HEADER VIRAL PROTEIN 13-NOV-05 2F0C TITLE STRUCTURE OF THE RECEPTOR BINDING PROTEIN (ORF49, BBP) FROM LACTOPHAGE TITLE 2 TP901-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHAGE TP901-1 ORF49 (BPP); COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS PHAGE TP901-1; SOURCE 3 ORGANISM_TAXID: 35345; SOURCE 4 GENE: ORF49/BBP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST17 KEYWDS BETA-BARREL, BETA PRISM, 3 HELIX PARALLEL BUNDLE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CAMBILLAU,S.SPINELLI REVDAT 5 23-AUG-23 2F0C 1 REMARK SEQADV REVDAT 4 06-JUN-12 2F0C 1 HEADER JRNL KEYWDS REVDAT 3 13-JUL-11 2F0C 1 VERSN REVDAT 2 24-FEB-09 2F0C 1 VERSN REVDAT 1 28-MAR-06 2F0C 0 JRNL AUTH S.SPINELLI,V.CAMPANACCI,S.BLANGY,S.MOINEAU,M.TEGONI, JRNL AUTH 2 C.CAMBILLAU JRNL TITL MODULAR STRUCTURE OF THE RECEPTOR BINDING PROTEINS OF JRNL TITL 2 LACTOCOCCUS LACTIS PHAGES. THE RBP STRUCTURE OF THE JRNL TITL 3 TEMPERATE PHAGE TP901-1. JRNL REF J.BIOL.CHEM. V. 281 14256 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16549427 JRNL DOI 10.1074/JBC.M600666200 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 54010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2882 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3933 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1630 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.2250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3249 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 715 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.433 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3327 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2952 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4515 ; 1.286 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6906 ; 0.730 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 6.384 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;29.825 ;24.803 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 524 ;10.366 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.927 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 514 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3749 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 625 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 581 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3023 ; 0.208 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1630 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1899 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 501 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.243 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 41 ; 0.142 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 57 ; 0.286 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2788 ; 1.000 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 932 ; 0.164 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3491 ; 1.223 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1337 ; 2.196 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1024 ; 3.079 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2F0C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56893 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 81.