HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 11-NOV-05 2F06 TITLE CRYSTAL STRUCTURE OF PROTEIN BT0572 FROM BACTEROIDES THETAIOTAOMICRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVE; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG KEYWDS STRUCTURAL GENOMICS HYPOTHETICAL PROTEIN, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, STRUCTURAL KEYWDS 3 GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,L.VOLKART,F.COLLART,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 6 13-NOV-24 2F06 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 2F06 1 VERSN REVDAT 4 24-FEB-09 2F06 1 VERSN REVDAT 3 04-DEC-07 2F06 1 AUTHOR JRNL REVDAT 2 19-DEC-06 2F06 1 TITLE JRNL REVDAT 1 27-DEC-05 2F06 0 JRNL AUTH C.CHANG,L.VOLKART,F.COLLART,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PROTEIN BT0572 FROM BACTEROIDES JRNL TITL 2 THETAIOTAOMICRON JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 953 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1249 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2191 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.233 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.195 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.954 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2329 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3168 ; 2.253 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ;14.748 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;39.557 ;26.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 428 ;17.696 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;20.578 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 377 ; 0.267 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1732 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1010 ; 0.256 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1616 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 118 ; 0.211 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 130 ; 0.313 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.341 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1530 ; 1.415 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2399 ; 1.985 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 903 ; 3.651 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 756 ; 5.072 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 4 REMARK 3 RESIDUE RANGE : A 69 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7850 26.8140 29.3340 REMARK 3 T TENSOR REMARK 3 T11: -0.0638 T22: -0.1690 REMARK 3 T33: -0.1827 T12: -0.0266 REMARK 3 T13: -0.0955 T23: 0.1246 REMARK 3 L TENSOR REMARK 3 L11: 2.6202 L22: 4.3265 REMARK 3 L33: 5.9970 L12: -1.1378 REMARK 3 L13: -0.2562 L23: -0.7617 REMARK 3 S TENSOR REMARK 3 S11: -0.0469 S12: -0.5749 S13: -0.5447 REMARK 3 S21: 0.5725 S22: 0.4356 S23: 0.2809 REMARK 3 S31: 0.4925 S32: 0.2109 S33: -0.3886 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8070 33.4220 7.9210 REMARK 3 T TENSOR REMARK 3 T11: 0.0021 T22: -0.0974 REMARK 3 T33: -0.2695 T12: 0.0329 REMARK 3 T13: -0.0928 T23: -0.0673 REMARK 3 L TENSOR REMARK 3 L11: 4.4259 L22: 2.2679 REMARK 3 L33: 4.4024 L12: 1.6003 REMARK 3 L13: 0.2610 L23: 1.3429 REMARK 3 S TENSOR REMARK 3 S11: 0.1577 S12: 0.4566 S13: -0.0068 REMARK 3 S21: -0.7689 