HEADER TRANSFERASE 08-NOV-05 2EXE TITLE CRYSTAL STRUCTURE OF THE PHOSPHORYLATED CLK3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE CLK3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN; COMPND 5 SYNONYM: CDC-LIKE KINASE 3; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CLK3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS DUAL-SPECIFICITY KINASE, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.PAPAGRIGORIOU,P.RELLOS,S.DAS,A.BULLOCK,L.J.BALL,A.TURNBULL, AUTHOR 2 P.SAVITSKY,O.FEDOROV,C.JOHANSSON,E.UGOCHUKWU,F.SOBOTT,F.VON DELFT, AUTHOR 3 A.EDWARDS,M.SUNDSTROM,J.WEIGELT,C.ARROWSMITH,S.KNAPP,STRUCTURAL AUTHOR 4 GENOMICS CONSORTIUM (SGC) REVDAT 8 23-AUG-23 2EXE 1 REMARK REVDAT 7 02-MAY-12 2EXE 1 COMPND REVDAT 6 13-JUL-11 2EXE 1 VERSN REVDAT 5 05-MAY-10 2EXE 1 AUTHOR JRNL REVDAT 4 24-FEB-09 2EXE 1 VERSN REVDAT 3 03-APR-07 2EXE 1 REMARK REVDAT 2 28-NOV-06 2EXE 1 KEYWDS REVDAT 1 15-NOV-05 2EXE 0 JRNL AUTH E.PAPAGRIGORIOU,P.RELLOS,S.DAS,A.BULLOCK,L.J.BALL, JRNL AUTH 2 A.TURNBULL,O.FEDOROV,C.JOHANSSON,E.UGOCHUKWU,F.SOBOTT, JRNL AUTH 3 F.VON DELFT,A.EDWARDS,M.SUNDSTROM,J.WEIGELT,C.ARROWSMITH, JRNL AUTH 4 S.KNAPP JRNL TITL CRYSTAL STRUCTURE OF THE PHOSPHORYLATED CLK3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1171 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1660 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2085 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.26000 REMARK 3 B22 (A**2) : 1.95000 REMARK 3 B33 (A**2) : 3.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.195 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.667 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2155 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1917 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2926 ; 1.235 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4424 ; 0.926 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 262 ; 5.967 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;35.022 ;23.398 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 346 ;16.505 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;23.117 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 322 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2392 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 461 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 499 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1981 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1066 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1142 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 86 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.131 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 28 ; 0.283 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.190 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1349 ; 1.894 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 525 ; 0.472 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2117 ; 2.980 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 908 ; 4.991 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 807 ; 6.778 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 198 A 476 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7673 18.2037 30.2449 REMARK 3 T TENSOR REMARK 3 T11: -0.1371 T22: -0.2081 REMARK 3 T33: -0.1241 T12: 0.0222 REMARK 3 T13: -0.0952 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 2.5481 L22: 1.9056 REMARK 3 L33: 1.7771 L12: -1.2664 REMARK 3 L13: -0.3872 L23: 0.8911 REMARK 3 S TENSOR REMARK 3 S11: 0.1331 S12: 0.0664 S13: -0.4353 REMARK 3 S21: -0.3023 S22: -0.1706 S23: 0.4888 REMARK 3 S31: -0.0131 S32: 0.0938 S33: 0.0375 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE N-TERMINAL DOMAIN OF CLK3 IS HIGHLY MOBILE AND, REMARK 3 HENCE, WAS NOT BUILT. THIS IS PROBABLY DUE TO PHOSPHORYLATION. REMARK 3 THE EFFECT OF PHOSPHORYLATION ON THE CLK3 STRUCTURE CAN BE MORE REMARK 3 CLEARLY DEMONSTRATED IF THE STRUCTURE OF THE PHOSPHOTYLATED REMARK 3 MOLECULE IS COMPARED WITH THE STRUCTURE OF THE DEPHOSPHORYLATED REMARK 3 CLK3 (PDB ID:2EU9) REMARK 4 REMARK 4 2EXE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000035210. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97640 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23665 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 32.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04950 REMARK 200 R SYM (I) : 0.04950 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34320 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1Z57 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M (NH4)3(CIT), PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.09000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.49900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 80.77200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.09000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.49900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.77200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.09000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.49900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.77200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.09000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.49900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.77200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER REMARK 300 ONE MONOMER IS FOUND IN THE ASU REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 127 REMARK 465 SER A 128 REMARK 465 SER A 129 REMARK 465 LYS A 130 REMARK 465 ARG A 131 REMARK 465 SER A 132 REMARK 465 SER A 133 REMARK 465 ARG A 134 REMARK 465 SER A 135 REMARK 465 VAL A 136 REMARK 465 GLU A 137 REMARK 465 ASP A 138 REMARK 465 ASP A 139 REMARK 465 LYS A 140 REMARK 465 GLU A 141 REMARK 465 GLY A 142 REMARK 465 HIS A 143 REMARK 465 LEU A 144 REMARK 465 VAL A 145 REMARK 465 CYS A 146 REMARK 465 ARG A 147 REMARK 465 ILE A 148 REMARK 465 GLY A 149 REMARK 465 ASP A 150 REMARK 465 TRP A 151 REMARK 465 LEU A 152 REMARK 465 GLN A 153 REMARK 465 GLU A 154 REMARK 465 ARG A 155 REMARK 465 TYR A 156 REMARK 465 GLU A 157 REMARK 465 ILE A 158 REMARK 465 VAL A 159 REMARK 465 GLY A 160 REMARK 465 ASN A 161 REMARK 465 LEU A 162 REMARK 465 GLY A 163 REMARK 465 GLU A 164 REMARK 465 GLY A 165 REMARK 465 THR A 166 REMARK 465 PHE A 167 REMARK 465 GLY A 168 REMARK 465 LYS A 169 REMARK 465 VAL A 170 REMARK 465 VAL A 171 REMARK 465 GLU A 172 REMARK 465 CYS A 173 REMARK 465 LEU A 174 REMARK 465 ASP A 175 REMARK 465 HIS A 176 REMARK 465 ALA A 177 REMARK 465 ARG A 178 REMARK 465 GLY A 179 REMARK 465 LYS A 180 REMARK 465 SER A 181 REMARK 465 GLN A 182 REMARK 465 VAL A 183 REMARK 465 ALA A 184 REMARK 465 LEU A 185 REMARK 465 LYS A 186 REMARK 465 ILE A 187 REMARK 465 ILE A 188 REMARK 465 ARG A 189 REMARK 465 ASN A 190 REMARK 465 VAL A 191 REMARK 465 GLY A 192 REMARK 465 LYS A 193 REMARK 465 TYR A 194 REMARK 465 ARG A 195 REMARK 465 GLU A 196 REMARK 465 ALA A 197 REMARK 465 ASP A 212 REMARK 465 LYS A 213 REMARK 465 GLU A 214 REMARK 465 ASN A 215 REMARK 465 LYS A 216 REMARK 465 TRP A 225 REMARK 465 PHE A 226 REMARK 465 ASN A 227 REMARK 465 PHE A 228 REMARK 465 HIS A 229 REMARK 465 GLY A 230 REMARK 465 HIS A 231 REMARK 465 MET A 232 REMARK 465 CYS A 233 REMARK 465 ILE A 234 REMARK 465 GLU A 302 REMARK 465 HIS A 303 REMARK 465 LYS A 304 REMARK 465 SER A 305 REMARK 465 CYS A 306 REMARK 465 ARG A 480 REMARK 465 SER A 481 REMARK 465 PHE A 482 REMARK 465 HIS A 483 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 199 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 200 CG CD1 CD2 REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 LYS A 207 CE NZ REMARK 470 LYS A 209 CD CE NZ REMARK 470 GLU A 210 CD OE1 OE2 REMARK 470 LYS A 211 CD CE NZ REMARK 470 PHE A 217 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 224 CG OD1 OD2 REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 LEU A 238 CG CD1 CD2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 