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2BSD RESIDUES 162-264 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M AMMONIUM SULFATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.23200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.82800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.35800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.82800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.23200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.35800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -27 REMARK 465 SER A -26 REMARK 465 TYR A -25 REMARK 465 TYR A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 LEU A -17 REMARK 465 GLU A -16 REMARK 465 SER A -15 REMARK 465 THR A -14 REMARK 465 SER A -13 REMARK 465 LEU A -12 REMARK 465 TYR A -11 REMARK 465 LYS A -10 REMARK 465 LYS A -9 REMARK 465 ALA A -8 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 465 TYR A -2 REMARK 465 PHE A -1 REMARK 465 GLN A 0 REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ILE A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 VAL A 7 REMARK 465 TYR A 8 REMARK 465 ARG A 9 REMARK 465 GLY A 10 REMARK 465 MET A 11 REMARK 465 LYS A 12 REMARK 465 ASN A 13 REMARK 465 GLY A 14 REMARK 465 ALA A 15 REMARK 465 GLU A 16 REMARK 465 MET B -27 REMARK 465 SER B -26 REMARK 465 TYR B -25 REMARK 465 TYR B -24 REMARK 465 HIS B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 LEU B -17 REMARK 465 GLU B -16 REMARK 465 SER B -15 REMARK 465 THR B -14 REMARK 465 SER B -13 REMARK 465 LEU B -12 REMARK 465 TYR B -11 REMARK 465 LYS B -10 REMARK 465 LYS B -9 REMARK 465 ALA B -8 REMARK 465 GLY B -7 REMARK 465 SER B -6 REMARK 465 GLU B -5 REMARK 465 ASN B -4 REMARK 465 LEU B -3 REMARK 465 TYR B -2 REMARK 465 PHE B -1 REMARK 465 GLN B 0 REMARK 465 GLY B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 ILE B 4 REMARK 465 LYS B 5 REMARK 465 LYS B 6 REMARK 465 VAL B 7 REMARK 465 TYR B 8 REMARK 465 ARG B 9 REMARK 465 GLY B 10 REMARK 465 MET B 11 REMARK 465 LYS B 12 REMARK 465 ASN B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 MET C -27 REMARK 465 SER C -26 REMARK 465 TYR C -25 REMARK 465 TYR C -24 REMARK 465 HIS C -23 REMARK 465 HIS C -22 REMARK 465 HIS C -21 REMARK 465 HIS C -20 REMARK 465 HIS C -19 REMARK 465 HIS C -18 REMARK 465 LEU C -17 REMARK 465 GLU C -16 REMARK 465 SER C -15 REMARK 465 THR C -14 REMARK 465 SER C -13 REMARK 465 LEU C -12 REMARK 465 TYR C -11 REMARK 465 LYS C -10 REMARK 465 LYS C -9 REMARK 465 ALA C -8 REMARK 465 GLY C -7 REMARK 465 SER C -6 REMARK 465 GLU C -5 REMARK 465 ASN C -4 REMARK 465 LEU C -3 REMARK 465 TYR C -2 REMARK 465 PHE C -1 REMARK 465 GLN C 0 REMARK 465 GLY C 1 REMARK 465 ALA C 2 REMARK 465 SER C 3 REMARK 465 ILE C 4 REMARK 465 LYS C 5 REMARK 465 LYS C 6 REMARK 465 VAL C 7 REMARK 465 TYR C 8 REMARK 465 ARG C 9 REMARK 465 GLY C 10 REMARK 465 MET C 11 REMARK 465 LYS C 12 REMARK 465 ASN C 13 REMARK 465 GLY C 14 REMARK 465 ALA C 15 REMARK 465 GLU C 16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 368 O HOH A 371 1.61 REMARK 500 SD MET C 125 O HOH C 1025 1.89 REMARK 500 SD MET A 125 O HOH A 386 1.89 REMARK 500 O HOH A 387 O HOH B 817 2.09 REMARK 500 CB CYS B 119 O HOH B 1027 2.11 REMARK 500 CB CYS C 119 O HOH C 1022 2.13 REMARK 500 O HOH A 397 O HOH C 965 2.14 REMARK 500 O HOH B 857 O HOH B 1028 2.14 REMARK 500 CB CYS A 119 O HOH A 385 2.15 REMARK 500 OD2 ASP A 135 O1 GOL B 801 2.16 REMARK 500 O HOH A 322 O HOH B 841 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 841 O HOH B 853 2564 1.59 REMARK 500 O HOH B 853 O HOH B 903 2565 1.81 REMARK 500 O HOH A 381 O HOH C 914 4556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 80 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG C 80 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BSD RELATED DB: PDB REMARK 900 STRUCTURE OF THE LACTOPHAGE P2 RECEPTOR BINDING PROTEIN REMARK 900 RELATED ID: 1ZRU RELATED DB: PDB REMARK 900 STRUCTURE OF THE LACTOPHAGE P2 RECEPTOR BINDING PROTEIN IN COMPLEX REMARK 900 WITH GLYCEROL REMARK 900 RELATED ID: 2BSE RELATED DB: PDB REMARK 900 STRUCTURE OF LACTOCOCCAL BACTERIOPHAGE P2 RECEPTOR BINDING PROTEIN REMARK 900 IN COMPLEX WITH A LLAMA VHH DOMAIN DBREF 2F0C A 2 163 UNP