HEADER ELECTRON TRANSPORT 09-NOV-05 2EXV TITLE CRYSTAL STRUCTURE OF THE F7A MUTANT OF THE CYTOCHROME C551 FROM TITLE 2 PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C-551; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: CYTOCHROME C551, CYTOCHROME C8; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: NIRM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOCHROME C, ALPHA HELIX, HEME C, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR D.BONIVENTO,A.DI MATTEO,A.BORGIA,C.TRAVAGLINI-ALLOCATELLI,M.BRUNORI REVDAT 6 09-OCT-24 2EXV 1 REMARK REVDAT 5 20-OCT-21 2EXV 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2EXV 1 VERSN REVDAT 3 24-FEB-09 2EXV 1 VERSN REVDAT 2 25-APR-06 2EXV 1 JRNL REVDAT 1 07-FEB-06 2EXV 0 JRNL AUTH A.BORGIA,D.BONIVENTO,C.TRAVAGLINI-ALLOCATELLI,A.DI MATTEO, JRNL AUTH 2 M.BRUNORI JRNL TITL UNVEILING A HIDDEN FOLDING INTERMEDIATE IN C-TYPE JRNL TITL 2 CYTOCHROMES BY PROTEIN ENGINEERING JRNL REF J.BIOL.CHEM. V. 281 9331 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16452476 JRNL DOI 10.1074/JBC.M512127200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.MATSUURA,T.TAKANO,R.E.DICKERSON REMARK 1 TITL STRUCTURE OF CYTOCHROME C551 FROM PSEUDOMONAS AERUGINOSA REMARK 1 TITL 2 REFINED AT 1.6 A RESOLUTION AND COMPARISON OF THE TWO REDOX REMARK 1 TITL 3 FORMS. REMARK 1 REF J.MOL.BIOL. V. 156 389 1982 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 6283101 REMARK 1 DOI 10.1016/0022-2836(82)90335-7 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.HASEGAWA,S.UCHIYAMA,Y.TANIMOTO,M.MIZUTANI,Y.KOBAYASHI, REMARK 1 AUTH 2 Y.SAMBONGI,Y.IGARASHI REMARK 1 TITL SELECTED MUTATIONS IN A MESOPHILIC CYTOCHROME C CONFER THE REMARK 1 TITL 2 STABILITY OF A THERMOPHILIC COUNTERPART. REMARK 1 REF J.BIOL.CHEM. V. 275 37824 2000 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 10918067 REMARK 1 DOI 10.1074/JBC.M005861200 REMARK 1 REFERENCE 3 REMARK 1 AUTH C.TRAVAGLINI-ALLOCATELLI,S.GIANNI,V.K.DUBEY,A.BORGIA, REMARK 1 AUTH 2 A.DI MATTEO,D.BONIVENTO,K.L.BREN,M.BRUNORI REMARK 1 TITL AN OBLIGATORY INTERMEDIATE IN THE FOLDING PATHWAY OF REMARK 1 TITL 2 CYTOCHROME C552 FROM HYDROGENOBACTER THERMOPHILUS. REMARK 1 REF J.BIOL.CHEM. V. 280 25729 2005 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 15883159 REMARK 1 DOI 10.1074/JBC.M502628200 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12692 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 660 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 935 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1199 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.62000 REMARK 3 B22 (A**2) : 0.62000 REMARK 3 B33 (A**2) : -0.93000 REMARK 3 B12 (A**2) : 0.31000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.335 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1390 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1915 ; 1.534 ; 2.165 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 170 ; 5.620 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 51 ;43.986 ;26.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 208 ;16.690 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ; 9.809 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 186 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1085 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 694 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 942 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 105 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 49 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.156 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 