HEADER TRANSFERASE 28-OCT-05 2EU8 TITLE CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF BACILLUS SUBTILIS TITLE 2 ADENYLATE KINASE (Q199R) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATP-AMP TRANSPHOSPHORYLASE, AK, SUPEROXIDE-INDUCIBLE PROTEIN COMPND 5 16, SOI16; COMPND 6 EC: 2.7.4.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: ADK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS ADENYLATE KINASE, THERMOSTABILITY, POINT MUTANT, IN VIVO EVOLUTION, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.CHEN,Y.SHAMOO REVDAT 5 23-AUG-23 2EU8 1 REMARK REVDAT 4 20-OCT-21 2EU8 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 2EU8 1 VERSN REVDAT 2 25-JUL-06 2EU8 1 JRNL REVDAT 1 27-JUN-06 2EU8 0 JRNL AUTH R.COUNAGO,S.CHEN,Y.SHAMOO JRNL TITL IN VIVO MOLECULAR EVOLUTION REVEALS BIOPHYSICAL ORIGINS OF JRNL TITL 2 ORGANISMAL FITNESS. JRNL REF MOL.CELL V. 22 441 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 16713575 JRNL DOI 10.1016/J.MOLCEL.2006.04.012 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 35105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1747 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 0.89 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE : 0.2513 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 176 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3366 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 119 REMARK 3 SOLVENT ATOMS : 657 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65900 REMARK 3 B22 (A**2) : -0.31300 REMARK 3 B33 (A**2) : 0.97200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.76900 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.08 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.235 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.879 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 34.99 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : AP5_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EU8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000035098. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : D*TREK 8.0SSI REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48747 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 37.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.840 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.47 REMARK 200 R MERGE FOR SHELL (I) : 0.09600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1ZIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.75MM PROTEIN, PEG1500, CALCIUM REMARK 280 CHLORIDE, CHES, PH 9.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.14K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.57000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 212 O HOH B 1475 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 142 65.64 -165.12 REMARK 500 ASP A 163 41.50 -88.55 REMARK 500 GLN A 198 52.98 -98.87 REMARK 500 PRO B 60 151.70 -47.28 REMARK 500 ASN B 142 70.05 -163.06 REMARK 500 GLN B 198 52.81 -95.