Q9G096 Q9G096_9CAUD 1 163 DBREF 2F0C B 2 163 UNP Q9G096 Q9G096_9CAUD 1 163 DBREF 2F0C C 2 163 UNP Q9G096 Q9G096_9CAUD 1 163 SEQADV 2F0C MET A -27 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C SER A -26 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C TYR A -25 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C TYR A -24 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C HIS A -23 UNP Q9G096 EXPRESSION TAG SEQADV 2F0C HIS A -22 UNP Q9G096 EXPRESSION TAG SEQADV 2F0C HIS A -21 UNP Q9G096 EXPRESSION TAG SEQADV 2F0C HIS A -20 UNP Q9G096 EXPRESSION TAG SEQADV 2F0C HIS A -19 UNP Q9G096 EXPRESSION TAG SEQADV 2F0C HIS A -18 UNP Q9G096 EXPRESSION TAG SEQADV 2F0C LEU A -17 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C GLU A -16 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C SER A -15 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C THR A -14 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C SER A -13 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C LEU A -12 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C TYR A -11 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C LYS A -10 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C LYS A -9 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C ALA A -8 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C GLY A -7 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C SER A -6 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C GLU A -5 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C ASN A -4 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C LEU A -3 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C TYR A -2 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C PHE A -1 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C GLN A 0 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C GLY A 1 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C MET B -27 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C SER B -26 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C TYR B -25 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C TYR B -24 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C HIS B -23 UNP Q9G096 EXPRESSION TAG SEQADV 2F0C HIS B -22 UNP Q9G096 EXPRESSION TAG SEQADV 2F0C HIS B -21 UNP Q9G096 EXPRESSION TAG SEQADV 2F0C HIS B -20 UNP Q9G096 EXPRESSION TAG SEQADV 2F0C HIS B -19 UNP Q9G096 EXPRESSION TAG SEQADV 2F0C HIS B -18 UNP Q9G096 EXPRESSION TAG SEQADV 2F0C LEU B -17 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C GLU B -16 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C SER B -15 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C THR B -14 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C SER B -13 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C LEU B -12 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C TYR B -11 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C LYS B -10 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C LYS B -9 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C ALA B -8 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C GLY B -7 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C SER B -6 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C GLU B -5 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C ASN B -4 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C LEU B -3 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C TYR B -2 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C PHE B -1 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C GLN B 0 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C GLY B 1 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C MET C -27 