERMOTOGA MARITIMA AT 1.74 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 22167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1194 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1650 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1614 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.952 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1674 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1176 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2246 ; 1.572 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2867 ; 0.959 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 209 ; 6.118 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;36.639 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 303 ;15.465 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;15.538 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 263 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1818 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 335 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 360 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1269 ; 0.203 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 793 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 878 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 104 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.087 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.310 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.263 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.294 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1092 ; 2.513 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 431 ; 0.608 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1680 ; 3.216 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 656 ; 6.114 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 566 ; 8.167 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 221 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3853 8.1884 3.9748 REMARK 3 T TENSOR REMARK 3 T11: -0.0846 T22: -0.0070 REMARK 3 T33: -0.0677 T12: 0.0078 REMARK 3 T13: -0.0147 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 1.7344 L22: 0.7987 REMARK 3 L33: 0.9833 L12: 0.0144 REMARK 3 L13: -0.5758 L23: 0.4210 REMARK 3 S TENSOR REMARK 3 S11: -0.0456 S12: -0.0483 S13: -0.1762 REMARK 3 S21: 0.0504 S22: -0.0161 S23: 0.0593 REMARK 3 S31: 0.0455 S32: -0.0402 S33: 0.0617 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ETJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000035073. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797, 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23391 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 18.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.46900 REMARK 200 R SYM FOR SHELL (I) : 0.46900 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 20.0% PEG-3350, NO BUFFER REMARK 280 , PH 5.8, VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.43100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.86200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 42 REMARK 465 ILE A 43 REMARK 465 ASN A 44 REMARK 465 ASP A 45 REMARK 465 SER A 46 REMARK 465 LYS A 47 REMARK 465 GLN A 48 REMARK 465 LEU A 49 REMARK 465 SER A 50 REMARK 465 PRO A 51 REMARK 465 LYS A 222 REMARK 465 