HEADER TRANSFERASE 14-NOV-05 2F17 TITLE MOUSE THIAMIN PYROPHOSPHOKINASE IN A TERNARY COMPLEX WITH PYRITHIAMIN TITLE 2 PYROPHOSPHATE AND AMP AT 2.5 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIAMIN PYROPHOSPHOKINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THIAMINE PYROPHOSPHOKINASE 1, MTPK1; COMPND 5 EC: 2.7.6.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TPK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BETA BARREL, ALPHA/BETA/ALPHA SANDWICH, PYROPHOSPHOKINASE, AMP, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.Y.LIU,D.E.TIMM,T.D.HURLEY REVDAT 4 23-AUG-23 2F17 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 2F17 1 VERSN REVDAT 2 28-MAR-06 2F17 1 JRNL REVDAT 1 29-NOV-05 2F17 0 JRNL AUTH J.Y.LIU,D.E.TIMM,T.D.HURLEY JRNL TITL PYRITHIAMINE AS A SUBSTRATE FOR THIAMINE PYROPHOSPHOKINASE JRNL REF J.BIOL.CHEM. V. 281 6601 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16365036 JRNL DOI 10.1074/JBC.M510951200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 21991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1085 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.38 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3470 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 929 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 1.530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3897 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.39 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.318 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.66 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.979 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2F17 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000035325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21991 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 3.980 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11700 REMARK 200 FOR THE DATA SET : 8.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.61400 REMARK 200 FOR SHELL : 2.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1IG3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION EXPERIMENTS WERE SET REMARK 280 UP BY INCUBATING MOUSE TPK WITH PYRITHIAMIN AND MGATP PRIOR TO REMARK 280 ADDING THE EQUILIBRIUM MIXTURE OF ENZYME, SUBSTRATE AND PRODUCTS REMARK 280 TO THE PREVIOUSLY DETERMINED CRYSTALLIZATION CONDITIONS. , PH REMARK 280 7.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.14333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 94.28667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 94.28667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.14333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE DIMER IN THE ASYMMETRIC UNIT IS THOUGHT TO BE THE REMARK 300 BIOLOGICAL UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -276.