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 109 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 220 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 130 SG REMARK 620 2 CYS A 133 SG 110.2 REMARK 620 3 CYS A 150 SG 106.3 112.8 REMARK 620 4 ASP A 153 OD2 117.2 99.8 110.6 REMARK 620 5 ASP A 153 OD1 82.7 150.8 86.8 51.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1223 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 190 O REMARK 620 2 HOH A1281 O 68.8 REMARK 620 3 HOH A1302 O 93.8 98.7 REMARK 620 4 ALA B 161 O 150.7 136.9 94.9 REMARK 620 5 ASN B 164 OD1 100.0 84.6 166.0 74.0 REMARK 620 6 HOH B1245 O 73.6 139.0 99.7 77.3 86.3 REMARK 620 7 HOH B1256 O 140.0 73.5 78.9 69.3 89.1 146.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1223 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AP5 A1218 O2G REMARK 620 2 AP5 A1218 O2B 77.0 REMARK 620 3 HOH A1228 O 87.3 82.0 REMARK 620 4 HOH A1325 O 86.7 155.5 79.0 REMARK 620 5 HOH A1427 O 173.5 101.3 86.3 92.9 REMARK 620 6 HOH A1509 O 91.8 79.4 161.1 119.8 94.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 221 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 130 SG REMARK 620 2 CYS B 133 SG 109.4 REMARK 620 3 CYS B 150 SG 106.2 115.9 REMARK 620 4 ASP B 153 OD2 114.9 100.6 110.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1222 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AP5 B1219 O2G REMARK 620 2 AP5 B1219 O2B 79.5 REMARK 620 3 HOH B1238 O 88.9 161.8 REMARK 620 4 HOH B1239 O 174.2 99.2 90.9 REMARK 620 5 HOH B1437 O 117.8 133.1 64.9 67.1 REMARK 620 6 HOH B1439 O 90.5 83.3 82.8 83.7 134.9 REMARK 620 7 HOH B1440 O 85.5 80.8 112.5 99.9 59.6 164.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AP5 A 1218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AP5 B 1219 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZIN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WILD-TYPE ADENYLATE KINASE FROM GEOBACILLUS REMARK 900 STEAROTHERMOPHILUS WITH BOUND AP5A REMARK 900 RELATED ID: 1P3J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WILD-TYPE ADENYLATE KINASE FROM BACILLUS REMARK 900 SUBTILIS DBREF 2EU8 A 1 216 UNP P16304 KAD_BACSU 1 216 DBREF 2EU8 B 1 216 UNP P16304 KAD_BACSU 1 216 SEQADV 2EU8 ARG A 199 UNP P16304 GLN 199 ENGINEERED MUTATION SEQADV 2EU8 ARG B 199 UNP P16304 GLN 199 ENGINEERED MUTATION SEQRES 1 A 216 MET ASN LEU VAL LEU MET GLY LEU PRO GLY ALA GLY LYS SEQRES 2 A 216 GLY THR GLN GLY GLU ARG ILE VAL GLU ASP TYR GLY ILE SEQRES 3 A 216 PRO HIS ILE SER THR GLY ASP MET PHE ARG ALA ALA MET SEQRES 4 A 216 LYS GLU GLU THR PRO LEU GLY LEU GLU ALA LYS SER TYR SEQRES 5 A 216 ILE ASP LYS GLY GLU LEU VAL PRO ASP GLU VAL THR ILE SEQRES 6 A 216 GLY ILE VAL LYS GLU ARG LEU GLY LYS ASP ASP CYS GLU SEQRES 7 A 216 ARG GLY PHE LEU LEU ASP GLY PHE PRO ARG THR VAL ALA SEQRES 8 A 216 GLN ALA GLU ALA LEU GLU GLU ILE LEU GLU GLU TYR GLY SEQRES 9 A 216 LYS PRO ILE ASP TYR VAL ILE ASN ILE GLU VAL ASP LYS SEQRES 10 A 216 ASP VAL LEU MET GLU ARG LEU THR GLY ARG ARG ILE CYS SEQRES 11 A 216 SER VAL CYS GLY THR THR TYR HIS LEU VAL PHE ASN PRO SEQRES 12 A 216 PRO LYS THR PRO GLY ILE CYS ASP LYS ASP GLY GLY GLU SEQRES 13 A 216 LEU TYR GLN ARG ALA ASP ASP ASN GLU GLU THR VAL SER SEQRES 14 A 216 