SER A 223 REMARK 465 VAL A 224 REMARK 465 VAL A 225 REMARK 465 PHE A 226 REMARK 465 ARG A 227 REMARK 465 LYS A 228 REMARK 465 GLU A 229 REMARK 465 ARG A 230 REMARK 465 THR A 231 REMARK 465 ASN A 232 REMARK 465 HIS A 233 REMARK 465 ASN A 234 REMARK 465 LEU A 235 REMARK 465 PRO A 236 REMARK 465 LEU A 237 REMARK 465 PHE A 238 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CE NZ REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 GLU A 55 OE1 OE2 REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 59 CG OD1 OD2 REMARK 470 MSE A 62 CG SE CE REMARK 470 GLU A 95 CD OE1 OE2 REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 LYS A 122 CE NZ REMARK 470 LYS A 128 CE NZ REMARK 470 LYS A 159 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 81 159.17 87.88 REMARK 500 LYS A 159 -60.55 -98.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 239 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 18 OD1 REMARK 620 2 ASP A 107 OD2 95.2 REMARK 620 3 HOH A 395 O 89.4 80.2 REMARK 620 4 HOH A 396 O 177.2 85.9 88.3 REMARK 620 5 HOH A 397 O 84.5 93.5 170.8 98.0 REMARK 620 6 HOH A 398 O 93.9 170.9 99.9 85.0 87.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 242 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 244 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 245 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282784 RELATED DB: TARGETDB DBREF 2ETJ A 1 238 UNP Q9X017 RNH2_THEMA 1 238 SEQADV 2ETJ MSE A -11 UNP Q9X017 EXPRESSION TAG SEQADV 2ETJ GLY A -10 UNP Q9X017 EXPRESSION TAG SEQADV 2ETJ SER A -9 UNP Q9X017 EXPRESSION TAG SEQADV 2ETJ ASP A -8 UNP Q9X017 EXPRESSION TAG SEQADV 2ETJ LYS A -7 UNP Q9X017 EXPRESSION TAG SEQADV 2ETJ ILE A -6 UNP Q9X017 EXPRESSION TAG SEQADV 2ETJ HIS A -5 UNP Q9X017 EXPRESSION TAG SEQADV 2ETJ HIS A -4 UNP Q9X017 EXPRESSION TAG SEQADV 2ETJ HIS A -3 UNP Q9X017 EXPRESSION TAG SEQADV 2ETJ HIS A -2 UNP Q9X017 EXPRESSION TAG SEQADV 2ETJ HIS A -1 UNP Q9X017 EXPRESSION TAG SEQADV 2ETJ HIS A 0 UNP Q9X017 EXPRESSION TAG SEQADV 2ETJ MSE A 1 UNP Q9X017 MET 1 MODIFIED RESIDUE SEQADV 2ETJ MSE A 62 UNP Q9X017 MET 62 MODIFIED RESIDUE SEQADV 2ETJ MSE A 90 UNP Q9X017 MET 90 MODIFIED RESIDUE SEQADV 2ETJ MSE A 145 UNP Q9X017 MET 145 MODIFIED RESIDUE SEQADV 2ETJ MSE A 151 UNP Q9X017 MET 151 MODIFIED RESIDUE SEQRES 1 A 250 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 250 GLY ILE ASP GLU LEU TYR LYS LYS GLU PHE GLY ILE VAL SEQRES 3 A 250 ALA GLY VAL ASP GLU ALA GLY ARG GLY CYS LEU ALA GLY SEQRES 4 A 250 PRO VAL VAL ALA ALA ALA VAL VAL LEU GLU LYS GLU ILE SEQRES 5 A 250 GLU GLY ILE ASN ASP SER LYS GLN LEU SER PRO ALA LYS SEQRES 6 A 250 ARG GLU ARG LEU LEU ASP GLU ILE MSE GLU LYS ALA ALA SEQRES 7 A 250 VAL GLY ILE GLY ILE ALA SER PRO GLU GLU ILE ASP LEU SEQRES 8 A 250 TYR ASN ILE PHE ASN ALA THR LYS LEU ALA MSE ASN ARG SEQRES 9 A 250 ALA LEU GLU ASN LEU SER VAL LYS PRO SER PHE VAL LEU SEQRES 10 A 250 VAL ASP GLY LYS GLY ILE GLU LEU SER VAL PRO GLY THR SEQRES 11 A 250 CYS LEU VAL LYS GLY ASP GLN LYS SER LYS LEU ILE GLY SEQRES 12 A 250 ALA ALA SER ILE VAL ALA LYS VAL PHE ARG ASP ARG LEU SEQRES 13 A 250 MSE SER GLU PHE HIS ARG MSE TYR PRO GLN PHE SER PHE SEQRES 14 A 250 HIS LYS HIS LYS GLY TYR ALA THR LYS GLU HIS LEU ASN SEQRES 15 A 250 GLU ILE ARG LYS ASN GLY VAL LEU PRO ILE HIS