S22: 0.1323 S23: 0.2121 REMARK 3 S31: -0.0489 S32: 0.1877 S33: -0.2901 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 4 REMARK 3 RESIDUE RANGE : B 69 B 139 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4310 63.2670 13.8430 REMARK 3 T TENSOR REMARK 3 T11: -0.0698 T22: -0.1338 REMARK 3 T33: -0.2074 T12: -0.0052 REMARK 3 T13: -0.0174 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 0.3347 L22: 3.3523 REMARK 3 L33: 2.2250 L12: -0.5895 REMARK 3 L13: -0.1330 L23: -0.1605 REMARK 3 S TENSOR REMARK 3 S11: -0.1784 S12: 0.2353 S13: 0.2397 REMARK 3 S21: -0.0914 S22: 0.0916 S23: 0.0015 REMARK 3 S31: -0.2744 S32: -0.0715 S33: 0.0868 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 68 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1320 41.3700 9.9720 REMARK 3 T TENSOR REMARK 3 T11: -0.0529 T22: -0.0965 REMARK 3 T33: -0.2976 T12: 0.0460 REMARK 3 T13: 0.0414 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.3258 L22: 3.7590 REMARK 3 L33: 3.8767 L12: -0.2697 REMARK 3 L13: -0.6866 L23: 0.7396 REMARK 3 S TENSOR REMARK 3 S11: -0.0178 S12: 0.0413 S13: -0.3104 REMARK 3 S21: -0.3010 S22: -0.0902 S23: -0.1532 REMARK 3 S31: 0.4830 S32: 0.1065 S33: 0.1080 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2F06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000035288. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 0.97954, 0.97172 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18739 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 21.30 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 60.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 15.70 REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, SOLVE, RESOLVE, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 6000, 0.1M MES PH 6.5, 20% REMARK 280 GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.64733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 163.29467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 122.47100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 204.11833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.82367 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.64733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 163.29467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 204.11833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 122.47100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.82367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TETRAMER GENERATED BY SYMMETRY OPERATION REMARK 300 (X,X-Y+1,1/6-Z) OF DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -32.31100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 55.96429 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 40.82367 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B -2 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 13 OE1 GLU A 38 1.85 REMARK 500 OD1 ASP A 70 O HOH A 190 1.86 REMARK 500 CB SER A 102 O HOH A 158 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 184 O HOH A 185 12565 1.73 REMARK 500 CE1 HIS B 151 O HOH B 169 12565 1.78 REMARK 500 NE2 HIS B 151 O HOH B 169 12565 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 35 CB CYS A 35 SG -0.132 REMARK 500 MSE B 1 SE MSE B 1 CE -0.364 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 