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 154.78126 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 94.28667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 187 CA PRO A 187 C -0.160 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 94 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 PRO A 187 C - N - CD ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -9 -52.44 -142.54 REMARK 500 SER A -8 151.31 106.12 REMARK 500 SER A -1 130.58 137.16 REMARK 500 PRO A 7 -77.21 -40.11 REMARK 500 LEU A 8 25.84 -77.46 REMARK 500 PRO A 13 -77.65 -44.05 REMARK 500 THR A 14 -156.65 -70.46 REMARK 500 LYS A 18 88.34 99.49 REMARK 500 ASP A 46 -111.50 37.48 REMARK 500 GLU A 59 23.62 -147.95 REMARK 500 SER A 74 -40.18 -153.01 REMARK 500 ASP A 95 111.64 -26.46 REMARK 500 GLU A 116 51.49 39.03 REMARK 500 ARG A 131 129.91 -39.47 REMARK 500 LYS A 158 -110.22 52.68 REMARK 500 THR A 213 -62.76 -108.40 REMARK 500 LEU A 214 118.91 -166.79 REMARK 500 PRO B 7 -71.13 -38.55 REMARK 500 LEU B 8 21.75 -75.80 REMARK 500 ASP B 46 -110.24 40.42 REMARK 500 GLU B 59 27.79 -151.96 REMARK 500 PHE B 67 143.53 -177.60 REMARK 500 ASP B 71 20.05 -151.42 REMARK 500 PHE B 72 22.32 44.12 REMARK 500 SER B 74 -36.70 -130.59 REMARK 500 ASP B 95 109.56 -32.20 REMARK 500 ASP B 133 -8.16 -58.57 REMARK 500 LYS B 158 -113.03 54.16 REMARK 500 LEU B 214 118.67 -164.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 46 OD2 REMARK 620 2 ASP A 71 OD1 66.5 REMARK 620 3 ASP A 73 OD1 80.9 92.2 REMARK 620 4 ASP A 100 OD2 92.2 81.8 172.3 REMARK 620 5 AMP A 301 O3P 79.4 136.2 109.1 72.8 REMARK 620 6 PYI A 902 O2A 154.1 113.5 124.4 62.9 85.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 46 OD2 REMARK 620 2 ASP B 71 OD2 77.9 REMARK 620 3 ASP B 100 OD2 79.2 86.6 REMARK 620 4 EPE B2201 O2S 89.2 148.3 62.4 REMARK 620 5 PYI B2202 O2A 158.2 108.3 80.3 74.7 REMARK 620 6 PYI B2202 O2B 124.4 141.3 125.7 69.3 63.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 2201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYI A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYI B 2202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IG3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PYRITHIAMIN PYROPHOSPHATE AND MGAMP DBREF 2F17 A 1 243 UNP Q9R0M5 TPK1_MOUSE 1 243 DBREF 2F17 B 1 243 UNP Q9R0M5 TPK1_MOUSE 1 243 SEQADV 2F17 MET A -19 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 GLY A -18 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 SER A -17 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 SER A -16 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 HIS A -15 UNP Q9R0M5 EXPRESSION TAG SEQADV 2F17 HIS A -14 UNP Q9R0M5 EXPRESSION TAG SEQADV 2F17 HIS A -13 UNP Q9R0M5 EXPRESSION TAG SEQADV 2F17 HIS A -12 UNP Q9R0M5 EXPRESSION TAG SEQADV 2F17 HIS A -11 UNP Q9R0M5 EXPRESSION TAG SEQADV 2F17 HIS A -10 UNP Q9R0M5 EXPRESSION TAG SEQADV 2F17 SER A -9 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 SER A -8 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 GLY A -7 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 LEU A -6 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 VAL A -5 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 PRO A -4 