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C SER C -26 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C TYR C -25 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C TYR C -24 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C HIS C -23 UNP Q9G096 EXPRESSION TAG SEQADV 2F0C HIS C -22 UNP Q9G096 EXPRESSION TAG SEQADV 2F0C HIS C -21 UNP Q9G096 EXPRESSION TAG SEQADV 2F0C HIS C -20 UNP Q9G096 EXPRESSION TAG SEQADV 2F0C HIS C -19 UNP Q9G096 EXPRESSION TAG SEQADV 2F0C HIS C -18 UNP Q9G096 EXPRESSION TAG SEQADV 2F0C LEU C -17 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C GLU C -16 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C SER C -15 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C THR C -14 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C SER C -13 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C LEU C -12 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C TYR C -11 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C LYS C -10 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C LYS C -9 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C ALA C -8 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C GLY C -7 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C SER C -6 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C GLU C -5 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C ASN C -4 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C LEU C -3 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C TYR C -2 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C PHE C -1 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C GLN C 0 UNP Q9G096 CLONING ARTIFACT SEQADV 2F0C GLY C 1 UNP Q9G096 CLONING ARTIFACT SEQRES 1 A 191 MET SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER SEQRES 2 A 191 THR SER LEU TYR LYS LYS ALA GLY SER GLU ASN LEU TYR SEQRES 3 A 191 PHE GLN GLY ALA SER ILE LYS LYS VAL TYR ARG GLY MET SEQRES 4 A 191 LYS ASN GLY ALA GLU THR ILE ASN ASP ASP LEU GLU ALA SEQRES 5 A 191 ILE ASN SER GLU LEU THR SER GLY GLY ASN VAL VAL HIS SEQRES 6 A 191 LYS THR GLY ASP GLU THR ILE ALA GLY LYS LYS THR PHE SEQRES 7 A 191 THR GLY ASN VAL GLU VAL ASN GLY SER LEU THR LEU PRO SEQRES 8 A 191 THR LYS SER TRP SER GLY GLU LEU GLY GLY GLY ILE ILE SEQRES 9 A 191 LEU SER LEU ARG LYS LYS GLY THR THR VAL GLU TYR SER SEQRES 10 A 191 ILE GLY GLY GLU ILE SER SER SER ILE LEU ALA ASN SER SEQRES 11 A 191 ASN LEU VAL ASN ARG SER VAL PRO ASN GLU PHE CYS PRO SEQRES 12 A 191 ARG ASN ARG CYS SER LEU VAL GLY HIS MET VAL GLY GLY SEQRES 13 A 191 TRP ASN ALA PHE HIS ILE ASP ILE PRO SER SER GLY VAL SEQRES 14 A 191 CYS GLN TRP PHE GLY PRO THR ALA SER SER GLY THR PRO SEQRES 15 A 191 ARG GLY THR GLY THR TYR PRO ILE ASP SEQRES 1 B 191 MET SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER SEQRES 2 B 191 THR SER LEU TYR LYS LYS ALA GLY SER GLU ASN LEU TYR SEQRES 3 B 191 PHE GLN GLY ALA SER ILE LYS LYS VAL TYR ARG GLY MET SEQRES 4 B 191 LYS ASN GLY ALA GLU THR ILE ASN ASP ASP LEU GLU ALA SEQRES 5 B 191 ILE ASN SER GLU LEU THR SER GLY GLY ASN VAL VAL HIS SEQRES 6 B 191 LYS THR GLY ASP GLU THR ILE ALA GLY LYS LYS THR PHE SEQRES 7 B 191 THR GLY ASN VAL GLU VAL ASN GLY SER LEU THR LEU PRO SEQRES 8 B 191 THR LYS SER TRP SER GLY GLU LEU GLY GLY GLY ILE ILE SEQRES 9 B 191 LEU SER LEU ARG LYS LYS GLY THR THR VAL GLU TYR SER SEQRES 10 B 191 ILE GLY GLY GLU ILE SER SER SER ILE LEU ALA ASN SER SEQRES 11 B 191 ASN LEU VAL ASN ARG SER VAL PRO ASN GLU PHE CYS PRO SEQRES 12 B 191 ARG ASN ARG CYS SER LEU VAL GLY HIS MET VAL GLY GLY SEQRES 13 B 191 TRP ASN ALA PHE HIS ILE ASP ILE PRO SER SER GLY VAL SEQRES 14 B 191 CYS GLN TRP PHE GLY PRO THR ALA SER SER GLY THR PRO SEQRES 15 B 191 ARG GLY THR GLY THR TYR PRO