14 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG A 46 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 VAL A 66 CB - CA - C ANGL. DEV. = -11.4 DEGREES REMARK 500 ARG B 16 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A -1 -14.02 -150.18 REMARK 500 ALA A 0 -66.60 79.70 REMARK 500 ASN A 12 -122.18 66.20 REMARK 500 LYS A 13 6.07 174.61 REMARK 500 ASN A 106 -107.15 47.69 REMARK 500 ASN A 106 -107.44 47.80 REMARK 500 ALA B 0 132.13 -18.75 REMARK 500 MSE B 1 -30.75 81.02 REMARK 500 MSE B 1 -39.06 88.26 REMARK 500 ASN B 12 -154.78 163.49 REMARK 500 ARG B 16 -50.66 -21.77 REMARK 500 ASN B 106 -94.11 62.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 13 SER A 14 -132.94 REMARK 500 SER A 14 GLY A 15 -50.25 REMARK 500 ASN B -1 ALA B 0 128.53 REMARK 500 GLU B 11 ASN B 12 107.06 REMARK 500 ASN B 12 LYS B 13 -72.18 REMARK 500 GLY B 15 ARG B 16 69.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY B 15 -10.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HIS B 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HIS A 152 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC81344 RELATED DB: TARGETDB DBREF 2F06 A 1 141 UNP Q8AA93 Q8AA93_BACTN 1 141 DBREF 2F06 B 1 141 UNP Q8AA93 Q8AA93_BACTN 1 141 SEQADV 2F06 SER A -2 UNP Q8AA93 CLONING ARTIFACT SEQADV 2F06 ASN A -1 UNP Q8AA93 CLONING ARTIFACT SEQADV 2F06 ALA A 0 UNP Q8AA93 CLONING ARTIFACT SEQADV 2F06 MSE A 1 UNP Q8AA93 MET 1 MODIFIED RESIDUE SEQADV 2F06 MSE A 100 UNP Q8AA93 MET 100 MODIFIED RESIDUE SEQADV 2F06 MSE A 118 UNP Q8AA93 MET 118 MODIFIED RESIDUE SEQADV 2F06 SER B -2 UNP Q8AA93 CLONING ARTIFACT SEQADV 2F06 ASN B -1 UNP Q8AA93 CLONING ARTIFACT SEQADV 2F06 ALA B 0 UNP Q8AA93 CLONING ARTIFACT SEQADV 2F06 MSE B 1 UNP Q8AA93 MET 1 MODIFIED RESIDUE SEQADV 2F06 MSE B 100 UNP Q8AA93 MET 100 MODIFIED RESIDUE SEQADV 2F06 MSE B 118 UNP Q8AA93 MET 118 MODIFIED RESIDUE SEQRES 1 A 144 SER ASN ALA MSE VAL ALA LYS GLN LEU SER ILE PHE LEU SEQRES 2 A 144 GLU ASN LYS SER GLY ARG LEU THR GLU VAL THR GLU VAL SEQRES 3 A 144 LEU ALA LYS GLU ASN ILE ASN LEU SER ALA LEU CYS ILE SEQRES 4 A 144 ALA GLU ASN ALA ASP PHE GLY ILE LEU ARG GLY ILE VAL SEQRES 5 A 144 SER ASP PRO ASP LYS ALA TYR LYS ALA LEU LYS ASP ASN SEQRES 6 A 144 HIS PHE ALA VAL ASN ILE THR ASP VAL VAL GLY ILE SER SEQRES 7 A 144 CYS PRO ASN VAL PRO GLY ALA LEU ALA LYS VAL LEU GLY SEQRES 8 A 144 PHE LEU SER ALA GLU GLY VAL PHE ILE GLU TYR MSE TYR SEQRES 9 A 144 SER PHE ALA ASN ASN ASN VAL ALA ASN VAL VAL ILE ARG SEQRES 10 A 144 PRO SER ASN MSE ASP LYS CYS ILE GLU VAL LEU LYS GLU SEQRES 11 A 144 LYS LYS VAL ASP LEU LEU ALA ALA SER ASP LEU TYR LYS SEQRES 12 A 144 LEU SEQRES 1 B 144 SER ASN ALA MSE VAL ALA LYS GLN LEU SER ILE PHE LEU SEQRES 2 B 144 GLU ASN LYS SER GLY ARG LEU THR GLU VAL THR GLU VAL SEQRES 3 B 144 LEU ALA LYS GLU ASN ILE ASN LEU SER ALA LEU CYS ILE SEQRES 4 B 144 ALA GLU ASN ALA ASP PHE GLY ILE LEU ARG GLY ILE VAL SEQRES 5 B 144 SER ASP PRO ASP LYS ALA TYR LYS ALA LEU LYS ASP ASN SEQRES 6 B 144 HIS PHE ALA VAL ASN ILE THR ASP VAL VAL GLY ILE SER SEQRES 7 B 144 CYS PRO ASN VAL PRO GLY ALA LEU ALA LYS VAL LEU GLY SEQRES 8 B 144 PHE LEU SER ALA GLU GLY VAL PHE ILE GLU TYR MSE TYR SEQRES 9 B 144 SER PHE ALA ASN ASN ASN VAL ALA ASN VAL VAL ILE ARG SEQRES 10 B 144 PRO SER