LYS ARG LEU GLU VAL ASN MET LYS GLN THR GLN PRO LEU SEQRES 15 A 216 LEU ASP PHE TYR SER GLU LYS GLY TYR LEU ALA ASN VAL SEQRES 16 A 216 ASN GLY GLN ARG ASP ILE GLN ASP VAL TYR ALA ASP VAL SEQRES 17 A 216 LYS ASP LEU LEU GLY GLY LEU LYS SEQRES 1 B 216 MET ASN LEU VAL LEU MET GLY LEU PRO GLY ALA GLY LYS SEQRES 2 B 216 GLY THR GLN GLY GLU ARG ILE VAL GLU ASP TYR GLY ILE SEQRES 3 B 216 PRO HIS ILE SER THR GLY ASP MET PHE ARG ALA ALA MET SEQRES 4 B 216 LYS GLU GLU THR PRO LEU GLY LEU GLU ALA LYS SER TYR SEQRES 5 B 216 ILE ASP LYS GLY GLU LEU VAL PRO ASP GLU VAL THR ILE SEQRES 6 B 216 GLY ILE VAL LYS GLU ARG LEU GLY LYS ASP ASP CYS GLU SEQRES 7 B 216 ARG GLY PHE LEU LEU ASP GLY PHE PRO ARG THR VAL ALA SEQRES 8 B 216 GLN ALA GLU ALA LEU GLU GLU ILE LEU GLU GLU TYR GLY SEQRES 9 B 216 LYS PRO ILE ASP TYR VAL ILE ASN ILE GLU VAL ASP LYS SEQRES 10 B 216 ASP VAL LEU MET GLU ARG LEU THR GLY ARG ARG ILE CYS SEQRES 11 B 216 SER VAL CYS GLY THR THR TYR HIS LEU VAL PHE ASN PRO SEQRES 12 B 216 PRO LYS THR PRO GLY ILE CYS ASP LYS ASP GLY GLY GLU SEQRES 13 B 216 LEU TYR GLN ARG ALA ASP ASP ASN GLU GLU THR VAL SER SEQRES 14 B 216 LYS ARG LEU GLU VAL ASN MET LYS GLN THR GLN PRO LEU SEQRES 15 B 216 LEU ASP PHE TYR SER GLU LYS GLY TYR LEU ALA ASN VAL SEQRES 16 B 216 ASN GLY GLN ARG ASP ILE GLN ASP VAL TYR ALA ASP VAL SEQRES 17 B 216 LYS ASP LEU LEU GLY GLY LEU LYS HET ZN A 220 1 HET MG A1223 1 HET AP5 A1218 57 HET ZN B 221 1 HET MG B1222 1 HET CA B1223 1 HET AP5 B1219 57 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM AP5 BIS(ADENOSINE)-5'-PENTAPHOSPHATE HETNAM CA CALCIUM ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 AP5 2(C20 H29 N10 O22 P5) FORMUL 8 CA CA 2+ FORMUL 10 HOH *657(H2 O) HELIX 1 1 GLY A 12 GLY A 25 1 14 HELIX 2 2 THR A 31 GLU A 42 1 12 HELIX 3 3 THR A 43 GLY A 56 1 14 HELIX 4 4 PRO A 60 GLY A 73 1 14 HELIX 5 5 LYS A 74 GLU A 78 5 5 HELIX 6 6 THR A 89 GLY A 104 1 16 HELIX 7 7 ASP A 116 GLY A 126 1 11 HELIX 8 8 ASN A 164 GLY A 190 1 27 HELIX 9 9 ASP A 200 ASP A 210 1 11 HELIX 10 10 GLY B 12 GLY B 25 1 14 HELIX 11 11 THR B 31 GLU B 41 1 11 HELIX 12 12 THR B 43 GLY B 56 1 14 HELIX 13 13 PRO B 60 GLY B 73 1 14 HELIX 14 14 LYS B 74 GLU B 78 5 5 HELIX 15 15 THR B 89 GLY B 104 1 16 HELIX 16 16 ASP B 116 ASP B 118 5 3 HELIX 17 17 VAL B 119 GLY B 126 1 8 HELIX 18 18 ARG B 160 ASP B 163 5 4 HELIX 19 19 ASN B 164 GLY B 190 1 27 HELIX 20 20 ASP B 200 GLY B 213 1 14 HELIX 21 21 GLY B 214 LYS B 216 5 3 SHEET 1 A 5 HIS A 28 SER A 30 0 SHEET 2 A 5 PHE A 81 ASP A 84 1 O LEU A 82 N ILE A 29 SHEET 3 A 5 ASN A 2 MET A 6 1 N LEU A 3 O LEU A 83 SHEET 4 A 5 TYR A 109 GLU A 114 1 O ILE A 111 N VAL A 4 SHEET 5 A 5 LEU A 192 ASN A 196 1 O ALA A 193 N ASN A 112 SHEET 1 B 3 THR A 136 HIS A 138 0 SHEET 2 B 3 ARG A 127 CYS A 130 -1 N ARG A 128 O TYR A 137 SHEET 3 B 3 LEU A 157 TYR A 158 -1 O TYR A 158 N ILE A 129 SHEET 1 C 5 HIS B 28 SER B 30 0 SHEET 2 C 5 PHE B 81 ASP B 84 1 O LEU B 82 N ILE B 29 SHEET 3 C 5 ASN B 2 MET B 6 1 N LEU B 3 O LEU B 83 SHEET 4 C 5 TYR B 109 GLU B 114 1 O ILE B 111 N VAL B 4 SHEET 5 C 5 LEU B 192 ASN B 196 1 O ALA B 193 N VAL B 110 SHEET 1 D 3 THR B 