849 ; 0.793 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1322 ; 1.205 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 648 ; 1.867 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 584 ; 2.703 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): -15.9480 16.6840 0.5990 REMARK 3 T TENSOR REMARK 3 T11: -0.2754 T22: -0.2323 REMARK 3 T33: -0.2556 T12: -0.0597 REMARK 3 T13: 0.0347 T23: -0.0665 REMARK 3 L TENSOR REMARK 3 L11: 6.2779 L22: 3.8283 REMARK 3 L33: 4.8824 L12: 0.1862 REMARK 3 L13: 1.5784 L23: 1.4815 REMARK 3 S TENSOR REMARK 3 S11: -0.0907 S12: -0.1191 S13: -0.0528 REMARK 3 S21: 0.3047 S22: -0.1166 S23: 0.2397 REMARK 3 S31: 0.1493 S32: -0.0366 S33: 0.2073 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7830 18.2830 -2.3030 REMARK 3 T TENSOR REMARK 3 T11: -0.2293 T22: -0.1337 REMARK 3 T33: -0.1819 T12: -0.0741 REMARK 3 T13: 0.0192 T23: -0.0518 REMARK 3 L TENSOR REMARK 3 L11: 21.7970 L22: 6.2890 REMARK 3 L33: 11.0696 L12: 0.7527 REMARK 3 L13: 13.9489 L23: 4.1453 REMARK 3 S TENSOR REMARK 3 S11: 0.1230 S12: -0.0836 S13: -0.2570 REMARK 3 S21: 0.3843 S22: 0.0221 S23: -0.3177 REMARK 3 S31: 0.1022 S32: 0.3682 S33: -0.1452 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 82 REMARK 3 ORIGIN FOR THE GROUP (A): 1.0880 23.7590 -19.3370 REMARK 3 T TENSOR REMARK 3 T11: -0.2854 T22: -0.1209 REMARK 3 T33: -0.1949 T12: -0.0194 REMARK 3 T13: -0.0105 T23: 0.0709 REMARK 3 L TENSOR REMARK 3 L11: 7.9926 L22: 2.8113 REMARK 3 L33: 8.9512 L12: -0.2286 REMARK 3 L13: 1.9016 L23: -2.5301 REMARK 3 S TENSOR REMARK 3 S11: 0.2522 S12: -0.0947 S13: -0.2093 REMARK 3 S21: -0.2346 S22: -0.2602 S23: -0.2762 REMARK 3 S31: 0.4623 S32: 0.0945 S33: 0.0080 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 83 C 83 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1180 21.6220 -16.7350 REMARK 3 T TENSOR REMARK 3 T11: -0.2321 T22: -0.0187 REMARK 3 T33: -0.1735 T12: -0.0758 REMARK 3 T13: -0.0455 T23: 0.1223 REMARK 3 L TENSOR REMARK 3 L11: 7.6735 L22: 6.7714 REMARK 3 L33: 15.9721 L12: 3.8822 REMARK 3 L13: 11.0614 L23: 5.9567 REMARK 3 S TENSOR REMARK 3 S11: 0.4708 S12: -0.7996 S13: -0.4678 REMARK 3 S21: -0.2204 S22: -0.2435 S23: -0.1764 REMARK 3 S31: 0.7351 S32: -0.6252 S33: -0.2272 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2EXV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000035226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13460 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26-30% PEG 4K, ZINC ACETATE 0.2 M, REMARK 280 SODIUM ACETATE 0.1 M, PH 4.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.64133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.82067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.23100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 10.41033 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.05167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU C 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 21 CD CE NZ REMARK 480 LYS A 82 CG CD CE NZ REMARK 480 GLN C 72 CD OE1 NE2 REMARK 480 LYS C 82 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 22 -129.91 -120.44 REMARK 500 MET C 22 -128.34 -107.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 83 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 16 NE2 REMARK 620 2 HEC A 83 NA 84.4 REMARK 620 3 HEC A 83 NB 88.5 87.6 REMARK 620 4 HEC A 83 NC 90.9 175.3 92.3 REMARK 620 5 HEC A 83 ND 88.4 91.6 176.8 88.2 REMARK 620 6 MET A 61 SD 174.9 91.2 88.6 93.4 94.