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 ARG A -3 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 GLY A -2 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 SER A -1 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 HIS A 0 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 MET B -19 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 GLY B -18 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 SER B -17 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 SER B -16 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 HIS B -15 UNP Q9R0M5 EXPRESSION TAG SEQADV 2F17 HIS B -14 UNP Q9R0M5 EXPRESSION TAG SEQADV 2F17 HIS B -13 UNP Q9R0M5 EXPRESSION TAG SEQADV 2F17 HIS B -12 UNP Q9R0M5 EXPRESSION TAG SEQADV 2F17 HIS B -11 UNP Q9R0M5 EXPRESSION TAG SEQADV 2F17 HIS B -10 UNP Q9R0M5 EXPRESSION TAG SEQADV 2F17 SER B -9 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 SER B -8 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 GLY B -7 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 LEU B -6 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 VAL B -5 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 PRO B -4 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 ARG B -3 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 GLY B -2 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 SER B -1 UNP Q9R0M5 CLONING ARTIFACT SEQADV 2F17 HIS B 0 UNP Q9R0M5 CLONING ARTIFACT SEQRES 1 A 263 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 263 LEU VAL PRO ARG GLY SER HIS MET GLU HIS ALA PHE THR SEQRES 3 A 263 PRO LEU GLU PRO LEU LEU PRO THR GLY ASN LEU LYS TYR SEQRES 4 A 263 CYS LEU VAL VAL LEU ASN GLN PRO LEU ASP ALA ARG PHE SEQRES 5 A 263 ARG HIS LEU TRP LYS LYS ALA LEU LEU ARG ALA CYS ALA SEQRES 6 A 263 ASP GLY GLY ALA ASN HIS LEU TYR ASP LEU THR GLU GLY SEQRES 7 A 263 GLU ARG GLU SER PHE LEU PRO GLU PHE VAL SER GLY ASP SEQRES 8 A 263 PHE ASP SER ILE ARG PRO GLU VAL LYS GLU TYR TYR THR SEQRES 9 A 263 LYS LYS GLY CYS ASP LEU ILE SER THR PRO ASP GLN ASP SEQRES 10 A 263 HIS THR ASP PHE THR LYS CYS LEU GLN VAL LEU GLN ARG SEQRES 11 A 263 LYS ILE GLU GLU LYS GLU LEU GLN VAL ASP VAL ILE VAL SEQRES 12 A 263 THR LEU GLY GLY LEU GLY GLY ARG PHE ASP GLN ILE MET SEQRES 13 A 263 ALA SER VAL ASN THR LEU PHE GLN ALA THR HIS ILE THR SEQRES 14 A 263 PRO VAL PRO ILE ILE ILE ILE GLN LYS ASP SER LEU ILE SEQRES 15 A 263 TYR LEU LEU GLN PRO GLY LYS HIS ARG LEU HIS VAL ASP SEQRES 16 A 263 THR GLY MET GLU GLY SER TRP CYS GLY LEU ILE PRO VAL SEQRES 17 A 263 GLY GLN PRO CYS ASN GLN VAL THR THR THR GLY LEU LYS SEQRES 18 A 263 TRP ASN LEU THR ASN ASP VAL LEU GLY PHE GLY THR LEU SEQRES 19 A 263 VAL SER THR SER ASN THR TYR ASP GLY SER GLY LEU VAL SEQRES 20 A 263 THR VAL GLU THR ASP HIS PRO LEU LEU TRP THR MET ALA SEQRES 21 A 263 ILE LYS SER SEQRES 1 B 263 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 263 LEU VAL PRO ARG GLY SER HIS MET GLU HIS ALA PHE THR SEQRES 3 B 263 PRO LEU GLU PRO LEU LEU PRO THR GLY ASN LEU LYS TYR SEQRES 4 B 263 CYS LEU VAL VAL LEU