HEADER MEMBRANE PROTEIN 08-NOV-05 2EXD TITLE THE SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF A NFED HOMOLOG FROM TITLE 2 PYROCOCCUS HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: NFED SHORT HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 72-143; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 GENE: PH0471; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS NFED, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.KUWAHARA,A.OHNO,T.MORII,H.TOCHIO,M.SHIRAKAWA,H.HIROAKI REVDAT 5 01-MAY-24 2EXD 1 REMARK SEQADV REVDAT 4 13-JUL-11 2EXD 1 VERSN REVDAT 3 19-MAY-09 2EXD 1 JRNL REVDAT 2 24-FEB-09 2EXD 1 VERSN REVDAT 1 12-DEC-06 2EXD 0 JRNL AUTH Y.KUWAHARA,A.OHNO,T.MORII,H.YOKOYAMA,I.MATSUI,H.TOCHIO, JRNL AUTH 2 M.SHIRAKAWA,H.HIROAKI JRNL TITL THE SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF NFED JRNL TITL 2 REVEALS A NOVEL MEMBRANE-ANCHORED OB-FOLD. JRNL REF PROTEIN SCI. V. 17 1915 2008 JRNL REFN ISSN 0961-8368 JRNL PMID 18687870 JRNL DOI 10.1110/PS.034736.108 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17, CYANA 2.0.17 REMARK 3 AUTHORS : PETER GUNTERT (CYANA), PETER GUNTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EXD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000035209. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 300MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM PROTEIN U-15N, 25MM REMARK 210 PHOSPHATE BUFFER NA, 300MM NACL, REMARK 210 1MM EDTA, 95% H2O, 5% D2O; 0.7MM REMARK 210 PROTEIN U-15N,13C, 25MM REMARK 210 PHOSPHATE BUFFER NA, 300MM NACL, REMARK 210 1MM EDTA, 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE 2.3, SPARKY REMARK 210 3.106 REMARK 210 METHOD USED : DISTANCE GEOMETRY, RIGID BODY REMARK 210 RESTRAINED MOLECULAR DYNAMICS, REMARK 210 DIHEDRAL ANGLE MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 74 134.42 -33.55 REMARK 500 1 THR A 76 51.41 -119.95 REMARK 500 1 LEU A 87 -34.56 -39.27 REMARK 500 1 LYS A 118 125.62 -39.46 REMARK 500 1 ASP A 131 44.51 -104.22 REMARK 500 1 LEU A 144 -36.16 -34.45 REMARK 500 2 THR A 75 85.38 -61.70 REMARK 500 2 THR A 76 -60.38 -100.75 REMARK 500 2 LEU A 87 -36.68 -34.95 REMARK 500 2 LYS A 118 97.95 -52.68 REMARK 500 2 LEU A 119 -177.74 -66.96 REMARK 500 2 GLN A 143 39.19 -90.60 REMARK 500 3 PHE A 85 41.41 37.18 REMARK 500 3 LYS A 118 105.77 -37.67 REMARK 500 3 ASP A 131 48.44 -102.49 REMARK 500 3 LEU A 144 41.22 -90.13 REMARK 500 4 GLU A 74 171.78 -58.20 REMARK 500 4 LYS A 82 38.68 -98.58 REMARK 500 4 LEU A 87 -35.26 -32.90 REMARK 500 4 LYS A 88 109.97 -41.48 REMARK 500 4 LYS A 136 108.82 -55.87 REMARK 500 4 LEU A 144 37.38 -85.64 REMARK 500 5 GLU A 74 149.74 -33.61 REMARK 500 5 THR A 75 55.01 -92.19 REMARK 500 5 LYS A 82 39.76 -85.86 REMARK 500 5 LEU A 87 -34.18 -35.96 REMARK 500 5 LYS A 88 98.50 -50.06 REMARK 500 5 VAL A 94 88.87 -65.85 REMARK 500 5 LEU A 144 36.68 -85.86 REMARK 500 6 LYS A 118 98.61 -53.34 REMARK 500 6 LYS A 136 103.14 -53.04 REMARK 500 6 PRO A 142 -175.27 -69.76 REMARK 500 6 LEU A 144 34.78 -85.70 REMARK 500 7 LYS A 82 36.79 -89.99 REMARK 500 7 LEU A 87 -35.75 -37.22 REMARK 500 7 LYS A 88 109.78 -45.98 REMARK 500 7 LYS A 118 113.38 -37.10 REMARK 500 7 LEU A 135 79.63 -107.15 REMARK 500 7 LYS A 136 126.28 -33.48 REMARK 500 7 PRO A 142 -165.86 -69.79 REMARK 500 8 TYR A 83 -57.59 -131.07 REMARK 500 8 THR A 84 -32.14 -132.74 REMARK 500 8 LEU A 87 -38.42 -33.80 REMARK 500 8 LYS A 88 106.78 -43.32 REMARK 500 8 VAL A 94 93.56 -69.88 REMARK 500 8 LYS A 118 101.40 -50.19 REMARK 500 8 ASP A 129 149.44 -172.67 REMARK 500 9 ASP A 77 37.84 39.85 REMARK 500 9 GLU A 107 41.47 39.05 REMARK 500 9 LEU A 144 25.07 44.12 REMARK 500 REMARK 500 THIS ENTRY HAS 108 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2EXD A 72 143 GB 14590384 NP_142450 72 143 SEQADV 2EXD LEU A 144 GB 14590384 CLONING ARTIFACT SEQADV 2EXD GLU A 145 GB 14590384 CLONING ARTIFACT SEQADV 2EXD HIS A 146 GB 14590384 EXPRESSION TAG SEQADV 2EXD HIS A 147 GB 14590384 EXPRESSION TAG SEQADV 2EXD HIS A 148 GB 14590384 EXPRESSION TAG SEQADV 2EXD HIS A 149 GB 14590384 EXPRESSION TAG SEQADV 2EXD HIS A 150 GB 14590384 EXPRESSION TAG SEQADV 2EXD HIS A 151 GB 14590384 EXPRESSION TAG SEQRES 1 A 80 ARG ARG GLU THR THR ASP ILE GLY GLY GLY LYS TYR THR SEQRES 2 A 80 PHE GLU LEU LYS GLY LYS VAL GLY LYS VAL VAL LYS ILE SEQRES 3 A 80 ALA GLU ASP HIS TYR LEU VAL GLU VAL GLU GLY ASP LYS SEQRES 4 A 80 TRP ILE ALA TYR SER ASP GLU LYS LEU SER LEU GLY ASP SEQRES 5 A 80 ARG VAL MET VAL VAL ASP VAL ASP GLY LEU LYS LEU LYS SEQRES 6 A 80 VAL LYS ARG ILE PRO PRO GLN LEU GLU HIS HIS HIS HIS SEQRES 7 A 80 HIS HIS SHEET 1 A 5 ASP A 109 ALA A 113 0 SHEET 2 A 5 TYR A 102 VAL A 106 -1 N VAL A 106 O ASP A 109 SHEET 3 A 5 VAL A 91 LYS A 96 -1 N LYS A 96 O LEU A 103 SHEET 4 A 5 ARG A 124 VAL A 130 -1 O VAL A 125 N GLY A 92 SHEET 5 A 5 LEU A 135 ARG A 139 -1 O LYS A 136 N VAL A 128 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1