HEADER HYDROLASE 31-OCT-05 2EVR TITLE CRYSTAL STRUCTURE OF A PUTATIVE GAMMA-D-GLUTAMYL-L-DIAMINO ACID TITLE 2 ENDOPEPTIDASE (NPUN_R0659) FROM NOSTOC PUNCTIFORME PCC 73102 AT 1.60 TITLE 3 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: COG0791: CELL WALL-ASSOCIATED HYDROLASES (INVASION- COMPND 3 ASSOCIATED PROTEINS); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC PUNCTIFORME; SOURCE 3 ORGANISM_TAXID: 63737; SOURCE 4 STRAIN: PCC 73102; SOURCE 5 GENE: 53686717; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PUTATIVE GAMMA-D-GLUTAMYL-L-DIAMINO ACID ENDOPEPTIDASE, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 2EVR 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 2EVR 1 VERSN REVDAT 4 28-JUL-10 2EVR 1 HEADER TITLE KEYWDS REVDAT 3 10-MAR-09 2EVR 1 JRNL REVDAT 2 24-FEB-09 2EVR 1 VERSN REVDAT 1 22-NOV-05 2EVR 0 JRNL AUTH Q.XU,S.SUDEK,D.MCMULLAN,M.D.MILLER,B.GEIERSTANGER,D.H.JONES, JRNL AUTH 2 S.S.KRISHNA,G.SPRAGGON,B.BURSALAY,P.ABDUBEK,C.ACOSTA, JRNL AUTH 3 E.AMBING,T.ASTAKHOVA,H.L.AXELROD,D.CARLTON,J.CARUTHERS, JRNL AUTH 4 H.J.CHIU,T.CLAYTON,M.C.DELLER,L.DUAN,Y.ELIAS,M.A.ELSLIGER, JRNL AUTH 5 J.FEUERHELM,S.K.GRZECHNIK,J.HALE,G.WON HAN,J.HAUGEN, JRNL AUTH 6 L.JAROSZEWSKI,K.K.JIN,H.E.KLOCK,M.W.KNUTH,P.KOZBIAL,A.KUMAR, JRNL AUTH 7 D.MARCIANO,A.T.MORSE,E.NIGOGHOSSIAN,L.OKACH,S.OOMMACHEN, JRNL AUTH 8 J.PAULSEN,R.REYES,C.L.RIFE,C.V.TROUT,H.VAN DEN BEDEM, JRNL AUTH 9 D.WEEKES,A.WHITE,G.WOLF,C.ZUBIETA,K.O.HODGSON,J.WOOLEY, JRNL AUTH10 A.M.DEACON,A.GODZIK,S.A.LESLEY,I.A.WILSON JRNL TITL STRUCTURAL BASIS OF MUREIN PEPTIDE SPECIFICITY OF A JRNL TITL 2 GAMMA-D-GLUTAMYL-L-DIAMINO ACID ENDOPEPTIDASE. JRNL REF STRUCTURE V. 17 303 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19217401 JRNL DOI 10.1016/J.STR.2008.12.008 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 48970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2624 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3466 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 212 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1714 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.060 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.435 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1905 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1661 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2614 ; 1.508 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3887 ; 0.818 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 259 ; 5.766 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;35.234 ;24.839 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 298 ;11.752 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;15.317 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 281 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2222 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 402 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 336 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1691 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 957 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1192 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 214 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.231 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.267 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.241 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.189 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1171 ; 1.817 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 482 ; 0.498 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1891 ; 3.153 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 765 ; 4.409 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 706 ; 6.192 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5811 20.4375 46.6320 REMARK 3 T TENSOR