ASN GLN PRO LEU ASP ALA ARG PHE SEQRES 5 B 263 ARG HIS LEU TRP LYS LYS ALA LEU LEU ARG ALA CYS ALA SEQRES 6 B 263 ASP GLY GLY ALA ASN HIS LEU TYR ASP LEU THR GLU GLY SEQRES 7 B 263 GLU ARG GLU SER PHE LEU PRO GLU PHE VAL SER GLY ASP SEQRES 8 B 263 PHE ASP SER ILE ARG PRO GLU VAL LYS GLU TYR TYR THR SEQRES 9 B 263 LYS LYS GLY CYS ASP LEU ILE SER THR PRO ASP GLN ASP SEQRES 10 B 263 HIS THR ASP PHE THR LYS CYS LEU GLN VAL LEU GLN ARG SEQRES 11 B 263 LYS ILE GLU GLU LYS GLU LEU GLN VAL ASP VAL ILE VAL SEQRES 12 B 263 THR LEU GLY GLY LEU GLY GLY ARG PHE ASP GLN ILE MET SEQRES 13 B 263 ALA SER VAL ASN THR LEU PHE GLN ALA THR HIS ILE THR SEQRES 14 B 263 PRO VAL PRO ILE ILE ILE ILE GLN LYS ASP SER LEU ILE SEQRES 15 B 263 TYR LEU LEU GLN PRO GLY LYS HIS ARG LEU HIS VAL ASP SEQRES 16 B 263 THR GLY MET GLU GLY SER TRP CYS GLY LEU ILE PRO VAL SEQRES 17 B 263 GLY GLN PRO CYS ASN GLN VAL THR THR THR GLY LEU LYS SEQRES 18 B 263 TRP ASN LEU THR ASN ASP VAL LEU GLY PHE GLY THR LEU SEQRES 19 B 263 VAL SER THR SER ASN THR TYR ASP GLY SER GLY LEU VAL SEQRES 20 B 263 THR VAL GLU THR ASP HIS PRO LEU LEU TRP THR MET ALA SEQRES 21 B 263 ILE LYS SER HET MG A 901 1 HET SO4 A 401 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET PYI A 902 27 HET AMP A 301 23 HET MG B 902 1 HET SO4 B 402 5 HET EPE B2201 15 HET PYI B2202 27 HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM PYI 1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-(2- HETNAM 2 PYI {[HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-2- HETNAM 3 PYI METHYLPYRIDINIUM HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN PYI PYRITHIAMIN PYROPHOSPHATE HETSYN EPE HEPES FORMUL 3 MG 2(MG 2+) FORMUL 4 SO4 6(O4 S 2-) FORMUL 9 PYI 2(C14 H21 N4 O7 P2 1+) FORMUL 10 AMP C10 H14 N5 O7 P FORMUL 13 EPE C8 H18 N2 O4 S FORMUL 15 HOH *132(H2 O) HELIX 1 1 LEU A 8 LEU A 12 5 5 HELIX 2 2 ARG A 31 ALA A 39 1 9 HELIX 3 3 GLY A 47 THR A 56 1 10 HELIX 4 4 GLU A 59 PHE A 63 5 5 HELIX 5 5 ARG A 76 LYS A 86 1 11 HELIX 6 6 THR A 99 LYS A 115 1 17 HELIX 7 7 ARG A 131 ALA A 145 1 15 HELIX 8 8 THR A 146 ILE A 148 5 3 HELIX 9 9 LEU B 8 LEU B 12 5 5 HELIX 10 10 ARG B 31 ALA B 39 1 9 HELIX 11 11 GLY B 47 THR B 56 1 10 HELIX 12 12 GLU B 59 PHE B 63 5 5 HELIX 13 13 ARG B 76 LYS B 86 1 11 HELIX 14 14 THR B 99 LYS B 115 1 17 HELIX 15 15 ARG B 131 ALA B 145 1 15 HELIX 16 16 THR B 146 ILE B 148 5 3 SHEET 1 A 5 HIS A 3 PHE A 5 0 SHEET 2 A 5 GLY A 168 HIS A 173 1 O ARG A 171 N HIS A 3 SHEET 3 A 5 LEU A 226 THR A 231 -1 O VAL A 227 N LEU A 172 SHEET 4 A 5 CYS A 192 THR A 198 -1 N THR A 196 O GLU A 230 SHEET 5 A 5 ASP A 207 LEU A 209 -1 O LEU A 209 N CYS A 192 SHEET 1 B10 ASP A 89 SER A 92 0 SHEET 2 B10 PHE A 67 GLY A 70 1 N VAL A 68 O ASP A 89 SHEET 3 B10 LEU A 41 ALA A 45 1 N CYS A 44 O SER A 69 SHEET 4 B10 TYR A 19 VAL A 23 1 N LEU A 21 O LEU A 41 SHEET 5 B10 VAL A 121 LEU A 125 1 O LEU A 125 N VAL A 22 SHEET 6 B10 ILE A 153 GLN A 157 1 O ILE A 156 N THR A 124 SHEET 7 B10 SER A 160 LEU A 165 -1 O SER A 160 N GLN A 157 SHEET 8 B10 LEU A 235 ILE A 241 -1 O TRP A 237 N TYR A 163 SHEET 9 B10 GLU A 179 ILE A 186 -1 N GLY A 180 O ALA A 240 SHEET 10 B10 SER A 216 ASN A 219 -1 O ASN A 219 N CYS A 183 SHEET 1 C 5 GLU B 2 PHE B 5 0 SHEET 2 C 5 GLY B 168 HIS B 173 1 O ARG B 171 N PHE B 5 SHEET 3 C 5 LEU B 226 THR B 231 -1 O VAL B 227 N LEU B 172 SHEET 4 C 5 CYS B 192 THR B 198 -1 N THR B 196 O GLU B 230 SHEET 5 C 5 ASP B 207 LEU B 209 -1 O LEU B 209 N CYS B 192 SHEET 1 D10 ASP B 89 SER B 92 0 SHEET 2 D10 PHE B 67 GLY B 70 1 N VAL B 68 O ASP B 89 SHEET 3 D10 LEU B 41 ALA B 45 1 N CYS B 44 O SER B 69 SHEET 4 D10 TYR B 19 VAL B 23 1 N LEU B 21 O LEU B 41 SHEET 5 D10 VAL B 121 LEU B 125 1 O LEU B 125 N VAL B 22 SHEET 6 D10 ILE B 153 GLN B 157 1 O ILE B 156 N THR B 124 SHEET 7 D10 SER B 160 LEU B 165 -1 O SER B 160 N GLN B 157 SHEET 8 D10 LEU B 235 ILE B 241 -1 O TRP B 237 N TYR B 163 SHEET 9 D10 GLU B 179 ILE B 186 -1 N ILE B 186 O LEU B 236 SHEET 10 D10 SER B 216 ASN B 219 -1 O ASN B 219 N CYS B 183 LINK OD2 ASP A 46 MG MG A 901 1555 1555 2.41 LINK OD1 ASP A 71 MG MG A 901 1555 1555 2.40 LINK OD1 ASP A 73 MG MG A 901 1555 1555 2.40 LINK OD2 ASP A 100 MG MG A 901 1555 1555 2.41 LINK O3P AMP A 301 MG MG A 901 1555 1555 2.40 LINK MG MG A 901 O2A PYI A 902 1555 1555 2.42 LINK OD2 ASP B 46 MG MG B 902 1555 1555 2.40 LINK OD2 ASP B 71 MG MG B 902 1555 1555 2.42 LINK OD2 ASP B 100 MG MG B 902 1555 1555 2.40 LINK MG MG B 902 O2S EPE B2201 1555 1555 2.42 LINK MG MG B 902 O2A PYI B2202 1555 1555 2.45 LINK MG MG B 902 O2B PYI B2202 1555 1555 2.45 SITE 1 AC1 6 ASP A 46 ASP A 71 ASP A 73 ASP A 100 SITE 2 AC1 6 AMP A 301 PYI A 902 SITE 1 AC2 5 ASP B 46 ASP B 71 ASP B 100 EPE B2201 SITE 2 AC2 5 PYI B2202 SITE 1 AC3 4 GLY A 58 ARG A 60 SO4 A 405 HOH A 905 SITE 1 AC4 5 GLY B 58 GLU B 59 ARG B 60 TYR B 82 SITE 2 AC4 5 HOH B2264 SITE 1 AC5 7 HIS A 98 THR A 99 THR A 102 ASN A 140 SITE 2 AC5 7 THR A 141 GLN A 144 PYI A 902 SITE 1 AC6 4 LYS A 85 LYS A 86 SO4 A 401 HOH A 905 SITE 1 AC7 6 LEU A 142 VAL A 151 PRO A 152 ILE A 153 SITE 2 AC7 6 TYR A 163 HOH A 904 SITE 1 AC8 12 LEU B 24 ASN B 25 ASP B 46 GLY B 47 SITE 2 AC8 12 SER B 74 THR B 99 ASP B 100 PHE B 101 SITE 3 AC8 12 ALA B 137 SER B 138 MG B 902 PYI B2202 SITE 1 AC9 16 GLN A 96 ASP A 97 HIS A 98 THR A 99 SITE 2 AC9 16 ASP A 100 ARG A 131 GLN A 134 AMP A 301 SITE 3 AC9 16 SO4 A 403 MG A 901 HOH A 906 HOH A 925 SITE 4 AC9 16 TRP B 202 SER B 216 THR B 217 SER B 218 SITE 1 BC1 14 TRP A 202 SER A 216 THR A 217 SER A 218 SITE 2 BC1 14 ASN A 219 ASP B 71 GLN B 96 ASP B 97 SITE 3 BC1 14 HIS B 98 THR B 99 ASP B 100 ARG B 131 SITE 4 BC1 14 MG B 902 EPE B2201 SITE 1 BC2 18 LEU A 24 ASN A 25 GLN A 26 ALA A 45 SITE 2 BC2 18 ASP A 46 GLY A 47 SER A 74 THR A 99 SITE 3 BC2 18 ASP A 100 PHE A 101 GLY A 127 GLY A 129 SITE 4 BC2 18 GLY A 130 ARG A 131 GLN A 134 MG A 901 SITE 5 BC2 18 PYI A 902 HOH A 942 CRYST1 89.363 89.363 141.430 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011190 0.006461 0.000000 0.00000 SCALE2 0.000000 0.012921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007071 0.00000