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 83 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 16 NE2 REMARK 620 2 HEC C 83 NA 86.2 REMARK 620 3 HEC C 83 NB 88.9 90.4 REMARK 620 4 HEC C 83 NC 88.6 174.8 89.0 REMARK 620 5 HEC C 83 ND 86.1 90.4 174.9 89.7 REMARK 620 6 MET C 61 SD 175.5 91.0 87.7 94.2 97.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 83 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC C 83 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY C 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 351C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CYT C551 FROM PSEUDOMONAS AERUGINOSA REMARK 900 RELATED ID: 1DVV RELATED DB: PDB REMARK 900 QUINTUPLE MUTANT OF CYT C551 FROM PSEUDOMONAS AERUGINOSA REMARK 900 RELATED ID: 1YNR RELATED DB: PDB REMARK 900 HYDROGENOBACTER THERMOPHILUS CYT C552, A THERMOPHILIC HOMOLOGUE OF REMARK 900 PSEUDOMONAS AERUGINOSA CYT C551 DBREF 2EXV A 1 82 UNP P00099 CY551_PSEAE 23 104 DBREF 2EXV C 1 82 UNP P00099 CY551_PSEAE 23 104 SEQADV 2EXV ALA A 7 UNP P00099 PHE 29 ENGINEERED MUTATION SEQADV 2EXV ALA C 7 UNP P00099 PHE 29 ENGINEERED MUTATION SEQRES 1 A 82 GLU ASP PRO GLU VAL LEU ALA LYS ASN LYS GLY CYS VAL SEQRES 2 A 82 ALA CYS HIS ALA ILE ASP THR LYS MET VAL GLY PRO ALA SEQRES 3 A 82 TYR LYS ASP VAL ALA ALA LYS PHE ALA GLY GLN ALA GLY SEQRES 4 A 82 ALA GLU ALA GLU LEU ALA GLN ARG ILE LYS ASN GLY SER SEQRES 5 A 82 GLN GLY VAL TRP GLY PRO ILE PRO MET PRO PRO ASN ALA SEQRES 6 A 82 VAL SER ASP ASP GLU ALA GLN THR LEU ALA LYS TRP VAL SEQRES 7 A 82 LEU SER GLN LYS SEQRES 1 C 82 GLU ASP PRO GLU VAL LEU ALA LYS ASN LYS GLY CYS VAL SEQRES 2 C 82 ALA CYS HIS ALA ILE ASP THR LYS MET VAL GLY PRO ALA SEQRES 3 C 82 TYR LYS ASP VAL ALA ALA LYS PHE ALA GLY GLN ALA GLY SEQRES 4 C 82 ALA GLU ALA GLU LEU ALA GLN ARG ILE LYS ASN GLY SER SEQRES 5 C 82 GLN GLY VAL TRP GLY PRO ILE PRO MET PRO PRO ASN ALA SEQRES 6 C 82 VAL SER ASP ASP GLU ALA GLN THR LEU ALA LYS TRP VAL SEQRES 7 C 82 LEU SER GLN LYS HET HEC A 83 49 HET ACY A 201 4 HET HEC C 83 48 HET ACY C 202 4 HETNAM HEC HEME C HETNAM ACY ACETIC ACID FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 4 ACY 2(C2 H4 O2) FORMUL 7 HOH *128(H2 O) HELIX 1 1 ASP A 2 LYS A 10 1 9 HELIX 2 2 GLY A 11 CYS A 15 5 5 HELIX 3 3 ALA A 26 ALA A 35 1 10 HELIX 4 4 GLY A 39 GLY A 51 1 13 HELIX 5 5 SER A 67 SER A 80 1 14 HELIX 6 6 ASP C 2 LYS C 10 1 9 HELIX 7 7 GLY C 11 CYS C 15 5 5 HELIX 8 8 ALA C 26 ALA C 35 1 10 HELIX 9 9 GLY C 39 GLY C 51 1 13 HELIX 10 10 SER C 67 SER C 80 1 14 LINK SG CYS A 12 CAB HEC A 83 1555 1555 1.80 LINK SG CYS A 15 CAC HEC A 83 1555 1555 1.94 LINK SG CYS C 12 CAB HEC C 83 1555 1555 1.83 LINK SG CYS C 15 CAC HEC C 83 1555 1555 1.96 LINK NE2 HIS A 16 FE HEC A 83 1555 1555 1.99 LINK SD MET A 61 FE HEC A 83 1555 1555 2.31 LINK NE2 HIS C 16 FE HEC C 83 1555 1555 1.97 LINK SD MET C 61 FE HEC C 83 1555 1555 2.35 SITE 1 AC1 19 GLY A 11 CYS A 12 CYS A 15 HIS A 16 SITE 2 AC1 19 PHE A 34 LEU A 44 ARG A 47 ILE A 48 SITE 3 AC1 19 SER A 52 GLN A 53 GLY A 54 VAL A 55 SITE 4 AC1 19 TRP A 56 GLY A 57 ILE A 59 MET A 61 SITE 5 AC1 19 PRO A 62 ASN A 64 HOH A 202 SITE 1 AC2 24 GLY C 11 CYS C 12 CYS C 15 HIS C 16 SITE 2 AC2 24 VAL C 23 GLY C 24 PRO C 25 PHE C 34 SITE 3 AC2 24 LEU C 44 ARG C 47 ILE C 48 SER C 52 SITE 4 AC2 24 GLN C 53 GLY C 54 VAL C 55 TRP C 56 SITE 5 AC2 24 GLY C 57 ILE C 59 PRO C 60 MET C 61 SITE 6 AC2 24 PRO C 62 ASN C 64 HOH C 210 HOH C 230 SITE 1 AC3 2 ALA A 38 GLY A 39 SITE 1 AC4 3 GLY C 39 HOH C 215 HOH C 239 CRYST1 66.766 66.766 62.462 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014978 0.008647 0.000000 0.00000 SCALE2 0.000000 0.017295 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016010 0.00000