136 HIS B 138 0 SHEET 2 D 3 ARG B 127 CYS B 130 -1 N ARG B 128 O TYR B 137 SHEET 3 D 3 LEU B 157 TYR B 158 -1 O TYR B 158 N ILE B 129 LINK SG CYS A 130 ZN ZN A 220 1555 1555 2.34 LINK SG CYS A 133 ZN ZN A 220 1555 1555 2.42 LINK SG CYS A 150 ZN ZN A 220 1555 1555 2.36 LINK OD2 ASP A 153 ZN ZN A 220 1555 1555 2.16 LINK OD1 ASP A 153 ZN ZN A 220 1555 1555 2.76 LINK O GLY A 190 CA CA B1223 1555 1555 2.64 LINK O2G AP5 A1218 MG MG A1223 1555 1555 2.50 LINK O2B AP5 A1218 MG MG A1223 1555 1555 2.47 LINK MG MG A1223 O HOH A1228 1555 1555 2.49 LINK MG MG A1223 O HOH A1325 1555 1555 2.39 LINK MG MG A1223 O HOH A1427 1555 1555 2.30 LINK MG MG A1223 O HOH A1509 1555 1555 2.46 LINK O HOH A1281 CA CA B1223 1555 1555 2.74 LINK O HOH A1302 CA CA B1223 1555 1555 2.75 LINK SG CYS B 130 ZN ZN B 221 1555 1555 2.37 LINK SG CYS B 133 ZN ZN B 221 1555 1555 2.41 LINK SG CYS B 150 ZN ZN B 221 1555 1555 2.35 LINK OD2 ASP B 153 ZN ZN B 221 1555 1555 2.22 LINK O ALA B 161 CA CA B1223 1555 1555 2.57 LINK OD1 ASN B 164 CA CA B1223 1555 1555 2.63 LINK O2G AP5 B1219 MG MG B1222 1555 1555 2.42 LINK O2B AP5 B1219 MG MG B1222 1555 1555 2.48 LINK MG MG B1222 O HOH B1238 1555 1555 2.33 LINK MG MG B1222 O HOH B1239 1555 1555 2.30 LINK MG MG B1222 O HOH B1437 1555 1555 3.03 LINK MG MG B1222 O HOH B1439 1555 1555 2.52 LINK MG MG B1222 O HOH B1440 1555 1555 2.50 LINK CA CA B1223 O HOH B1245 1555 1555 2.72 LINK CA CA B1223 O HOH B1256 1555 1555 2.78 CISPEP 1 PHE A 86 PRO A 87 0 0.04 CISPEP 2 PHE B 86 PRO B 87 0 -0.16 SITE 1 AC1 4 CYS A 130 CYS A 133 CYS A 150 ASP A 153 SITE 1 AC2 4 CYS B 130 CYS B 133 CYS B 150 ASP B 153 SITE 1 AC3 6 AP5 B1219 HOH B1238 HOH B1239 HOH B1437 SITE 2 AC3 6 HOH B1439 HOH B1440 SITE 1 AC4 5 AP5 A1218 HOH A1228 HOH A1325 HOH A1427 SITE 2 AC4 5 HOH A1509 SITE 1 AC5 7 GLY A 190 HOH A1281 HOH A1302 ALA B 161 SITE 2 AC5 7 ASN B 164 HOH B1245 HOH B1256 SITE 1 AC6 38 PRO A 9 GLY A 10 ALA A 11 GLY A 12 SITE 2 AC6 38 LYS A 13 GLY A 14 THR A 15 THR A 31 SITE 3 AC6 38 GLY A 32 ARG A 36 ILE A 53 GLU A 57 SITE 4 AC6 38 VAL A 59 GLY A 85 PHE A 86 ARG A 88 SITE 5 AC6 38 GLN A 92 ARG A 123 ARG A 127 THR A 136 SITE 6 AC6 38 TYR A 137 HIS A 138 PHE A 141 ARG A 160 SITE 7 AC6 38 ARG A 171 ARG A 199 ILE A 201 MG A1223 SITE 8 AC6 38 HOH A1227 HOH A1228 HOH A1229 HOH A1230 SITE 9 AC6 38 HOH A1249 HOH A1273 HOH A1311 HOH A1318 SITE 10 AC6 38 HOH A1325 HOH A1509 SITE 1 AC7 40 PRO B 9 GLY B 10 ALA B 11 GLY B 12 SITE 2 AC7 40 LYS B 13 GLY B 14 THR B 15 THR B 31 SITE 3 AC7 40 GLY B 32 PHE B 35 ARG B 36 ILE B 53 SITE 4 AC7 40 GLU B 57 VAL B 59 THR B 64 GLY B 85 SITE 5 AC7 40 PHE B 86 ARG B 88 GLN B 92 ARG B 123 SITE 6 AC7 40 ARG B 127 THR B 136 TYR B 137 HIS B 138 SITE 7 AC7 40 PHE B 141 ARG B 160 ARG B 171 ARG B 199 SITE 8 AC7 40 ILE B 201 MG B1222 HOH B1226 HOH B1231 SITE 9 AC7 40 HOH B1235 HOH B1238 HOH B1276 HOH B1290 SITE 10 AC7 40 HOH B1314 HOH B1439 HOH B1440 HOH B1441 CRYST1 34.690 75.140 77.350 90.00 98.13 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028827 0.000000 0.004118 0.00000 SCALE2 0.000000 0.013308 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013059 0.00000