ASN MSE ASP LYS CYS ILE GLU VAL LEU LYS GLU SEQRES 11 B 144 LYS LYS VAL ASP LEU LEU ALA ALA SER ASP LEU TYR LYS SEQRES 12 B 144 LEU MODRES 2F06 MSE A 1 MET SELENOMETHIONINE MODRES 2F06 MSE A 100 MET SELENOMETHIONINE MODRES 2F06 MSE A 118 MET SELENOMETHIONINE MODRES 2F06 MSE B 1 MET SELENOMETHIONINE MODRES 2F06 MSE B 100 MET SELENOMETHIONINE MODRES 2F06 MSE B 118 MET SELENOMETHIONINE HET MSE A 1 13 HET MSE A 100 8 HET MSE A 118 8 HET MSE B 1 13 HET MSE B 100 8 HET MSE B 118 8 HET HIS A 152 11 HET HIS B 151 11 HETNAM MSE SELENOMETHIONINE HETNAM HIS HISTIDINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 HIS 2(C6 H10 N3 O2 1+) FORMUL 5 HOH *85(H2 O) HELIX 1 1 GLY A 15 GLU A 27 1 13 HELIX 2 2 ASP A 51 ASN A 62 1 12 HELIX 3 3 GLY A 81 GLU A 93 1 13 HELIX 4 4 ASN A 117 LYS A 128 1 12 HELIX 5 5 ALA A 134 TYR A 139 1 6 HELIX 6 6 GLY B 15 GLU B 27 1 13 HELIX 7 7 ASP B 51 ASN B 62 1 12 HELIX 8 8 GLY B 81 GLU B 93 1 13 HELIX 9 9 ASN B 117 LYS B 128 1 12 HELIX 10 10 ALA B 134 LYS B 140 1 7 SHEET 1 A 6 LEU A 31 GLU A 38 0 SHEET 2 A 6 GLY A 43 VAL A 49 -1 O ILE A 48 N ALA A 33 SHEET 3 A 6 VAL A 2 LEU A 10 -1 N LEU A 10 O GLY A 43 SHEET 4 A 6 VAL A 66 PRO A 77 -1 O VAL A 71 N ALA A 3 SHEET 5 A 6 VAL A 108 PRO A 115 -1 O ILE A 113 N VAL A 72 SHEET 6 A 6 ILE A 97 ASN A 105 -1 N TYR A 99 O ARG A 114 SHEET 1 B 5 LEU A 31 GLU A 38 0 SHEET 2 B 5 GLY A 43 VAL A 49 -1 O ILE A 48 N ALA A 33 SHEET 3 B 5 VAL A 2 LEU A 10 -1 N LEU A 10 O GLY A 43 SHEET 4 B 5 VAL A 66 PRO A 77 -1 O VAL A 71 N ALA A 3 SHEET 5 B 5 ASP A 131 LEU A 133 -1 O LEU A 133 N GLY A 73 SHEET 1 C 6 LEU B 31 GLU B 38 0 SHEET 2 C 6 GLY B 43 VAL B 49 -1 O ARG B 46 N CYS B 35 SHEET 3 C 6 ALA B 3 LEU B 10 -1 N LEU B 10 O GLY B 43 SHEET 4 C 6 VAL B 66 PRO B 77 -1 O THR B 69 N GLN B 5 SHEET 5 C 6 VAL B 108 PRO B 115 -1 O ILE B 113 N VAL B 72 SHEET 6 C 6 ILE B 97 ASN B 105 -1 N TYR B 101 O VAL B 112 SHEET 1 D 5 LEU B 31 GLU B 38 0 SHEET 2 D 5 GLY B 43 VAL B 49 -1 O ARG B 46 N CYS B 35 SHEET 3 D 5 ALA B 3 LEU B 10 -1 N LEU B 10 O GLY B 43 SHEET 4 D 5 VAL B 66 PRO B 77 -1 O THR B 69 N GLN B 5 SHEET 5 D 5 ASP B 131 LEU B 132 -1 O ASP B 131 N SER B 75 SSBOND 1 CYS A 35 CYS A 35 1555 12565 2.34 SSBOND 2 CYS B 35 CYS B 35 1555 12565 2.01 LINK C ALA A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N VAL A 2 1555 1555 1.32 LINK C TYR A 99 N MSE A 100 1555 1555 1.33 LINK C MSE A 100 N TYR A 101 1555 1555 1.33 LINK C ASN A 117 N MSE A 118 1555 1555 1.32 LINK C MSE A 118 N ASP A 119 1555 1555 1.34 LINK C ALA B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N VAL B 2 1555 1555 1.32 LINK C TYR B 99 N MSE B 100 1555 1555 1.31 LINK C MSE B 100 N TYR B 101 1555 1555 1.32 LINK C ASN B 117 N MSE B 118 1555 1555 1.34 LINK C MSE B 118 N ASP B 119 1555 1555 1.33 SITE 1 AC1 12 ASN B 30 LEU B 31 ASN B 78 VAL B 79 SITE 2 AC1 12 ALA B 82 LEU B 83 SER B 102 ALA B 104 SITE 3 AC1 12 ALA B 109 HOH B 156 HOH B 169 HOH B 170 SITE 1 AC2 12 ASN A 30 LEU A 31 PRO A 77 ASN A 78 SITE 2 AC2 12 VAL A 79 ALA A 82 LEU A 83 SER A 102 SITE 3 AC2 12 ALA A 109 HOH A 156 HOH A 157 HOH A 158 CRYST1 64.622 64.622 244.942 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015475 0.008934 0.000000 0.00000 SCALE2 0.000000 0.017869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004083 0.00000