ARG LEU SEQRES 16 A 250 SER PHE GLU PRO VAL LEU GLU LEU LEU THR ASP ASP LEU SEQRES 17 A 250 LEU ARG GLU PHE PHE GLU LYS GLY LEU ILE SER GLU ASN SEQRES 18 A 250 ARG PHE GLU ARG ILE LEU ASN LEU LEU GLY ALA ARG LYS SEQRES 19 A 250 SER VAL VAL PHE ARG LYS GLU ARG THR ASN HIS ASN LEU SEQRES 20 A 250 PRO LEU PHE MODRES 2ETJ MSE A 1 MET SELENOMETHIONINE MODRES 2ETJ MSE A 62 MET SELENOMETHIONINE MODRES 2ETJ MSE A 90 MET SELENOMETHIONINE MODRES 2ETJ MSE A 145 MET SELENOMETHIONINE MODRES 2ETJ MSE A 151 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 62 5 HET MSE A 90 8 HET MSE A 145 8 HET MSE A 151 8 HET MG A 239 1 HET CL A 240 1 HET EDO A 241 4 HET EDO A 242 4 HET EDO A 243 4 HET EDO A 244 4 HET EDO A 245 4 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 CL CL 1- FORMUL 4 EDO 5(C2 H6 O2) FORMUL 9 HOH *161(H2 O) HELIX 1 1 GLY A 2 LYS A 8 5 7 HELIX 2 2 ALA A 52 LYS A 64 1 13 HELIX 3 3 SER A 73 ASN A 81 1 9 HELIX 4 4 ASN A 81 LEU A 97 1 17 HELIX 5 5 LYS A 122 SER A 127 1 6 HELIX 6 6 SER A 127 TYR A 152 1 26 HELIX 7 7 SER A 156 LYS A 161 1 6 HELIX 8 8 THR A 165 GLY A 176 1 12 HELIX 9 9 PHE A 185 GLU A 190 1 6 HELIX 10 10 THR A 193 LYS A 203 1 11 HELIX 11 11 SER A 207 ALA A 220 1 14 SHEET 1 A 5 ALA A 65 ALA A 72 0 SHEET 2 A 5 VAL A 29 LEU A 36 -1 N ALA A 31 O GLY A 70 SHEET 3 A 5 VAL A 14 ALA A 20 -1 N ALA A 20 O VAL A 30 SHEET 4 A 5 PHE A 103 ASP A 107 1 O LEU A 105 N ALA A 15 SHEET 5 A 5 GLY A 117 LEU A 120 1 O LEU A 120 N VAL A 106 LINK C MSE A 1 N GLY A 2 1555 1555 1.33 LINK C ILE A 61 N MSE A 62 1555 1555 1.32 LINK C MSE A 62 N GLU A 63 1555 1555 1.34 LINK C ALA A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N ASN A 91 1555 1555 1.31 LINK C LEU A 144 N MSE A 145 1555 1555 1.32 LINK C MSE A 145 N SER A 146 1555 1555 1.33 LINK C ARG A 150 N MSE A 151 1555 1555 1.34 LINK C MSE A 151 N TYR A 152 1555 1555 1.33 LINK OD1 ASP A 18 MG MG A 239 1555 1555 2.12 LINK OD2 ASP A 107 MG MG A 239 1555 1555 2.01 LINK MG MG A 239 O HOH A 395 1555 1555 2.19 LINK MG MG A 239 O HOH A 396 1555 1555 2.08 LINK MG MG A 239 O HOH A 397 1555 1555 1.88 LINK MG MG A 239 O HOH A 398 1555 1555 1.93 SITE 1 AC1 6 ASP A 18 ASP A 107 HOH A 395 HOH A 396 SITE 2 AC1 6 HOH A 397 HOH A 398 SITE 1 AC2 3 ILE A 206 SER A 207 ARG A 210 SITE 1 AC3 5 LYS A 9 ILE A 71 GLU A 76 ARG A 92 SITE 2 AC3 5 HOH A 318 SITE 1 AC4 7 PHE A 83 LYS A 87 GLY A 110 ARG A 198 SITE 2 AC4 7 HOH A 292 HOH A 339 HOH A 358 SITE 1 AC5 7 VAL A 104 ILE A 111 LEU A 113 VAL A 115 SITE 2 AC5 7 GLY A 117 HOH A 316 HOH A 364 SITE 1 AC6 3 SER A 184 GLU A 202 ARG A 213 SITE 1 AC7 5 LYS A 166 LEU A 169 ASN A 170 ARG A 173 SITE 2 AC7 5 HOH A 357 CRYST1 51.821 51.821 76.293 90.00 90.00 120.00 P 31 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019300 0.011140 0.000000 0.00000 SCALE2 0.000000 0.022280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013110 0.00000 HETATM 1 N MSE A 1 -0.455 0.564 21.535 1.00 23.77 N HETATM 2 CA MSE A 1 -1.035 0.818 22.907 1.00 29.51 C HETATM 3 C MSE A 1 -2.494 1.167 22.864 1.00 26.14 C HETATM 4 O MSE A 1 -3.176 1.187 23.919 1.00 25.57 O HETATM 5 CB MSE A 1 -0.327 1.973 23.600 1.00 27.66 C HETATM 6 CG MSE A 1 0.949 1.593 24.235 1.00 34.06 C HETATM 7 SE MSE A 1 1.789 3.163 25.049 0.75 44.97 SE HETATM 8 CE MSE A 1 1.128 2.864 26.807 1.00 15.87 C