REMARK 3 T11: 0.0207 T22: -0.0500 REMARK 3 T33: -0.0518 T12: 0.0229 REMARK 3 T13: -0.0212 T23: -0.0409 REMARK 3 L TENSOR REMARK 3 L11: 2.5040 L22: 0.4152 REMARK 3 L33: 1.0822 L12: -0.0337 REMARK 3 L13: 0.6070 L23: 0.0957 REMARK 3 S TENSOR REMARK 3 S11: -0.0533 S12: -0.2022 S13: 0.1257 REMARK 3 S21: 0.2303 S22: 0.0386 S23: -0.0724 REMARK 3 S31: -0.0269 S32: -0.0029 S33: 0.0147 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 234 REMARK 3 ORIGIN FOR THE GROUP (A): 32.5041 -0.2780 36.4309 REMARK 3 T TENSOR REMARK 3 T11: 0.0018 T22: -0.0526 REMARK 3 T33: -0.0435 T12: 0.0081 REMARK 3 T13: -0.0304 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 1.4912 L22: 1.8081 REMARK 3 L33: 0.6580 L12: -0.1298 REMARK 3 L13: 0.1426 L23: 0.5367 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: -0.0469 S13: -0.1182 REMARK 3 S21: 0.2586 S22: 0.0300 S23: -0.1091 REMARK 3 S31: 0.1542 S32: 0.0093 S33: -0.0695 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.7 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. TENTATIVE MODELS WERE BUILT FOR THE FOLLOWING REMARK 3 AREAS WITH POOR DENSITIES: N-TERMINAL A13; C-TERMINAL A233-234. REMARK 3 4. THERE ARE SOME UNUSUAL DENSITIES FEATURES NEAR A114, A116 REMARK 3 AREA THAT WERE LEFT UNINTERPRETED. REMARK 4 REMARK 4 2EVR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000035151. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0163, 0.9797 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51615 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 28.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.310 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.33 REMARK 200 R MERGE FOR SHELL (I) : 0.82100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M NACL, 10.0% PEG-6000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.90500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.45250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.35750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.90500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.35750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 23.45250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 46.90500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 256 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 VAL A 2 REMARK 465 ARG A 3 REMARK 465 LEU A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 ALA A 7 REMARK 465 GLU A 8 REMARK 465 VAL A 9 REMARK 465 GLN A 10 REMARK 465 ASN A 11 REMARK 465 PRO A 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 ASP A 74 OD1 OD2 REMARK 470 LYS A 106 CE NZ REMARK 470 LYS A 192 CE NZ REMARK 470 GLU A 206 CD OE1 OE2 REMARK 470 GLN A 232 CD OE1 NE2 REMARK 470 ARG A 233 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 310 O HOH A 370 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 362 O HOH A 470 7555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 19 CB CYS A 19 SG -0.106 REMARK 500 TRP A 116 CB TRP A 116 CG -0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 14 126.06 -175.56 REMARK 500 LEU A 14 127.82 -176.85 REMARK 500 ASN A 52 -112.75 51.71 REMARK 500 LEU A 181 -82.82 -112.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 236 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 99 OE1 REMARK 620 2 GLU A 99 OE2 48.