ILE ASP SEQRES 1 C 191 MET SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER SEQRES 2 C 191 THR SER LEU TYR LYS LYS ALA GLY SER GLU ASN LEU TYR SEQRES 3 C 191 PHE GLN GLY ALA SER ILE LYS LYS VAL TYR ARG GLY MET SEQRES 4 C 191 LYS ASN GLY ALA GLU THR ILE ASN ASP ASP LEU GLU ALA SEQRES 5 C 191 ILE ASN SER GLU LEU THR SER GLY GLY ASN VAL VAL HIS SEQRES 6 C 191 LYS THR GLY ASP GLU THR ILE ALA GLY LYS LYS THR PHE SEQRES 7 C 191 THR GLY ASN VAL GLU VAL ASN GLY SER LEU THR LEU PRO SEQRES 8 C 191 THR LYS SER TRP SER GLY GLU LEU GLY GLY GLY ILE ILE SEQRES 9 C 191 LEU SER LEU ARG LYS LYS GLY THR THR VAL GLU TYR SER SEQRES 10 C 191 ILE GLY GLY GLU ILE SER SER SER ILE LEU ALA ASN SER SEQRES 11 C 191 ASN LEU VAL ASN ARG SER VAL PRO ASN GLU PHE CYS PRO SEQRES 12 C 191 ARG ASN ARG CYS SER LEU VAL GLY HIS MET VAL GLY GLY SEQRES 13 C 191 TRP ASN ALA PHE HIS ILE ASP ILE PRO SER SER GLY VAL SEQRES 14 C 191 CYS GLN TRP PHE GLY PRO THR ALA SER SER GLY THR PRO SEQRES 15 C 191 ARG GLY THR GLY THR TYR PRO ILE ASP HET GOL B 801 6 HET GOL B 802 6 HET GOL C 803 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *715(H2 O) HELIX 1 1 THR A 17 SER A 31 1 15 HELIX 2 2 PRO A 110 CYS A 114 5 5 HELIX 3 3 GLU B 16 SER B 31 1 16 HELIX 4 4 PRO B 110 CYS B 114 5 5 HELIX 5 5 THR C 17 SER C 31 1 15 HELIX 6 6 PRO C 110 CYS C 114 5 5 SHEET 1 A 4 GLU A 42 ILE A 44 0 SHEET 2 A 4 LYS C 48 PHE C 50 1 O THR C 49 N ILE A 44 SHEET 3 A 4 VAL B 54 VAL B 56 1 N GLU B 55 O PHE C 50 SHEET 4 A 4 LEU A 60 THR A 61 1 N THR A 61 O VAL B 56 SHEET 1 B 4 GLU B 42 ILE B 44 0 SHEET 2 B 4 LYS A 48 PHE A 50 1 N THR A 49 O ILE B 44 SHEET 3 B 4 VAL C 54 VAL C 56 1 O GLU C 55 N PHE A 50 SHEET 4 B 4 LEU B 60 THR B 61 1 N THR B 61 O VAL C 56 SHEET 1 C 4 GLU C 42 ILE C 44 0 SHEET 2 C 4 LYS B 48 PHE B 50 1 N THR B 49 O ILE C 44 SHEET 3 C 4 VAL A 54 VAL A 56 1 N GLU A 55 O PHE B 50 SHEET 4 C 4 LEU C 60 THR C 61 1 O THR C 61 N VAL A 56 SHEET 1 D 8 THR A 64 GLY A 72 0 SHEET 2 D 8 ILE A 75 LYS A 82 -1 O LEU A 79 N TRP A 67 SHEET 3 D 8 THR A 85 GLY A 92 -1 O GLY A 91 N ILE A 76 SHEET 4 D 8 PRO A 154 PRO A 161 -1 O TYR A 160 N VAL A 86 SHEET 5 D 8 CYS A 119 MET A 125 -1 N HIS A 124 O ARG A 155 SHEET 6 D 8 ALA A 131 ILE A 136 -1 O ILE A 134 N LEU A 121 SHEET 7 D 8 GLN A 143 TRP A 144 -1 O GLN A 143 N ASP A 135 SHEET 8 D 8 SER A 102 ASN A 103 -1 N SER A 102 O TRP A 144 SHEET 1 E 7 THR B 64 GLY B 72 0 SHEET 2 E 7 ILE B 75 LYS B 82 -1 O LEU B 79 N TRP B 67 SHEET 3 E 7 THR B 85 GLY B 92 -1 O GLY B 91 N ILE B 76 SHEET 4 E 7 PRO B 154 PRO B 161 -1 O TYR B 160 N VAL B 86 SHEET 5 E 7 CYS B 119 MET B 125 -1 N HIS B 124 O ARG B 155 SHEET 6 E 7 ALA B 131 ILE B 136 -1 O ILE B 134 N LEU B 121 SHEET 7 E 7 GLN B 143 TRP B 144 -1 O GLN B 143 N ASP B 135 SHEET 1 F 8 THR C 64 GLY C 72 0 SHEET 2 F 8 ILE C 75 LYS C 82 -1 O LEU C 79 N TRP C 67 SHEET 3 F 8 THR C 85 GLY C 92 -1 O THR C 85 N LYS C 82 SHEET 4 F 8 PRO C 154 PRO C 161 -1 O TYR C 160 N VAL C 86 SHEET 5 F 8 CYS C 119 MET C 125 -1 N HIS C 124 O ARG C 155 SHEET 6 F 8 ALA C 131 ILE C 136 -1 O ILE C 134 N LEU C 121 SHEET 7 F 8 GLN C 143 TRP C 144 -1 O GLN C 143 N ASP C 135 SHEET 8 F 8 SER C 102 ASN C 103 -1 N SER C 102 O TRP C 144 SITE 1 AC1 6 ARG A 118 ASP A 135 ARG B 155 HOH B 940 SITE 2 AC1 6 HOH B1044 HOH B1045 SITE 1 AC2 7 HIS B 133 ASP B 135 PHE B 145 HOH B 895 SITE 2 AC2 7 HOH B 938 VAL C 126 ARG C 155 SITE 1 AC3 11 THR A 39 VAL A 126 ARG A 155 HOH A 273 SITE 2 AC3 11 HIS C 133 ASP C 135 PHE C 145 HOH C 888 SITE 3 AC3 11 HOH C 944 HOH C 989 HOH C1020 CRYST1 72.464 78.716 81.656 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013800 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012704 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012246 0.00000