LYS A 248 CE NZ REMARK 470 GLN A 253 CD OE1 NE2 REMARK 470 ASN A 293 CG OD1 ND2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 LEU A 299 CG CD1 CD2 REMARK 470 TYR A 300 CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 LYS A 312 CG CD CE NZ REMARK 470 ARG A 317 CZ NH1 NH2 REMARK 470 LYS A 409 CG CD CE NZ REMARK 470 LYS A 425 CE NZ REMARK 470 LYS A 432 CD CE NZ REMARK 470 GLN A 437 CD OE1 NE2 REMARK 470 GLU A 441 CD OE1 OE2 REMARK 470 GLN A 459 OE1 NE2 REMARK 470 GLU A 478 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 338 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 199 46.83 -94.93 REMARK 500 LEU A 218 40.07 -90.49 REMARK 500 GLU A 249 8.56 -65.19 REMARK 500 ASN A 250 31.75 -140.57 REMARK 500 THR A 282 -17.20 79.06 REMARK 500 ASP A 320 75.60 63.29 REMARK 500 ALA A 336 152.20 72.68 REMARK 500 ALA A 352 -149.06 -159.46 REMARK 500 LEU A 468 46.10 -89.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EU9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN BUT PHOSPHORYLATED DBREF 2EXE A 127 483 UNP P49761 CLK3_HUMAN 127 483 SEQRES 1 A 357 GLN SER SER LYS ARG SER SER ARG SER VAL GLU ASP ASP SEQRES 2 A 357 LYS GLU GLY HIS LEU VAL CYS ARG ILE GLY ASP TRP LEU SEQRES 3 A 357 GLN GLU ARG TYR GLU ILE VAL GLY ASN LEU GLY GLU GLY SEQRES 4 A 357 THR PHE GLY LYS VAL VAL GLU CYS LEU ASP HIS ALA ARG SEQRES 5 A 357 GLY LYS SER GLN VAL ALA LEU LYS ILE ILE ARG ASN VAL SEQRES 6 A 357 GLY LYS TYR ARG GLU ALA ALA ARG LEU GLU ILE ASN VAL SEQRES 7 A 357 LEU LYS LYS ILE LYS GLU LYS ASP LYS GLU ASN LYS PHE SEQRES 8 A 357 LEU CYS VAL LEU MET SER ASP TRP PHE ASN PHE HIS GLY SEQRES 9 A 357 HIS MET CYS ILE ALA PHE GLU LEU LEU GLY LYS ASN THR SEQRES 10 A 357 PHE GLU PHE LEU LYS GLU ASN ASN PHE GLN PRO TYR PRO SEQRES 11 A 357 LEU PRO HIS VAL ARG HIS MET ALA TYR GLN LEU CYS HIS SEQRES 12 A 357 ALA LEU ARG PHE LEU HIS GLU ASN GLN LEU THR HIS THR SEQRES 13 A 357 ASP LEU LYS PRO GLU ASN ILE LEU PHE VAL ASN SER GLU SEQRES 14 A 357 PHE GLU THR LEU TYR ASN GLU HIS LYS SER CYS GLU GLU SEQRES 15 A 357 LYS SER VAL LYS ASN THR SER ILE ARG VAL ALA ASP PHE SEQRES 16 A 357 GLY SER ALA THR PHE ASP HIS GLU HIS HIS THR THR ILE SEQRES 17 A 357 VAL ALA THR ARG HIS TYR ARG PRO PRO GLU VAL ILE LEU SEQRES 18 A 357 GLU LEU GLY TRP ALA GLN PRO CYS ASP VAL TRP SER ILE SEQRES 19 A 357 GLY CYS ILE LEU PHE GLU TYR TYR ARG GLY PHE THR LEU SEQRES 20 A 357 PHE GLN THR HIS GLU ASN ARG GLU HIS LEU VAL MET MET SEQRES 21 A 357 GLU LYS ILE LEU GLY PRO ILE PRO SER HIS MET ILE HIS SEQRES 22 A 357 ARG THR ARG LYS GLN LYS TYR PHE TYR LYS GLY GLY LEU SEQRES 23 A 357 VAL TRP ASP GLU ASN SER SER ASP GLY ARG TYR VAL LYS SEQRES 24 A 357 GLU ASN CYS LYS PRO LEU LYS SER TYR MET LEU GLN ASP SEQRES 25 A 357 SER LEU GLU HIS VAL GLN LEU PHE ASP LEU MET ARG ARG SEQRES 26 A 357 MET LEU GLU PHE ASP PRO ALA GLN ARG ILE THR LEU ALA SEQRES 27 A 357 GLU ALA LEU LEU HIS PRO PHE PHE ALA GLY LEU THR PRO SEQRES 28 A 357 GLU GLU ARG SER PHE HIS FORMUL 2 HOH *96(H2 O) HELIX 1 1 ARG A 199 GLU A 210 1 12 HELIX 2 2 ASN A 242 GLU A 249 1 8 HELIX 3 3 PRO A 256 GLU A 276 1 21 HELIX 4 4 LYS A 285 GLU A 287 5 3 HELIX 5 5 ASP A 320 ALA A 324 5 5 HELIX 6 6 THR A 337 ARG A 341 5 5 HELIX 7 7 PRO A 342 LEU A 347 1 6 HELIX 8 8 GLN A 353 GLY A 370 1 18 HELIX 9 9 GLU A 378 GLY A 391 1 14 HELIX 10 10 PRO A 394 THR A 401 1 8 HELIX 11 11 LYS A 403 LYS A 405 5 3 HELIX 12 12 SER A 418 CYS A 428 1 11 HELIX 13 13 PRO A 430 MET A 435 5 6 HELIX 14 14 SER A 439 LEU A 453 1 15 HELIX 15 15 THR A 462 LEU A 468 1 7 HELIX 16 16 HIS A 469 LEU A 475 5 7 SHEET 1 A 2 LEU A 279 THR A 280 0 SHEET 2 A 2 THR A 325 PHE A 326 -1 O THR A 325 N THR A 280 SHEET 1 B 2 ILE A 289 PHE A 296 0 SHEET 2 B 2 VAL A 311 VAL A 318 -1 O LYS A 312 N GLU A 295 SHEET 1 C 2 PHE A 407 TYR A 408 0 SHEET 2 C 2 GLY A 411 LEU A 412 -1 O GLY A 411 N TYR A 408 CRYST1 62.180 110.998 161.544 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016082 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006190 0.00000