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 241 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 359701 RELATED DB: TARGETDB DBREF 2EVR A 1 234 UNP B2J9B4 B2J9B4_NOSP7 1 234 SEQADV 2EVR MSE A -11 UNP B2J9B4 EXPRESSION TAG SEQADV 2EVR GLY A -10 UNP B2J9B4 EXPRESSION TAG SEQADV 2EVR SER A -9 UNP B2J9B4 EXPRESSION TAG SEQADV 2EVR ASP A -8 UNP B2J9B4 EXPRESSION TAG SEQADV 2EVR LYS A -7 UNP B2J9B4 EXPRESSION TAG SEQADV 2EVR ILE A -6 UNP B2J9B4 EXPRESSION TAG SEQADV 2EVR HIS A -5 UNP B2J9B4 EXPRESSION TAG SEQADV 2EVR HIS A -4 UNP B2J9B4 EXPRESSION TAG SEQADV 2EVR HIS A -3 UNP B2J9B4 EXPRESSION TAG SEQADV 2EVR HIS A -2 UNP B2J9B4 EXPRESSION TAG SEQADV 2EVR HIS A -1 UNP B2J9B4 EXPRESSION TAG SEQADV 2EVR HIS A 0 UNP B2J9B4 EXPRESSION TAG SEQRES 1 A 246 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 246 VAL ARG LEU SER GLU ALA GLU VAL GLN ASN PRO LYS LEU SEQRES 3 A 246 GLY GLU TYR GLN CYS LEU ALA ASP LEU ASN LEU PHE ASP SEQRES 4 A 246 SER PRO GLU CYS THR ARG LEU ALA THR GLN SER ALA SER SEQRES 5 A 246 GLY ARG HIS LEU TRP VAL THR SER ASN HIS GLN ASN LEU SEQRES 6 A 246 ALA VAL GLU VAL TYR LEU CYS GLU ASP ASP TYR PRO GLY SEQRES 7 A 246 TRP LEU SER LEU SER ASP PHE ASP SER LEU GLN PRO ALA SEQRES 8 A 246 THR VAL PRO TYR GLN ALA ALA THR PHE SER GLU SER GLU SEQRES 9 A 246 ILE LYS LYS LEU LEU ALA GLU VAL ILE ALA PHE THR GLN SEQRES 10 A 246 LYS ALA MSE GLN GLN SER ASN TYR TYR LEU TRP GLY GLY SEQRES 11 A 246 THR VAL GLY PRO ASN TYR ASP CYS SER GLY LEU MSE GLN SEQRES 12 A 246 ALA ALA PHE ALA SER VAL GLY ILE TRP LEU PRO ARG ASP SEQRES 13 A 246 ALA TYR GLN GLN GLU GLY PHE THR GLN PRO ILE THR ILE SEQRES 14 A 246 ALA GLU LEU VAL ALA GLY ASP LEU VAL PHE PHE GLY THR SEQRES 15 A 246 SER GLN LYS ALA THR HIS VAL GLY LEU TYR LEU ALA ASP SEQRES 16 A 246 GLY TYR TYR ILE HIS SER SER GLY LYS ASP GLN GLY ARG SEQRES 17 A 246 ASP GLY ILE GLY ILE ASP ILE LEU SER GLU GLN GLY ASP SEQRES 18 A 246 ALA VAL SER LEU SER TYR TYR GLN GLN LEU ARG GLY ALA SEQRES 19 A 246 GLY ARG VAL PHE LYS SER TYR GLU PRO GLN ARG ARG MODRES 2EVR MSE A 108 MET SELENOMETHIONINE MODRES 2EVR MSE A 130 MET SELENOMETHIONINE HET MSE A 108 8 HET MSE A 130 8 HET CL A 235 1 HET NA A 236 1 HET EDO A 237 4 HET EDO A 238 4 HET EDO A 239 4 HET EDO A 240 4 HET EDO A 241 4 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 NA NA 1+ FORMUL 4 EDO 5(C2 H6 O2) FORMUL 9 HOH *290(H2 O) HELIX 1 1 SER A 71 ASP A 74 5 4 HELIX 2 2 SER A 89 GLN A 110 1 22 HELIX 3 3 ASP A 125 SER A 136 1 12 HELIX 4 4 ASP A 144 THR A 152 1 9 HELIX 5 5 THR A 156 LEU A 160 5 5 HELIX 6 6 ASP A 209 GLN A 217 1 9 SHEET 1 A 5 PRO A 65 SER A 69 0 SHEET 2 A 5 ALA A 54 LEU A 59 -1 N VAL A 57 O GLY A 66 SHEET 3 A 5 HIS A 43 GLN A 51 -1 N TRP A 45 O TYR A 58 SHEET 4 A 5 GLY A 15 CYS A 19 -1 N TYR A 17 O LEU A 44 SHEET 5 A 5 LEU A 76 PRO A 78 -1 O GLN A 77 N GLN A 18 SHEET 1 B 2 LEU A 23 PHE A 26 0 SHEET 2 B 2 LEU A 34 SER A 38 -1 O ALA A 35 N LEU A 25 SHEET 1 C 6 GLN A 153 ILE A 155 0 SHEET 2 C 6 LEU A 219 ARG A 224 -1 O ARG A 224 N GLN A 153 SHEET 3 C 6 LEU A 165 GLY A 169 -1 N LEU A 165 O GLY A 223 SHEET 4 C 6 ALA A 174 TYR A 180 -1 O THR A 175 N PHE A 168 SHEET 5 C 6 TYR A 185 SER A 190 -1 O ILE A 187 N LEU A 179 SHEET 6 C 6 GLY A 198 ILE A 203 -1 O GLY A 200 N HIS A 188 LINK C ALA A 107 N MSE A 108 1555 1555 1.32 LINK C MSE A 108 N GLN A 109 1555 1555 1.34 LINK C LEU A 129 N MSE A 130 1555 1555 1.34 LINK C MSE A 130 N GLN A 131 1555 1555 1.33 LINK OE1 GLU A 99 NA NA A 236 1555 1555 2.18 LINK OE2 GLU A 99 NA NA A 236 1555 1555 2.94 CISPEP 1 GLY A 121 PRO A 122 0 6.04 CISPEP 2 ARG A 233 ARG A 234 0 -12.98 SITE 1 AC1 5 ASP A 27 SER A 28 CYS A 31 THR A 32 SITE 2 AC1 5 ARG A 33 SITE 1 AC2 3 GLU A 99 ALA A 162 LEU A 181 SITE 1 AC3 6 THR A 119 GLN A 131 ALA A 132 TRP A 140 SITE 2 AC3 6 HOH A 244 HOH A 292 SITE 1 AC4 9 ASN A 112 ARG A 196 ASP A 197 GLY A 198 SITE 2 AC4 9 ILE A 199 HOH A 276 HOH A 371 HOH A 520 SITE 3 AC4 9 HOH A 528 SITE 1 AC5 5 ASP A 22 LEU A 23 ASN A 24 ASP A 72 SITE 2 AC5 5 HOH A 434 SITE 1 AC6 8 THR A 32 GLN A 37 GLY A 121 PRO A 122 SITE 2 AC6 8 ASN A 123 HOH A 246 HOH A 300 HOH A 324 SITE 1 AC7 5 GLN A 84 ALA A 85 THR A 87 GLU A 92 SITE 2 AC7 5 GLU A 230 CRYST1 90.470 90.470 93.810 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011050 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010660 0.00000